View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11108_low_6 (Length: 416)

Name: NF11108_low_6
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11108_low_6
NF11108_low_6
[»] chr5 (12 HSPs)
chr5 (1-212)||(15055498-15055709)
chr5 (336-393)||(15055333-15055390)
chr5 (36-105)||(15011388-15011457)
chr5 (37-105)||(14284764-14284832)
chr5 (108-164)||(15011603-15011659)
chr5 (108-163)||(14284972-14285027)
chr5 (108-152)||(14778173-14778217)
chr5 (66-105)||(15933313-15933352)
chr5 (108-165)||(14740507-14740565)
chr5 (348-382)||(15011839-15011873)
chr5 (111-163)||(14292142-14292194)
chr5 (276-308)||(15055402-15055434)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15055709 - 15055498
Alignment:
Q  1 acttcattaacaagctcttcttgttgcttatttaaatttcatctactttcccattaattttataatttctactattgccatttacttgagggcgagatac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15055709 acttcattaacaagctcttcttgttgcttatttatatttcatctactttcccattaattttataatttctactattgccatttacttgagggcgagatac 15055610  T
Q  101 atgatagcatagttgattctcttctatgtgcatggtttacagggtttatctcttatgccttttcttcattgtatacgaaattttaattgtattcttgcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15055609 atgatagcatagttgattctcttctatgtgcatggtttacagggtttatctcttatgccttttcttcattgtatacgaaattttaattgtattcttgcac 15055510  T
Q  201 tcagtagaaact 212  Q
    ||||||||||||    
T  15055509 tcagtagaaact 15055498  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 15055390 - 15055333
Alignment:
Q  336 gttgggatttatttttagttctcacataattgtcaatcatgaattttttatgctgaat 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15055390 gttgggatttatttttagttctcacataattgtcaatcatgaattttttatgctgaat 15055333  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 15011388 - 15011457
Alignment:
Q  36 atttcatctactttcccattaattttataatttctactattgccatttacttgagggcgagatacatgat 105  Q
    ||||||||| |||||||||||  | |||||||||||||||||||||||| ||||||| ||| ||||||||    
T  15011388 atttcatcttctttcccattagctgtataatttctactattgccatttatttgagggtgaggtacatgat 15011457  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 14284764 - 14284832
Alignment:
Q  37 tttcatctactttcccattaattttataatttctactattgccatttacttgagggcgagatacatgat 105  Q
    |||||||| |||||||| || ||| || |||||||||||||||||||||||||||| ||||||| ||||    
T  14284764 tttcatcttctttcccactagtttcatgatttctactattgccatttacttgagggtgagatacgtgat 14284832  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 15011603 - 15011659
Alignment:
Q  108 catagttgattctcttctatgtgcatggtttacagggtttatctcttatgccttttc 164  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||    
T  15011603 catagttgattctcttctatgtgcatggtttgcagagttgatctcttttgccttttc 15011659  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 14284972 - 14285027
Alignment:
Q  108 catagttgattctcttctatgtgcatggtttacagggtttatctcttatgcctttt 163  Q
    ||||||||||||||| || |||||||||||| ||||||||||||||| ||||||||    
T  14284972 catagttgattctctactttgtgcatggtttgcagggtttatctcttttgcctttt 14285027  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 14778217 - 14778173
Alignment:
Q  108 catagttgattctcttctatgtgcatggtttacagggtttatctc 152  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  14778217 catagttgattctcttctatgtgcatggtttgtagggtttatctc 14778173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 15933352 - 15933313
Alignment:
Q  66 tttctactattgccatttacttgagggcgagatacatgat 105  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  15933352 tttctactattgccatttacttgaggatgagatacatgat 15933313  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 14740565 - 14740507
Alignment:
Q  108 catagttgattctcttctatgtgcatggtttacag-ggtttatctcttatgccttttct 165  Q
    |||||||||||||||||||||||| || ||| ||| | |||||||||| ||||||||||    
T  14740565 catagttgattctcttctatgtgcttgctttgcagagttttatctcttttgccttttct 14740507  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 382
Target Start/End: Original strand, 15011839 - 15011873
Alignment:
Q  348 ttttagttctcacataattgtcaatcatgaatttt 382  Q
    ||||||||||||||||| |||||||||||||||||    
T  15011839 ttttagttctcacataaatgtcaatcatgaatttt 15011873  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 14292142 - 14292194
Alignment:
Q  111 agttgattctcttctatgtgcatggtttacagggtttatctcttatgcctttt 163  Q
    |||||||||| | ||||||||| ||||| | ||||||||||||| ||||||||    
T  14292142 agttgattctatactatgtgcagggttttctgggtttatctcttttgcctttt 14292194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 15055434 - 15055402
Alignment:
Q  276 gtaaactcctttaagttacactaccaaataaaa 308  Q
    |||||||||||||||||||||||||||| ||||    
T  15055434 gtaaactcctttaagttacactaccaaaaaaaa 15055402  T

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