View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11108_low_7 (Length: 400)
Name: NF11108_low_7
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11108_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 39795069 - 39794682
Alignment:
| Q |
1 |
ctccactgtttgcttcttctatctttgttgtggctgccatttctgaatgataagtaatgtcacatgcatgtatttgaatatttcattaattcattatttc |
100 |
Q |
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| T |
39795069 |
ctccactgtttgcttcttctatctttgttgtggctgccatttctgaatgataagtaatgtcacatgcatgtatttgaatatttcattaattcattatttc |
39794970 |
T |
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| Q |
101 |
ttgacaagtttaacttgtttttgtgggtttctcgtaaataaataacattgtacatgtgggtacacaaagcttgtaaattttgtaatcaattgcttttcat |
200 |
Q |
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| T |
39794969 |
ttgacaagtttaacttgtttttgtgggtttctcgtaaataaataacattgtacatgtggttacacaaagcttgtaaattttgtaatcaattgcttttcat |
39794870 |
T |
|
| Q |
201 |
attatttatatatgtaattggattttaactttcaagttcttactgcgattatatcattgaagctcttactgccattattttaagctctagactgagtcca |
300 |
Q |
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| T |
39794869 |
attatttatatatgtaattggattttaactttcaagttcttactgcgattatatcattgatgctcttactgccattattttaagctctagactgagtcca |
39794770 |
T |
|
| Q |
301 |
acaatgcaactaatttcccagcaataacgttacatgctattgtggtcctatacattggtgaagagtagcatataatgtatgtaattgcctt |
391 |
Q |
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| T |
39794769 |
acaatgcaactaatttcc---caataacgttacatgctattgtggtcctatacattggtgaagagtagcatataatgtatgtaattgcctt |
39794682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39774089 - 39774042
Alignment:
| Q |
1 |
ctccactgtttgcttcttctatctttgttgtggctgccatttctgaat |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39774089 |
ctccactgtttgcttcttctatctttgttgtggctgccatttctgaat |
39774042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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