View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11108_low_9 (Length: 362)

Name: NF11108_low_9
Description: NF11108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11108_low_9
NF11108_low_9
[»] chr5 (53 HSPs)
chr5 (19-349)||(38835260-38835593)
chr5 (19-78)||(3851435-3851494)
chr5 (19-95)||(37944674-37944750)
chr5 (19-81)||(43446865-43446927)
chr5 (19-78)||(11262400-11262459)
chr5 (19-76)||(15712132-15712189)
chr5 (19-96)||(19531292-19531369)
chr5 (19-75)||(42013894-42013950)
chr5 (24-78)||(37944611-37944665)
chr5 (25-78)||(11262337-11262390)
chr5 (25-78)||(19531379-19531432)
chr5 (25-78)||(42013831-42013884)
chr5 (25-78)||(3851372-3851425)
chr5 (25-78)||(23914850-23914903)
chr5 (25-78)||(26300120-26300173)
chr5 (90-169)||(873495-873574)
chr5 (90-169)||(8736931-8737010)
chr5 (25-92)||(8961214-8961281)
chr5 (19-78)||(23914913-23914972)
chr5 (19-93)||(13311246-13311320)
chr5 (19-78)||(35969137-35969197)
chr5 (26-78)||(35969208-35969260)
chr5 (19-78)||(13157405-13157463)
chr5 (19-78)||(26300183-26300242)
chr5 (28-78)||(6763778-6763828)
chr5 (26-75)||(22581939-22581988)
chr5 (26-75)||(25408555-25408604)
chr5 (93-146)||(42554990-42555043)
chr5 (21-57)||(11172053-11172089)
chr5 (28-76)||(13157344-13157392)
chr5 (26-78)||(27895906-27895958)
chr5 (19-98)||(37870089-37870168)
chr5 (28-75)||(12646585-12646632)
chr5 (24-75)||(14064887-14064937)
chr5 (25-76)||(15712199-15712250)
chr5 (90-169)||(32813730-32813809)
chr5 (35-78)||(37870026-37870069)
chr5 (28-78)||(38835606-38835657)
chr5 (43-78)||(43447464-43447499)
chr5 (26-80)||(238805-238859)
chr5 (25-75)||(8221956-8222005)
chr5 (25-75)||(25408621-25408671)
chr5 (24-74)||(33652430-33652480)
chr5 (91-172)||(4087759-4087840)
chr5 (19-76)||(8961291-8961348)
chr5 (26-75)||(22474017-22474065)
chr5 (28-93)||(37067846-37067911)
chr5 (26-78)||(1098706-1098758)
chr5 (25-73)||(12165298-12165346)
chr5 (23-75)||(12750194-12750246)
chr5 (28-80)||(15311939-15311991)
chr5 (33-81)||(26045271-26045319)
chr5 (23-83)||(27895972-27896032)
[»] chr2 (33 HSPs)
chr2 (19-81)||(30902279-30902341)
chr2 (19-78)||(38594416-38594475)
chr2 (19-78)||(38598012-38598071)
chr2 (19-76)||(43426700-43426757)
chr2 (26-78)||(34248424-34248476)
chr2 (19-78)||(34248487-34248546)
chr2 (19-78)||(1981056-1981115)
chr2 (19-78)||(3887905-3887964)
chr2 (24-76)||(25278185-25278237)
chr2 (19-78)||(5574119-5574178)
chr2 (25-78)||(5574188-5574241)
chr2 (25-78)||(30902351-30902404)
chr2 (90-163)||(31425385-31425458)
chr2 (26-78)||(3887842-3887894)
chr2 (19-78)||(6566987-6567046)
chr2 (25-92)||(43426623-43426690)
chr2 (25-78)||(22373688-22373742)
chr2 (26-75)||(3123982-3124031)
chr2 (19-76)||(38618170-38618227)
chr2 (28-92)||(6566910-6566974)
chr2 (26-78)||(41824270-41824322)
chr2 (26-74)||(44274620-44274668)
chr2 (19-78)||(22373619-22373678)
chr2 (26-81)||(26836234-26836289)
chr2 (26-93)||(27881231-27881298)
chr2 (43-78)||(43100758-43100793)
chr2 (28-78)||(11342051-11342101)
chr2 (25-75)||(14308671-14308721)
chr2 (25-75)||(31619849-31619898)
chr2 (26-75)||(14308725-14308774)
chr2 (24-73)||(23378019-23378068)
chr2 (19-78)||(7837094-7837153)
chr2 (28-92)||(15446859-15446923)
[»] chr1 (59 HSPs)
chr1 (19-92)||(34658381-34658454)
chr1 (25-78)||(2352973-2353026)
chr1 (19-76)||(3384234-3384291)
chr1 (25-78)||(23944046-23944099)
chr1 (18-78)||(35367549-35367609)
chr1 (19-78)||(37734782-37734841)
chr1 (90-171)||(6667100-6667181)
chr1 (25-78)||(8258021-8258074)
chr1 (19-76)||(14418129-14418186)
chr1 (19-75)||(8257955-8258011)
chr1 (19-78)||(2349765-2349824)
chr1 (25-78)||(639808-639861)
chr1 (25-78)||(4602722-4602775)
chr1 (25-78)||(17490497-17490550)
chr1 (25-78)||(31008268-31008321)
chr1 (19-76)||(31008331-31008388)
chr1 (25-78)||(33604069-33604122)
chr1 (25-78)||(48022604-48022657)
chr1 (19-78)||(639871-639930)
chr1 (27-78)||(37734853-37734904)
chr1 (19-78)||(40262477-40262536)
chr1 (19-78)||(48022667-48022726)
chr1 (26-92)||(38468765-38468831)
chr1 (19-93)||(5856355-5856425)
chr1 (25-78)||(6065539-6065592)
chr1 (25-97)||(15439940-15440012)
chr1 (26-78)||(27206768-27206820)
chr1 (19-78)||(4060243-4060302)
chr1 (19-78)||(4602653-4602712)
chr1 (19-78)||(6065470-6065529)
chr1 (19-78)||(15439871-15439930)
chr1 (19-78)||(27206831-27206890)
chr1 (19-78)||(33604000-33604059)
chr1 (24-78)||(3384300-3384354)
chr1 (25-78)||(5431418-5431471)
chr1 (25-78)||(5856435-5856488)
chr1 (31-76)||(21305051-21305096)
chr1 (25-81)||(6508475-6508531)
chr1 (27-78)||(1035967-1036018)
chr1 (28-74)||(1811276-1811322)
chr1 (28-78)||(21321399-21321449)
chr1 (28-78)||(34953977-34954027)
chr1 (25-75)||(35838731-35838780)
chr1 (28-78)||(38834620-38834670)
chr1 (25-78)||(40262546-40262597)
chr1 (25-75)||(42914614-42914663)
chr1 (26-78)||(2349835-2349888)
chr1 (25-78)||(4060180-4060233)
chr1 (25-78)||(10256790-10256843)
chr1 (48-93)||(27939181-27939226)
chr1 (25-78)||(34597529-34597582)
chr1 (32-73)||(43318093-43318134)
chr1 (26-78)||(1035896-1035948)
chr1 (26-78)||(3906840-3906892)
chr1 (26-78)||(5431350-5431402)
chr1 (25-93)||(19175666-19175734)
chr1 (25-73)||(34597591-34597639)
chr1 (28-80)||(42660364-42660416)
chr1 (25-73)||(43728264-43728312)
[»] chr3 (54 HSPs)
chr3 (25-101)||(29512209-29512285)
chr3 (19-78)||(29565118-29565177)
chr3 (19-78)||(18939972-18940031)
chr3 (19-78)||(38455237-38455296)
chr3 (19-78)||(51239315-51239374)
chr3 (19-78)||(52168292-52168351)
chr3 (19-97)||(51617321-51617399)
chr3 (25-78)||(29720154-29720207)
chr3 (24-93)||(33412542-33412611)
chr3 (25-78)||(52931650-52931703)
chr3 (25-81)||(50260939-50260995)
chr3 (19-78)||(41349669-41349728)
chr3 (19-78)||(52315462-52315521)
chr3 (24-78)||(42449114-42449168)
chr3 (19-76)||(36362676-36362733)
chr3 (25-77)||(29720227-29720279)
chr3 (19-78)||(17552486-17552545)
chr3 (24-74)||(33412478-33412528)
chr3 (25-78)||(41349738-41349792)
chr3 (25-78)||(18940047-18940100)
chr3 (19-76)||(22173806-22173863)
chr3 (25-93)||(2128439-2128507)
chr3 (25-93)||(24722681-24722749)
chr3 (25-77)||(52315400-52315452)
chr3 (24-75)||(13083948-13083998)
chr3 (25-76)||(29565187-29565238)
chr3 (25-76)||(38455176-38455227)
chr3 (19-78)||(42449177-42449236)
chr3 (25-78)||(21403974-21404025)
chr3 (19-93)||(22153131-22153205)
chr3 (19-56)||(29512162-29512199)
chr3 (25-78)||(36362613-36362666)
chr3 (25-78)||(51617409-51617462)
chr3 (19-56)||(52931713-52931750)
chr3 (90-171)||(53717499-53717580)
chr3 (19-75)||(37492393-37492449)
chr3 (19-78)||(50261005-50261065)
chr3 (19-78)||(21403906-21403964)
chr3 (19-78)||(22099788-22099847)
chr3 (19-78)||(29720085-29720144)
chr3 (29-76)||(32758977-32759024)
chr3 (19-78)||(32759038-32759097)
chr3 (25-72)||(52168361-52168408)
chr3 (90-164)||(4639709-4639783)
chr3 (26-72)||(4980352-4980398)
chr3 (28-78)||(10872753-10872803)
chr3 (94-172)||(36790294-36790371)
chr3 (91-169)||(40891477-40891555)
chr3 (24-97)||(105362-105435)
chr3 (26-75)||(4980285-4980334)
chr3 (26-75)||(26367483-26367532)
chr3 (26-75)||(31706625-31706674)
chr3 (25-74)||(52931751-52931800)
chr3 (25-93)||(22496945-22497013)
[»] chr8 (30 HSPs)
chr8 (25-78)||(9056099-9056152)
chr8 (19-78)||(7377626-7377686)
chr8 (19-75)||(9056033-9056089)
chr8 (25-76)||(9808450-9808501)
chr8 (90-171)||(16242870-16242951)
chr8 (25-78)||(26014578-26014631)
chr8 (19-78)||(1739637-1739696)
chr8 (19-93)||(13228864-13228938)
chr8 (19-76)||(13211311-13211368)
chr8 (25-78)||(14381247-14381300)
chr8 (19-76)||(15285664-15285721)
chr8 (19-76)||(15466033-15466090)
chr8 (25-78)||(40098838-40098891)
chr8 (25-73)||(7377568-7377616)
chr8 (19-95)||(40098752-40098828)
chr8 (25-76)||(13211250-13211301)
chr8 (19-78)||(14381310-14381369)
chr8 (23-85)||(7428894-7428956)
chr8 (19-93)||(37716146-37716220)
chr8 (19-92)||(26014641-26014713)
chr8 (25-62)||(13228948-13228985)
chr8 (26-75)||(29424062-29424111)
chr8 (25-78)||(33574865-33574918)
chr8 (26-73)||(24418959-24419006)
chr8 (24-78)||(11692057-11692110)
chr8 (25-75)||(12955834-12955883)
chr8 (24-78)||(24820374-24820428)
chr8 (26-76)||(37716085-37716135)
chr8 (44-80)||(2810039-2810075)
chr8 (28-92)||(10117051-10117115)
[»] chr7 (45 HSPs)
chr7 (28-93)||(1706914-1706979)
chr7 (19-76)||(29498855-29498912)
chr7 (19-78)||(1706842-1706901)
chr7 (19-78)||(22106739-22106798)
chr7 (19-78)||(40529553-40529612)
chr7 (24-81)||(716311-716368)
chr7 (19-78)||(18234417-18234476)
chr7 (19-78)||(38238856-38238915)
chr7 (19-78)||(46943953-46944012)
chr7 (28-78)||(34703524-34703574)
chr7 (28-78)||(40416987-40417037)
chr7 (26-78)||(4406426-4406478)
chr7 (91-171)||(29368246-29368326)
chr7 (19-78)||(25079279-25079338)
chr7 (24-78)||(25079216-25079270)
chr7 (24-78)||(27554506-27554560)
chr7 (25-78)||(38238792-38238846)
chr7 (25-78)||(22106676-22106729)
chr7 (19-76)||(34703454-34703511)
chr7 (19-76)||(40416917-40416974)
chr7 (25-78)||(40529622-40529675)
chr7 (26-78)||(21387585-21387637)
chr7 (25-81)||(24936611-24936667)
chr7 (20-78)||(716242-716301)
chr7 (19-78)||(27554569-27554628)
chr7 (24-75)||(31417594-31417645)
chr7 (90-172)||(43506444-43506527)
chr7 (19-74)||(45000614-45000669)
chr7 (26-100)||(12171321-12171395)
chr7 (26-84)||(22281522-22281580)
chr7 (26-76)||(46944016-46944066)
chr7 (21-56)||(7430958-7430993)
chr7 (28-75)||(15051095-15051142)
chr7 (19-78)||(22281452-22281511)
chr7 (25-92)||(26904859-26904926)
chr7 (25-76)||(29498794-29498845)
chr7 (25-92)||(45000679-45000746)
chr7 (21-75)||(24936694-24936747)
chr7 (28-78)||(34478316-34478366)
chr7 (24-65)||(5212077-5212118)
chr7 (26-75)||(44416544-44416593)
chr7 (23-75)||(15051159-15051211)
chr7 (26-78)||(16777901-16777953)
chr7 (25-73)||(21387654-21387702)
chr7 (29-73)||(21886481-21886525)
[»] scaffold0047 (3 HSPs)
scaffold0047 (19-78)||(61172-61231)
scaffold0047 (25-78)||(61240-61293)
scaffold0047 (24-76)||(65997-66048)
[»] chr6 (25 HSPs)
chr6 (19-78)||(21506472-21506531)
chr6 (19-78)||(30397796-30397855)
chr6 (34-78)||(28577610-28577654)
chr6 (25-76)||(4844300-4844351)
chr6 (89-171)||(793016-793098)
chr6 (24-78)||(21998048-21998102)
chr6 (24-76)||(21506540-21506592)
chr6 (19-75)||(21998111-21998167)
chr6 (19-78)||(17773573-17773632)
chr6 (25-83)||(30460691-30460749)
chr6 (25-78)||(17268022-17268075)
chr6 (25-78)||(31536320-31536373)
chr6 (19-78)||(17268085-17268144)
chr6 (26-92)||(3012439-3012505)
chr6 (31-73)||(4844359-4844401)
chr6 (25-95)||(30397717-30397787)
chr6 (19-76)||(8363627-8363684)
chr6 (25-78)||(17773510-17773563)
chr6 (19-76)||(28577673-28577730)
chr6 (22-83)||(31536389-31536450)
chr6 (25-65)||(30669097-30669137)
chr6 (25-75)||(13276498-13276548)
chr6 (26-75)||(15836551-15836600)
chr6 (19-76)||(30460624-30460681)
chr6 (23-75)||(15836615-15836667)
[»] chr4 (43 HSPs)
chr4 (19-78)||(13689545-13689604)
chr4 (19-81)||(29223948-29224010)
chr4 (25-78)||(24941120-24941173)
chr4 (19-78)||(5418524-5418583)
chr4 (27-93)||(3504071-3504137)
chr4 (24-78)||(5281212-5281266)
chr4 (24-78)||(52817644-52817698)
chr4 (25-78)||(5418593-5418646)
chr4 (28-93)||(6243706-6243771)
chr4 (30-78)||(44156083-44156131)
chr4 (18-80)||(10031504-10031565)
chr4 (19-81)||(10031593-10031655)
chr4 (26-78)||(13689615-13689667)
chr4 (28-92)||(20598252-20598316)
chr4 (90-169)||(29335976-29336056)
chr4 (90-166)||(48101276-48101352)
chr4 (90-165)||(39837236-39837311)
chr4 (19-74)||(52817580-52817635)
chr4 (27-78)||(55087791-55087842)
chr4 (19-69)||(6243643-6243693)
chr4 (90-171)||(33604537-33604618)
chr4 (26-75)||(54106487-54106536)
chr4 (26-78)||(5535723-5535775)
chr4 (24-92)||(29006830-29006898)
chr4 (19-74)||(24941183-24941238)
chr4 (90-169)||(29644955-29645034)
chr4 (24-75)||(54106552-54106603)
chr4 (25-75)||(12596688-12596738)
chr4 (31-93)||(41346461-41346523)
chr4 (25-75)||(46779372-46779421)
chr4 (25-78)||(2440919-2440972)
chr4 (24-73)||(7740567-7740616)
chr4 (25-78)||(19934716-19934769)
chr4 (28-73)||(21142171-21142216)
chr4 (28-65)||(29224012-29224049)
chr4 (25-78)||(54164891-54164944)
chr4 (26-75)||(54508181-54508230)
chr4 (26-75)||(54922278-54922327)
chr4 (25-73)||(4406319-4406367)
chr4 (26-78)||(11796663-11796715)
chr4 (91-171)||(16696488-16696568)
chr4 (26-78)||(26636519-26636571)
chr4 (25-73)||(35005133-35005181)
[»] scaffold0024 (2 HSPs)
scaffold0024 (25-95)||(120137-120207)
scaffold0024 (24-78)||(120222-120276)
[»] scaffold0039 (2 HSPs)
scaffold0039 (25-78)||(54466-54519)
scaffold0039 (19-81)||(54394-54456)
[»] scaffold0007 (2 HSPs)
scaffold0007 (25-78)||(246804-246857)
scaffold0007 (19-76)||(246867-246924)
[»] scaffold0536 (2 HSPs)
scaffold0536 (19-78)||(4022-4081)
scaffold0536 (25-78)||(3959-4012)
[»] scaffold0027 (1 HSPs)
scaffold0027 (22-78)||(17176-17231)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 53)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 38835593 - 38835260
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtattaattataaaacgaatgatgtgtac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  38835593 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtgattgaatggtgtattaattataaaacgaatgatgtgtac 38835494  T
Q  119 ggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtcttatcaaccgtaactaaattttgagtacacaatgtttatggaattgtgtt 218  Q
    |||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38835493 ggtctgaatccatttaagcatccaaatgaggtgctgcattgtggatggtcttatcaaccataactaaattttgagtacacaatgtttatggaattgtgtt 38835394  T
Q  219 cctgttttaattttagttttaagaggcattgaaaacttg---nnnnnnnnnnctgaagaggctgaaaacttgttttattaaagcatcatattcatgtgtg 315  Q
    |||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||    
T  38835393 cctgttttaattttagttttaagaggcattgaaaacttgtttttttttttttttgaagaggctgaaaacttgttttattaaagcatcatattcatgtgtg 38835294  T
Q  316 cccttcaagagcaaagcatcacgtggccacctct 349  Q
    |||||| |||||||||||||||||||||||||||    
T  38835293 cccttcgagagcaaagcatcacgtggccacctct 38835260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 3851435 - 3851494
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3851435 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 3851494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 37944674 - 37944750
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtatta 95  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || ||||| |||||||    
T  37944674 atatgtcacatacatcattaattgaatgtatctaaaaaataaatttttgcttatattagtgaccgaatgttgtatta 37944750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 43446927 - 43446865
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  43446927 atatgtcacatacatcattaattaaatgtatctaaaaagtaaatttttgcttatattagtaac 43446865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 11262400 - 11262459
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  11262400 atatgtcacatacatcattaattgaatgtatctacaaaatgaatttttgcttatattagt 11262459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 15712189 - 15712132
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  15712189 atatgtcacatacatcattaattgaatgtatctaaaaaatggatttttgcttatatta 15712132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 19531369 - 19531292
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtattaa 96  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || || | | ||||||||||    
T  19531369 atatgtcacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatatttgtgaccggagggtgtattaa 19531292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 42013894 - 42013950
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  42013894 atatgtcacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatatt 42013950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 37944665 - 37944611
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  37944665 tcacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 37944611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 11262390 - 11262337
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  11262390 cacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 11262337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 19531379 - 19531432
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  19531379 cacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 19531432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 42013884 - 42013831
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  42013884 cacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 42013831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 3851425 - 3851372
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  3851425 cacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 3851372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 23914903 - 23914850
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  23914903 cacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 23914850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 26300173 - 26300120
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||||||||    
T  26300173 cacatacatcattaattgaatgtatctaaaaagtaaatttttgcttatattagt 26300120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 873495 - 873574
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtct 169  Q
    |||||||||||||||||||||  |||||||||| |   || ||||||||||||||||  ||| |||||||||||||||||    
T  873495 gtattaattataaaacgaatggcgtgtacggtcggggcccgtttaagcacccaaatagagtgctgcattgtggatggtct 873574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 8737010 - 8736931
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtct 169  Q
    |||||||||||||||||||||| |||||| |||   |  ||||||||||||||||||  ||| |||||||||||||||||    
T  8737010 gtattaattataaaacgaatgacgtgtacagtcgagactcatttaagcacccaaatagggtgctgcattgtggatggtct 8736931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 8961281 - 8961214
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||||||||||| |||| | ||||||    
T  8961281 cacatacattattaattgaatgtatctaaagagtgaatttttgcttatattagtgactggagggtgta 8961214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 23914913 - 23914972
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||||||    
T  23914913 atatgtcacatacatccttaaatgaatgtatcttaaaagtgaatttttgcttatattagt 23914972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 13311246 - 13311320
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||||| |||||||||||||||| ||||||||||||| ||  |||||| ||||||||||| || ||| |||||||    
T  13311246 atatgttacatacatcattaattgaatgtatctaaaagatagatttttacttatattagtgaccgaagggtgtat 13311320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 35969197 - 35969137
Alignment:
Q  19 atatgtcacatacatcattaatta-aatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||| |||||||||||||||||  |||||||||||||| || ||||||||||||||||||    
T  35969197 atatgccacatacatcattaatttgaatgtatctaaaaagtggatttttgcttatattagt 35969137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 35969208 - 35969260
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||| |||||||| |||||||||||||| ||||||||| |||||||||||    
T  35969208 acatacaccattaattgaatgtatctaaaaagtgaatttttacttatattagt 35969260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 13157405 - 13157463
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||| |||||||||||||||||| ||||| | |||||| |||||||||||||||||||||    
T  13157405 atatatcacatacatcattaattgaatgttt-taaaaagtgaatttttgcttatattagt 13157463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 26300183 - 26300242
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||| |||||||||||||| |||||||||||||| | || |||| |||||||||||    
T  26300183 atatgtcatatacatcattaattgaatgtatctaaaaagtaaaattttacttatattagt 26300242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 6763778 - 6763828
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||| |||| ||||| |||||| ||||||||||||||||||    
T  6763778 atacatcattaattgaatgaatctagaaaatggatttttgcttatattagt 6763828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 22581988 - 22581939
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  22581988 acatacataatttattaaatgaatctaaaatatgaatttttgcttatatt 22581939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 25408604 - 25408555
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||||||||    
T  25408604 acatacatcatttattgaatgaatctaaaatatgaatttttgcttatatt 25408555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 42555043 - 42554990
Alignment:
Q  93 ttaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaata 146  Q
    |||||||||||| |||||| |||||||||| | | |||||||||||||||||||    
T  42555043 ttaattataaaatgaatgacgtgtacggtcgggacccatttaagcacccaaata 42554990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 11172053 - 11172089
Alignment:
Q  21 atgtcacatacatcattaattaaatgtatctaaaaaa 57  Q
    ||||||||||||||||||||| |||||||||||||||    
T  11172053 atgtcacatacatcattaattgaatgtatctaaaaaa 11172089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 13157392 - 13157344
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||||||||||| ||| |||||||||| || ||||||||||||||||    
T  13157392 atacatcattaattgaatatatctaaaaagtggatttttgcttatatta 13157344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 27895958 - 27895906
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||    
T  27895958 acatacatcatttattaaatgaatctaaaaaatgaacttttgtttataatagt 27895906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 37870089 - 37870168
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatga-atttttgcttatattagtaactgaatggtgtattaatt 98  Q
    ||||||||||| ||||||||||| ||| |||||||||| ||| |||||||||||||||||| || | |  |||||||||||    
T  37870089 atatgtcacattcatcattaattgaatatatctaaaaa-tgagatttttgcttatattagtgaccggaatgtgtattaatt 37870168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 12646585 - 12646632
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||| |||||||| ||||||||| | ||||||||||||||||    
T  12646585 atacatcatttattaaatgaatctaaaaagtaaatttttgcttatatt 12646632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 14064887 - 14064937
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||||||||| |||| ||||||||| | ||||||||||||||||    
T  14064887 tcacatacatcattaattgaatgaatctaaaaagt-aatttttgcttatatt 14064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 15712199 - 15712250
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||| ||||||| |||||| |  ||||||||||||||||    
T  15712199 cacatacatcattaattgaatgtatttaaaaagttgatttttgcttatatta 15712250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 32813730 - 32813809
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtct 169  Q
    |||||||||| ||||| |||||||||||| | |  || |||||||||||| |||||   ||| |||||||||||||||||    
T  32813730 gtattaattacaaaacaaatgatgtgtactgccgaaacccatttaagcactcaaatggggtgctgcattgtggatggtct 32813809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 37870069 - 37870026
Alignment:
Q  35 attaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||| |||||||||||||||||  |||||||||||||||||    
T  37870069 attaattgaatgtatctaaaaaatggttttttgcttatattagt 37870026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 38835606 - 38835657
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaa-tttttgcttatattagt 78  Q
    |||||||||||||| ||||||| |||||| |||| |||||||||||||||||    
T  38835606 atacatcattaattgaatgtatttaaaaagtgaattttttgcttatattagt 38835657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 43447464 - 43447499
Alignment:
Q  43 aatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||| |||||||||||||||||||||    
T  43447464 aatgtatctaaaaagtgaatttttgcttatattagt 43447499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 238805 - 238859
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaa 80  Q
    |||||||||||| ||| |||| || |||||||||||||||||| |||| ||||||    
T  238805 acatacatcatttattcaatgaatataaaaaatgaatttttgcctataatagtaa 238859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 8222005 - 8221956
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||| |||||| | |||||||||||| |||||||||||||    
T  8222005 cacatacatcattaaataaatgaacctaaaaaatgaa-ttttgcttatatt 8221956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 25408621 - 25408671
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||| ||| |||| |||||||| || ||||||||||||||||    
T  25408621 cacatacatcatttattgaatgaatctaaaacataaatttttgcttatatt 25408671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 33652480 - 33652430
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatat 74  Q
    |||||||||||||| ||| |||| |||||||| |||||||||| |||||||    
T  33652480 tcacatacatcatttattgaatggatctaaaacatgaattttttcttatat 33652430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 4087840 - 4087759
Alignment:
Q  91 tattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtcttat 172  Q
    ||||||||||||||||||||||||| || ||| | | || |||||||||| ||||    || | ||||||||||||||||||    
T  4087840 tattaattataaaacgaatgatgtgaacagtcgggacccgtttaagcacctaaatggattgctccattgtggatggtcttat 4087759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 8961291 - 8961348
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||||||||| ||||||| |||| | |  ||||||| ||||||||    
T  8961291 atatgtcacatacatcattaattgaatgtatttaaacagtagatttttgtttatatta 8961348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 22474017 - 22474065
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||||| | |||| |||||||||||||| |||||||||||||    
T  22474017 acatacatcattaaatgaatgaatctaaaaaatgaa-ttttgcttatatt 22474065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 37067846 - 37067911
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||||||||||||||| || ||||||||  |  ||||||||||||| |||||||  ||||||||||    
T  37067846 atacatcattaattaattgaatctaaaatgtagatttttgcttataatagtaaccaaatggtgtat 37067911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 1098706 - 1098758
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||| ||| |||||||| ||||||||||| || ||||||||||| ||||    
T  1098706 acatacattatttattaaatgaatctaaaaaataaacttttgcttataatagt 1098758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 12165346 - 12165298
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    |||||||||||||||||||||| ||||||||| | ||  ||||||||||    
T  12165346 cacatacatcattaattaaatgaatctaaaaagtcaaaatttgcttata 12165298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 12750194 - 12750246
Alignment:
Q  23 gtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||| ||| ||| |||| || ||||| |||||||||||||||||||    
T  12750194 gtcacatacattatttattgaatgaatttaaaacatgaatttttgcttatatt 12750246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 15311939 - 15311991
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaa 80  Q
    |||||||||| |||||||| |||||||||||  |||||| |||||| ||||||    
T  15311939 atacatcatttattaaatgaatctaaaaaatagatttttccttataatagtaa 15311991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 26045319 - 26045271
Alignment:
Q  33 tcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    ||||||||| |||| |||||||| || |||||||||||||| |||||||    
T  26045319 tcattaattgaatgaatctaaaatataaatttttgcttataatagtaac 26045271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 27895972 - 27896032
Alignment:
Q  23 gtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactg 83  Q
    ||||||||||||||| |||||||| | ||||||| | |||||||| || || |||||||||    
T  27895972 gtcacatacatcatttattaaatgaacctaaaaagttaatttttgtttgtaatagtaactg 27896032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 30902341 - 30902279
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  30902341 atatgtcacatacatcattaattgaatgtatttaaaaaatgaatttttgcttatattagtaac 30902279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 38594416 - 38594475
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  38594416 atatgtcacatacatcattaattgaatgtatctaaaaaatagatttttgcttatattagt 38594475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 38598012 - 38598071
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  38598012 atatgtcacatacatcattaattgaatgtatctaaaaaatagatttttgcttatattagt 38598071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 43426700 - 43426757
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||    
T  43426700 atatgtcacatatatcattaattgaatgtatctaaaaaataaatttttgcttatatta 43426757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 34248476 - 34248424
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  34248476 acatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 34248424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 34248487 - 34248546
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  34248487 atatgtcagatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 34248546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 1981056 - 1981115
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatga-atttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  1981056 atatgtcacatacatcattaattgaatgtatct-aaaaatgagatttttgcttatattagt 1981115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 3887905 - 3887964
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaa-atgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  3887905 atatgtcacatacatcattaattgaatgtatctaaaaagatg-atttttgcttatattagt 3887964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 25278237 - 25278185
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  25278237 tcacatacatcattaattaaatgtatctaaaaggtaaatttttgcttatatta 25278185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 5574178 - 5574119
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| |||||||||| ||||||| | |||| |||||||||||||||||||||    
T  5574178 atatgtcacatatatcattaattgaatgtattttaaaagtgaatttttgcttatattagt 5574119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 5574188 - 5574241
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  5574188 cacatacatcattaattgaatgtatctaaaaagtagatttttgcttatattagt 5574241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 30902351 - 30902404
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||| |||||||||| |||||||||||||| | |||||||||||||||||||    
T  30902351 cacatatatcattaattgaatgtatctaaaaagtaaatttttgcttatattagt 30902404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 31425385 - 31425458
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtgga 163  Q
    |||||||||||||||||||||| || ||| ||| | | |||||||||||||||||||  ||| |||||||||||    
T  31425385 gtattaattataaaacgaatgacgtatacagtcgggacccatttaagcacccaaatagggtgctgcattgtgga 31425458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 3887894 - 3887842
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||| |||||||||| ||||||||||||||||  ||||||||||||||||||    
T  3887894 acataaatcattaattgaatgtatctaaaaaatagatttttgcttatattagt 3887842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 6566987 - 6567046
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||||||    
T  6566987 atatgtcgcatacatcattaattgaatatatctaaatagtggatttttgcttatattagt 6567046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 43426690 - 43426623
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    ||||||||||||||||| ||||||| |||||| || |||||| ||||||||||| || ||| ||||||    
T  43426690 cacatacatcattaattgaatgtatttaaaaagtggatttttacttatattagtgaccgaagggtgta 43426623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 22373688 - 22373742
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatga-atttttgcttatattagt 78  Q
    ||||||||||||||| | |||||||||||||||| | ||||||||||||||||||    
T  22373688 cacatacatcattaactgaatgtatctaaaaaattagatttttgcttatattagt 22373742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 3123982 - 3124031
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||||||||    
T  3123982 acatacatcatttattgaatgaatctaaaacatgaatttttgcttatatt 3124031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 38618170 - 38618227
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||| |||||||||||||||||| ||||||||||| ||||  |||||| |||||||||    
T  38618170 atatatcacatacatcattaattgaatgtatctaacaaatagatttttacttatatta 38618227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 6566974 - 6566910
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    |||||| ||||||||||| |||||||||| ||| |||||||| |||||||| || ||| ||||||    
T  6566974 atacattattaattaaatatatctaaaaagtgattttttgctcatattagtgaccgaagggtgta 6566910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 41824322 - 41824270
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||| ||| ||| |||| |||||||||||||||||||||||||| ||||    
T  41824322 acatacataatttattgaatgaatctaaaaaatgaatttttgcttataatagt 41824270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 44274620 - 44274668
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatat 74  Q
    |||||||||||| ||| |||| ||||||||| |||||||||||||||||    
T  44274620 acatacatcatttattgaatgaatctaaaaagtgaatttttgcttatat 44274668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 22373678 - 22373619
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||| | |||||||||||||| ||| ||| ||||||||  ||||||||||||||||||    
T  22373678 atatgttatatacatcattaattgaatatatttaaaaaatatatttttgcttatattagt 22373619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 26836234 - 26836289
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    ||||| |||||| ||| |||| |||||||| ||| |||||||||||||||||||||    
T  26836234 acataaatcatttattgaatgaatctaaaatatggatttttgcttatattagtaac 26836289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 27881298 - 27881231
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||||||||||| ||| |||| || ||||| ||||||||||||||||||| || |||| | |||||||    
T  27881298 acatacatcatttattgaatgaatataaaacatgaatttttgcttatatttgtgactggagggtgtat 27881231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 43100793 - 43100758
Alignment:
Q  43 aatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||||||||||| ||||    
T  43100793 aatgtatctaaaaaatgaatttttgcttataatagt 43100758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 11342051 - 11342101
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||| |||||||| ||  ||||||||||||| ||||    
T  11342051 atacatcattaattaaatgaatctaaaatatagatttttgcttataatagt 11342101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 14308721 - 14308671
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||| ||| |||| |||||||| |||||| ||||||||||||    
T  14308721 cacatacatcatttattgaatgaatctaaaacatgaatgtttgcttatatt 14308671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 31619849 - 31619898
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||| |||||| ||||||||||| || |||||||||||||    
T  31619849 cacatacatcattaaataaatgaatctaaaaaatcaa-ttttgcttatatt 31619898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 14308725 - 14308774
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||| ||| |||| |||||||| |||| ||||||||||||||    
T  14308725 acatacatcatttattgaatgaatctaaaatatgattttttgcttatatt 14308774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 23378019 - 23378068
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    |||||||||||||| | |||||| |||||||| || ||||||||||||||    
T  23378019 tcacatacatcatttaataaatgaatctaaaatattaatttttgcttata 23378068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 7837153 - 7837094
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatga-atttttgcttatattagt 78  Q
    |||||||||||  |||||||||| |||||||||| ||||||| ||||||| ||||||||||    
T  7837153 atatgtcacatttatcattaattgaatgtatcta-aaaatgagatttttgtttatattagt 7837094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 15446859 - 15446923
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    |||||||||| | |||||| | ||||||||||||||||| |||||| |||| || ||||| ||||    
T  15446859 atacatcatttaataaatgaacctaaaaaatgaatttttacttataatagtgaccgaatgatgta 15446923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 59)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 34658454 - 34658381
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || | ||||||||    
T  34658454 atatgtcacatacatcattaattaaatgtatctgaaaagtgaatttttgcttatattagtgaccggatggtgta 34658381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 2352973 - 2353026
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2352973 cacatacatcattaattaaatgtatctaaaaaataaatttttgcttatattagt 2353026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 3384291 - 3384234
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  3384291 atatgtcacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatatta 3384234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 23944099 - 23944046
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23944099 cacatacatcattaattgaatgtatctaaaaaatgaatttttgcttatattagt 23944046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 35367549 - 35367609
Alignment:
Q  18 aatatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  35367549 aatatgtcacatacatcattaattgaatgtatctaaaaaatggatttttgcttatagtagt 35367609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 37734841 - 37734782
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  37734841 atatgtcacatacatcattaattgaatgtatcttaaaagtgaatttttgcttatattagt 37734782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 6667100 - 6667181
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtctta 171  Q
    ||||||| ||||||||||||||||||||| ||  | ||||||||||||||||||||   ||| |||||||||||||||||||    
T  6667100 gtattaactataaaacgaatgatgtgtacagtagggatccatttaagcacccaaatggagtgctgcattgtggatggtctta 6667181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 8258021 - 8258074
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  8258021 cacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 8258074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 14418129 - 14418186
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||    
T  14418129 atatgtcacatacatcattagttgaatgtatctaaaaagtgaatttttgcttatatta 14418186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 8258011 - 8257955
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  8258011 atatgtcacatacattattaattgaatgtatctaaaaagtgaatttttgcttatatt 8257955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 2349824 - 2349765
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  2349824 atatgtcacatgcatcattaattgaatgtatctaaaaaatggatttttgtttatattagt 2349765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 639861 - 639808
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  639861 cacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 639808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 4602722 - 4602775
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||| |||||||||| |||||||||||||||||||||||| |||||||||||    
T  4602722 cacatatatcattaattgaatgtatctaaaaaatgaatttttacttatattagt 4602775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 17490550 - 17490497
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||||||    
T  17490550 cacatatatcattaattaaatgtatctaaaaagtggatttttgcttatattagt 17490497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 31008321 - 31008268
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  31008321 cacatacatcattaattaaatgtatctaaaaagtagatttttgcttatattagt 31008268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 31008331 - 31008388
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  31008331 atatgttacatacatcattaattgaatgtatctaaaaagtggatttttgcttatatta 31008388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 33604069 - 33604122
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  33604069 cacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 33604122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 48022657 - 48022604
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  48022657 cacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 48022604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 639871 - 639930
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||||||    
T  639871 atatgtcacatacatccttaaatgaatgtatcttaaaagtgaatttttgcttatattagt 639930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 37734853 - 37734904
Alignment:
Q  27 catacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  37734853 catacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 37734904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 40262536 - 40262477
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||| |||||||||| || ||||||| ||||||||||    
T  40262536 atatgtcacatacatcattaattgaatatatctaaaaactggatttttgtttatattagt 40262477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 48022667 - 48022726
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||||||    
T  48022667 atatgtcacatacatccttaaatgaatgtatcttaaaagtgaatttttgcttatattagt 48022726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 38468765 - 38468831
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||||| || || | ||||||||    
T  38468765 acatacatcatttattaaatgtatctaaaatatgaattttttcttatatttgtgaccggatggtgta 38468831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 5856425 - 5856355
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    ||||||||| ||||||||||||| |||    |||||||||||||||||| ||||||||||||| ||| |||||||    
T  5856425 atatgtcacgtacatcattaattgaat----ctaaaaaatgaatttttgtttatattagtaaccgaagggtgtat 5856355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 6065539 - 6065592
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||| | || ||||||||||||||||||    
T  6065539 cacatacatcattaattgaatgtatctaaagagtggatttttgcttatattagt 6065592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 15439940 - 15440012
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtattaat 97  Q
    ||||||||| ||||||| ||||||| |||||| | ||||||||||||||||| |||| ||| |||||| ||||    
T  15439940 cacatacattattaattgaatgtatttaaaaagtcaatttttgcttatattaataaccgaagggtgtagtaat 15440012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 27206820 - 27206768
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||| |||||||||||||| ||  |||||||||||||||||    
T  27206820 acatacatcattaattgaatgtatctaaaaagtggttttttgcttatattagt 27206768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4060243 - 4060302
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||| ||| ||||||||||| ||||||||||||||||| |  ||||||||||||||||||    
T  4060243 atatctcaaatacatcattagttaaatgtatctaaaaagtagatttttgcttatattagt 4060302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 4602712 - 4602653
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| |||||||||| |||||||||||||| || | ||||| ||||||||||    
T  4602712 atatgtcacatatatcattaattgaatgtatctaaaaagtggaattttgtttatattagt 4602653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 6065529 - 6065470
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||| ||||||||||| |||||||||||||| |  | ||||||||||||||||    
T  6065529 atatgtcacatccatcattaattgaatgtatctaaaaagtagaattttgcttatattagt 6065470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 15439930 - 15439871
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| |||||||||| |||||||||| |||||  ||||||| ||||||||||    
T  15439930 atatgtcacatatatcattaattgaatgtatctacaaaatagatttttgtttatattagt 15439871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 27206831 - 27206890
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||| ||||||||||||||| |||||||||||| | |  ||||||||||||||||||    
T  27206831 atatgtcgcatacatcattaattgaatgtatctaaatagttgatttttgcttatattagt 27206890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 33604059 - 33604000
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||| |||| | ||||||||| |||| |||||||||| ||||||||||    
T  33604059 atatgtcacatacatccttaaatgaatgtatcttaaaagtgaatttttgtttatattagt 33604000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 3384300 - 3384354
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||| |||| |||||||||||||| |||||||||  ||||||||||    
T  3384300 tcacatacatcatcaattgaatgtatctaaaaagtgaatttttatttatattagt 3384354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 5431418 - 5431471
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||| ||| |||| ||||||||| | |||||||||||||||||||    
T  5431418 cacatacatcatttattgaatgaatctaaaaagttaatttttgcttatattagt 5431471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 5856435 - 5856488
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||| ||||||| ||||||| |||||| || ||||||||||||||||||    
T  5856435 cacatacataattaattgaatgtatttaaaaagtggatttttgcttatattagt 5856488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 21305096 - 21305051
Alignment:
Q  31 catcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||    
T  21305096 catcattaattgaatgtatctaaaaaatgaatttttatttatatta 21305051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 6508475 - 6508531
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    ||||||||| ||||| |||||| | |||||| || ||||||||||||||||||||||    
T  6508475 cacatacattattaaataaatgaacctaaaatataaatttttgcttatattagtaac 6508531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 1035967 - 1036018
Alignment:
Q  27 catacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||| |||||||||| |||| ||||| ||| |||||||||||||||||||||    
T  1035967 cataaatcattaattgaatgaatctagaaagtgaatttttgcttatattagt 1036018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 1811276 - 1811322
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatat 74  Q
    |||||||| | ||| |||| |||||||||||||||||||||||||||    
T  1811276 atacatcaattatttaatgaatctaaaaaatgaatttttgcttatat 1811322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 21321399 - 21321449
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||| ||||||||||||  ||||||  ||||||||||    
T  21321399 atacatcattaattaaatatatctaaaaaatatatttttatttatattagt 21321449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 34953977 - 34954027
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||| |||| |||||||| || |||||||||||||| ||||    
T  34953977 atacatcattaattgaatgaatctaaaatataaatttttgcttataatagt 34954027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 35838780 - 35838731
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||| | |||| |||||||||||||| |||||||||||||    
T  35838780 cacatacatcattaaatgaatgaatctaaaaaatgaa-ttttgcttatatt 35838731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 38834670 - 38834620
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||| ||| |||| ||||||||||| |||||||||||||| ||||    
T  38834670 atacatcatttatttaatgaatctaaaaaataaatttttgcttataatagt 38834620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 40262546 - 40262597
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||||| |  ||| || ||||||||||||||||||    
T  40262546 cacatacatcattaattaaatgtattt--aaagtggatttttgcttatattagt 40262597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 42914614 - 42914663
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||| |||||| ||||||||| |||| |||||||||||||    
T  42914614 cacatacatcattaaataaatgaatctaaaaagtgaa-ttttgcttatatt 42914663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 2349835 - 2349888
Alignment:
Q  26 acatacatcattaattaaatgtatct-aaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||| ||||||||| |||||||  |||||| |||||||||||    
T  2349835 acatacatcattaattgaatgtatctaaaaaaatagatttttacttatattagt 2349888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 4060233 - 4060180
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||| || ||||||| ||| |||||||||| || ||||||||||||||||||    
T  4060233 cacatatattattaattgaatatatctaaaaagtggatttttgcttatattagt 4060180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 10256843 - 10256790
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||| ||| |||| ||||||||| ||||||||| |||||| ||||    
T  10256843 cacatacatcatttattgaatgaatctaaaaagtgaattttttcttataatagt 10256790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 27939226 - 27939181
Alignment:
Q  48 atctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||||||||||||||||||||||||| |||| || ||||| |||||    
T  27939226 atctaaaaaatgaatttttgcttataatagtgaccgaatgatgtat 27939181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 34597582 - 34597529
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||  || |||| ||||||||| |||||||||||||||| ||||    
T  34597582 cacatacatcatttgttgaatgaatctaaaaagtgaatttttgcttataatagt 34597529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 43318093 - 43318134
Alignment:
Q  32 atcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    |||||| |||||||| |||||||||||||||| |||||||||    
T  43318093 atcatttattaaatgaatctaaaaaatgaattcttgcttata 43318134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 1035948 - 1035896
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| ||| |||| ||||| ||| || ||||||||||||||||||    
T  1035948 acatacatcatttattgaatgaatctagaaactggatttttgcttatattagt 1035896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 3906840 - 3906892
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||| |||| |||||||| ||||||||||| |||||||| ||||| ||||    
T  3906840 acatacaccatttattaaatgaatctaaaaaataaatttttgtttataatagt 3906892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 5431402 - 5431350
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||| ||||| ||| |||| ||||||||| |||||||||||||||| ||||    
T  5431402 acatacttcatttattgaatgaatctaaaaagtgaatttttgcttataatagt 5431350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 19175666 - 19175734
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    ||||||||||||| ||| |||| ||||||||| |  ||||||||||||| |||| |||| | |||||||    
T  19175666 cacatacatcatttattgaatgaatctaaaaagtagatttttgcttataatagtgactggagggtgtat 19175734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 34597591 - 34597639
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    |||||||||||||  || |||| ||||||||| ||||||||||||||||    
T  34597591 cacatacatcatttgttgaatgaatctaaaaagtgaatttttgcttata 34597639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 42660416 - 42660364
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaa 80  Q
    |||||||||| ||| |||| ||||||||||| || ||||||||||| ||||||    
T  42660416 atacatcatttattgaatgaatctaaaaaatcaacttttgcttataatagtaa 42660364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 43728264 - 43728312
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    |||| |||||||||||| |||| |||||||| || ||||||||||||||    
T  43728264 cacacacatcattaatttaatgaatctaaaatattaatttttgcttata 43728312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 29512209 - 29512285
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtattaattata 101  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | | |||||| ||||||||    
T  29512209 cacatacatcattaattaaatgtatctaaaaaataaatttttgcttatgttagtaaccggagggtgtaataattata 29512285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 29565177 - 29565118
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  29565177 atatgtcacatacatcattaattaaatgtatctaaaaaattgatttttgcttatattagt 29565118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 18940031 - 18939972
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  18940031 atatatcacatacatcattaattaaatgtatttaaaaaatgaatttttacttatattagt 18939972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 38455237 - 38455296
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  38455237 atatgtcacatacatcattaattaaatgtatctaaaaagtaaatttttgtttatattagt 38455296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 51239315 - 51239374
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  51239315 atatgtcacatacatcattaattgaatgtatctaaaaaatagatttttgcttatattagt 51239374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 52168351 - 52168292
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  52168351 atatgccacatacatcattaattaaatgtatctaaaaagtaaatttttgcttatattagt 52168292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 51617399 - 51617321
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtattaat 97  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||| || | | |||||||||||    
T  51617399 atatgtcacatacatcattaattgaatgtatctaaaaagtggatttttggttatattagtgaccggagggtgtattaat 51617321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 29720154 - 29720207
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  29720154 cacatacatcattaattaaatgtatttaaaaagtgaatttttgcttatattagt 29720207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 33412542 - 33412611
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||||||||||||||||| |||||||||||||| || |||||||||||||||||| |||| | |||||||    
T  33412542 tcacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgactggagggtgtat 33412611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 52931703 - 52931650
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  52931703 cacatacatcattaattgaatgtatctaaagaatgaatttttgcttatattagt 52931650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 50260995 - 50260939
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  50260995 cacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtaac 50260939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 41349728 - 41349669
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||    
T  41349728 atatgtcacatacatcattaattgaatgtattttaaaagtgaatttttgcttatattagt 41349669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 52315462 - 52315521
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||    
T  52315462 atatgtcacatacatcattaattgaatgtatctaaaaagtggatttttgcttatactagt 52315521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 42449168 - 42449114
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  42449168 tcacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 42449114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 36362676 - 36362733
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||    
T  36362676 atatgtcacatacatcattaattgaatgtatctaaaaagtagatttttgcttatatta 36362733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 29720227 - 29720279
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattag 77  Q
    |||||| |||||||||| |||| ||||||||||||||||||||||||||||||    
T  29720227 cacatatatcattaattgaatgcatctaaaaaatgaatttttgcttatattag 29720279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 17552545 - 17552486
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||| ||||||| ||||||| | |||| |||||||||||||||||||||    
T  17552545 atatgtcacatacattattaattgaatgtattttaaaagtgaatttttgcttatattagt 17552486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 33412528 - 33412478
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatat 74  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  33412528 tcacatacatcattaattgaatgtatctaaaaagtggatttttgcttatat 33412478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 41349738 - 41349792
Alignment:
Q  25 cacatacatcattaattaaatgtatct-aaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  41349738 cacatacatcattaattgaatgtatctaaaaaaatggatttttgcttatattagt 41349792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 18940047 - 18940100
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| ||||||| ||||| || |||||||||||||||||||    
T  18940047 cacatacatcattaattgaatgtatataaaatataaatttttgcttatattagt 18940100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 22173863 - 22173806
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||||||||| |||||||||||||  |  ||||||||||||||||    
T  22173863 atatgtcacatacatcattaattgaatgtatctaaaatgtagatttttgcttatatta 22173806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 2128439 - 2128507
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    ||||||||||||| ||| |||| |||||||| ||||||||||||||||| |||| |||| | |||||||    
T  2128439 cacatacatcatttattgaatgaatctaaaacatgaatttttgcttataatagtgactggagggtgtat 2128507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 24722749 - 24722681
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    ||||||||||||| | |||||| |||||||| || |||||||||||||| |||| |||||| |||||||    
T  24722749 cacatacatcatttaataaatgaatctaaaatattaatttttgcttataatagtgactgaagggtgtat 24722681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 52315452 - 52315400
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattag 77  Q
    ||||||||||||||||| ||| |||||||||| || |||||||||||||||||    
T  52315452 cacatacatcattaattgaatatatctaaaaagtggatttttgcttatattag 52315400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 13083948 - 13083998
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||||    
T  13083948 tcacatacatcattaattaaatgaatctaaaaaat-catttttgcttatatt 13083998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 29565187 - 29565238
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||| |||||||||| ||||||| |||||| |||||||||||||||||||    
T  29565187 cacatatatcattaattgaatgtatgtaaaaagtgaatttttgcttatatta 29565238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 38455227 - 38455176
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||| | |||||||||||||| || ||||||||||||||||    
T  38455227 cacatacatcattaaattaatgtatctaaaaagtggatttttgcttatatta 38455176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 42449177 - 42449236
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||| ||||||||||| ||||||| ||||||||  ||||||| ||||||||||    
T  42449177 atatgtcacattcatcattaattgaatgtatttaaaaaatatatttttgtttatattagt 42449236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 21403974 - 21404025
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||  |||||| ||||||||||||||||||    
T  21403974 cacatacatcattaattgaatgtatct--aaaatggatttttgcttatattagt 21404025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 22153131 - 22153205
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||| ||| |||||| |||||||||||||||||||||| | |||||||  |||||||| |||| ||||| |||||    
T  22153131 atatatcatatacattattaattaaatgtatctaaaaagtaaatttttatttatattaataaccgaatgatgtat 22153205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 29512199 - 29512162
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaa 56  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  29512199 atatgtcacatacatcattaattgaatgtatctaaaaa 29512162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 36362666 - 36362613
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||||| |||| | |  ||||||||||||||||||    
T  36362666 cacatacatcattaattaaatgtatttaaagagttgatttttgcttatattagt 36362613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 51617409 - 51617462
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||| |||||||| |||||||||||||| || | ||||||||||||||||    
T  51617409 cacatacaacattaattgaatgtatctaaaaagtggaattttgcttatattagt 51617462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 52931713 - 52931750
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaa 56  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  52931713 atatgtcacatacatcattaattgaatgtatctaaaaa 52931750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 53717499 - 53717580
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtctta 171  Q
    ||||||||||||||||||||||| ||||| ||  | ||||||||||||||| | ||    |||||||||||||||| |||||    
T  53717499 gtattaattataaaacgaatgatatgtacagttgggatccatttaagcacctagatgggatgttgcattgtggatgatctta 53717580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 37492449 - 37492393
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||| ||||||| |||||| |||||||||||||||| |||||||  |||||||    
T  37492449 atatgtcatatacatcgttaattgaatgtatctaaaaaataaatttttatttatatt 37492393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 50261005 - 50261065
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaa-tttttgcttatattagt 78  Q
    |||||||||||||||| |||| | ||||||||| |||| |||| |||||||||||||||||    
T  50261005 atatgtcacatacatccttaaatgaatgtatcttaaaagtgaattttttgcttatattagt 50261065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 21403964 - 21403906
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||| |||||||||| |  ||||||| ||||||||||    
T  21403964 atatgtcacatacatcattaattgaat-tatctaaaaagtagatttttgtttatattagt 21403906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 22099847 - 22099788
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||| ||||||| |||||||||||||| |  ||||||| ||| ||||||    
T  22099847 atatgtcacatacattattaattgaatgtatctaaaaagtagatttttgtttaaattagt 22099788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 29720144 - 29720085
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| |||| ||||| |||| ||||||||| || ||||||| ||||||||||    
T  29720144 atatgtcacatatatcaataattgaatgcatctaaaaagtggatttttgattatattagt 29720085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 32759024 - 32758977
Alignment:
Q  29 tacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||| |||||||||||| |||||||  ||||||||    
T  32759024 tacatcattaattaaatatatctaaaaaataaatttttatttatatta 32758977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 32759038 - 32759097
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||| ||||||| |||||||||||||| |||||||||| | |||||||  ||||||||||    
T  32759038 atatatcacatatatcattaattaaatatatctaaaaagtaaatttttatttatattagt 32759097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 52168361 - 52168408
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttat 72  Q
    ||||||||||||||| | |||||||||||||| || ||||||||||||    
T  52168361 cacatacatcattaaattaatgtatctaaaaagtggatttttgcttat 52168408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 4639783 - 4639709
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggat 164  Q
    |||||||||||||||| ||||| |||||| | | || ||| ||||| ||||||||||| ||| | ||||||||||    
T  4639783 gtattaattataaaacaaatgacgtgtacagccggagtccgtttaaacacccaaataaagtgctccattgtggat 4639709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 4980352 - 4980398
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttat 72  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||    
T  4980352 acatacatcatttattgaatgaatctaaaatatgaatttttgcttat 4980398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 10872753 - 10872803
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||| |||| |||||||| || |||||||||||||| ||||    
T  10872753 atacatcattaattgaatgaatctaaaatataaatttttgcttataatagt 10872803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 36790294 - 36790371
Alignment:
Q  94 taattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtcttat 172  Q
    |||||||||||| |||||  ||||| ||| | |||||||||| ||||||||||| ||||| || ||| |||||||||||    
T  36790294 taattataaaacaaatgagatgtacagtcgggatccatttaaacacccaaataaggtgttacagtgt-gatggtcttat 36790371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 40891477 - 40891555
Alignment:
Q  91 tattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtct 169  Q
    |||||||||||||||||| || || ||| ||| ||||||||||||||| |||| |   ||| |||||||| ||||||||    
T  40891477 tattaattataaaacgaacgacgtatacagtcagaatccatttaagcatccaatttgggtgctgcattgtagatggtct 40891555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 105435 - 105362
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtattaat 97  Q
    |||||||||||||| ||| |||| ||||||||| |||||||||| ||| | |||| || | |||| ||||||||    
T  105435 tcacatacatcatttattcaatgaatctaaaaagtgaatttttgtttacaatagtgaccggatggagtattaat 105362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 4980334 - 4980285
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||| |||||| ||| |||| |||||||| |||||||||||||||||||    
T  4980334 acatatatcatttattgaatgaatctaaaatatgaatttttgcttatatt 4980285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 26367532 - 26367483
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||| ||| |||| |||||||| ||| |||||||||||||||    
T  26367532 acatacatcatttattgaatgaatctaaaacatggatttttgcttatatt 26367483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 31706674 - 31706625
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||  ||| |||| |||||||| |||||||||||||||||||    
T  31706674 acatacatcatatattgaatgaatctaaaatatgaatttttgcttatatt 31706625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 52931751 - 52931800
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatat 74  Q
    ||||||||||||||||| |||||||||||||| |  |||||| |||||||    
T  52931751 cacatacatcattaattgaatgtatctaaaaagtagatttttacttatat 52931800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 22497013 - 22496945
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    ||||||||||||| | | |||| |||||||| || |||||||||||||| |||| |||| | |||||||    
T  22497013 cacatacatcatttaatgaatgaatctaaaatattaatttttgcttataatagtgactggagggtgtat 22496945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 9056099 - 9056152
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9056099 cacatacatcattaattaaatgtatctaaaaagtgaatttttgcttatattagt 9056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 7377626 - 7377686
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatct-aaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  7377626 atatgtcacatacatcattaattgaatgtatctaaaaaaatgaatttttgcttatattagt 7377686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 9056089 - 9056033
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  9056089 atatgtcacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatatt 9056033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 9808450 - 9808501
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9808450 cacatacataattaattaaatgtatctaaaaaatgaatttttgcttatatta 9808501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 16242870 - 16242951
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtctta 171  Q
    |||||||||||||||||||||| |||||||||  | | |||||||||||||||||||   || |||||||||||||||||||    
T  16242870 gtattaattataaaacgaatgacgtgtacggttgggacccatttaagcacccaaataggatgctgcattgtggatggtctta 16242951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 26014631 - 26014578
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  26014631 cacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 26014578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 1739637 - 1739696
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||    
T  1739637 atatgttacatacatcattaattgaatgtatctaaaaagtaaatttttgcttatattagt 1739696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 13228938 - 13228864
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||||||||||| |||||||||| ||||||| ||||||||| ||||||| |||||||||| || ||| |||||||    
T  13228938 atatgtcacatatatcattaattgaatgtatttaaaaaatggatttttgtttatattagtgaccgaagggtgtat 13228864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 13211311 - 13211368
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||| |||||||||    
T  13211311 atatgtcacatacatcattaattgaatgtatctaaaaaatagatttttacttatatta 13211368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 14381300 - 14381247
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  14381300 cacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 14381247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 15285721 - 15285664
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||||    
T  15285721 atatgtcacatacatcattaattaaatgtatttaaaaaataaatttttatttatatta 15285664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 15466090 - 15466033
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||||    
T  15466090 atatgtcacatacatcattaattaaatgtatttaaaaaataaatttttatttatatta 15466033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 40098838 - 40098891
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  40098838 cacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 40098891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 7377616 - 7377568
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  7377616 cacatacatcattaattgaatgtatctaaaaagtgaatttttgcttata 7377568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 40098828 - 40098752
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtatta 95  Q
    |||||||||||| |||||||||| |||||||||||||| |  |||||||||||||||||| || | | |||||||||    
T  40098828 atatgtcacatatatcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgtatta 40098752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 13211301 - 13211250
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||    
T  13211301 cacatatatcattaattaaatgtatctaaaaaataaatttttacttatatta 13211250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 14381310 - 14381369
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||| |||||||||||||||||| |||||||||||||| || ||||||| ||||||||||    
T  14381310 atatatcacatacatcattaattgaatgtatctaaaaagtggatttttgtttatattagt 14381369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 7428956 - 7428894
Alignment:
Q  23 gtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaa 85  Q
    ||||||||||||||| ||| |||| | |||||| ||||||||||||||||| |||||||||||    
T  7428956 gtcacatacatcatttattgaatgaacctaaaatatgaatttttgcttataatagtaactgaa 7428894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 37716146 - 37716220
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||| |||||||||||||||||| |||||||||||||||| |||||||  |||||| ||| || | |||||||||    
T  37716146 atatatcacatacatcattaattgaatgtatctaaaaaataaatttttatttatatcagtgaccggatggtgtat 37716220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 26014641 - 26014713
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    ||||||||||||||| ||||||| | |||||||||||| || |||||||||||||||||| |||| | ||||||    
T  26014641 atatgtcacatacattattaattga-tgtatctaaaaagtggatttttgcttatattagtgactggaaggtgta 26014713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 13228948 - 13228985
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaat 62  Q
    |||||||||||||||||||||||||||||||| |||||    
T  13228948 cacatacatcattaattaaatgtatctaaaaagtgaat 13228985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 29424062 - 29424111
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||||||||    
T  29424062 acatacatcatttattgaatgaatctaaaatatgaatttttgcttatatt 29424111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 33574865 - 33574918
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||  || ||||||| ||||||||||    
T  33574865 cacatacatcattaattgaatgtatctaaaatgtggatttttgtttatattagt 33574918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 24418959 - 24419006
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    |||||||||||| ||| |||| ||||||||| ||||||||||||||||    
T  24418959 acatacatcatttattgaatgaatctaaaaagtgaatttttgcttata 24419006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 11692110 - 11692057
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||| ||||| |||||||| || ||||||| ||||||||||    
T  11692110 tcacatacatcattaatt-aatgtgtctaaaaagtggatttttgtttatattagt 11692057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 12955883 - 12955834
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||| |||||| | |||||||||||| |||||||||||||    
T  12955883 cacatacatcattaaataaatgaacctaaaaaatgaa-ttttgcttatatt 12955834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 24820374 - 24820428
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||| ||| |||| |||||||||  ||||||||||||||| ||||    
T  24820374 tcacatacatcatttattgaatgaatctaaaaagagaatttttgcttataatagt 24820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 37716135 - 37716085
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||| |||||||||||||| |||||||||| |||| |||| |||||||||    
T  37716135 acatatatcattaattaaatatatctaaaaagtgaaattttacttatatta 37716085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 2810075 - 2810039
Alignment:
Q  44 atgtatctaaaaaatgaatttttgcttatattagtaa 80  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  2810075 atgtatttaaaaaatggatttttgcttatattagtaa 2810039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 10117051 - 10117115
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    |||||||||||||| |||| ||||||||  | |||||||||||||| |||| || | ||||||||    
T  10117051 atacatcattaattgaatgaatctaaaatgtaaatttttgcttataatagtgaccggatggtgta 10117115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 1706914 - 1706979
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  1706914 atacatcattaaatgaatgtatctaaaaaatgaatttttgcttatattagtgactaaatggtgtat 1706979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 29498855 - 29498912
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  29498855 atatgtcacatacataattaattaaatgtatctaaaaaatggatttttgcttatatta 29498912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 1706901 - 1706842
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  1706901 atatgtcacatacatcattaattgaatgtatctaaaaaataaatttttacttatattagt 1706842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 22106739 - 22106798
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  22106739 atatgtcacatacatcattaattgaatgtatctaaaaaatgaaattttgtttatattagt 22106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 40529612 - 40529553
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  40529612 atatgtcacatacatcattaattgaatgtatctaaaaaatgaaattttgtttatattagt 40529553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 716311 - 716368
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  716311 tcacatacatcattaattgaatgtatctaaaaattaaatttttgcttatattagtaac 716368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 18234417 - 18234476
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||    
T  18234417 atatgtcacatacatcattaattgaatgtatctaaaaattaaatttttgtttatattagt 18234476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 38238856 - 38238915
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  38238856 atatgtcacatacatcattaattgaatgtatctaaaaagtagatttttgcttatattagt 38238915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 46944012 - 46943953
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||    
T  46944012 atatgtcacatacatcattaattgaatgtatctaaaaagtggatttttgtttatattagt 46943953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 34703524 - 34703574
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  34703524 atacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 34703574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 40416987 - 40417037
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  40416987 atacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 40417037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 4406478 - 4406426
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  4406478 acatacatcattaattgaatgtatctaaaaagtgaatttttgcatatattagt 4406426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 29368326 - 29368246
Alignment:
Q  91 tattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtctta 171  Q
    |||||||||||||||||||||||||||| | | | |||| ||||| |||||||||   ||| |||||||||||||||||||    
T  29368326 tattaattataaaacgaatgatgtgtacagacgggatccgtttaaacacccaaatggggtgctgcattgtggatggtctta 29368246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 25079279 - 25079338
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| |||||||||||||| |  ||||||| ||||||||||    
T  25079279 atatgtcacatacatcattaattgaatgtatctaaaaagtagatttttgtttatattagt 25079338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 25079270 - 25079216
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  25079270 tcacatacatcattaattgaatgtatctaaaaagtagatttttgcttatattagt 25079216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 27554560 - 27554506
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||| |||||||||||||||| |||||||  ||||||||||    
T  27554560 tcacatacatcattaattgaatgtatctaaaaaataaatttttatttatattagt 27554506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 38238846 - 38238792
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatg-aatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  38238846 cacatacatcattaattgaatgtatctaaaaagtgaaatttttgcttatattagt 38238792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 22106729 - 22106676
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| ||| ||||||||||||  ||||||||||||||||||    
T  22106729 cacatacatcattaattgaatatatctaaaaaatagatttttgcttatattagt 22106676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 34703511 - 34703454
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||| ||||||||||| ||||||||||||   |||||||||||||||||||    
T  34703511 atatgtcacatgcatcattaattgaatgtatctaaattgtgaatttttgcttatatta 34703454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 40416974 - 40416917
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||| ||||||||||| ||||||||||||   |||||||||||||||||||    
T  40416974 atatgtcacatgcatcattaattgaatgtatctaaattgtgaatttttgcttatatta 40416917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 40529622 - 40529675
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| ||| ||||||||||||  ||||||||||||||||||    
T  40529622 cacatacatcattaattgaatatatctaaaaaatagatttttgcttatattagt 40529675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 21387637 - 21387585
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||| |||| ||||| |||||| ||||||||||||||||||    
T  21387637 acatacatcattaattgaatgaatctagaaaatggatttttgcttatattagt 21387585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 24936611 - 24936667
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    ||||||||||||||||| ||| |||||||||| |||||||||  |||||||||||||    
T  24936611 cacatacatcattaattgaatatatctaaaaagtgaatttttatttatattagtaac 24936667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 716301 - 716242
Alignment:
Q  20 tatgtcacatacatcattaattaaatgtatctaa-aaaatgaatttttgcttatattagt 78  Q
    ||||||| |||||||||||||| ||||||||||| ||||| ||||||| |||||||||||    
T  716301 tatgtcatatacatcattaattgaatgtatctaaaaaaataaatttttacttatattagt 716242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 27554569 - 27554628
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||| |||||||||||||||||| ||||||| | |||| | |||||||||||||||||||    
T  27554569 atatatcacatacatcattaattgaatgtattttaaaagtaaatttttgcttatattagt 27554628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 31417594 - 31417645
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||||| ||| |||| |||||||| |||||||||||||||||||    
T  31417594 tcacatacatcatttattgaatgaatctaaaacatgaatttttgcttatatt 31417645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 43506527 - 43506444
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagca-cccaaataacgtgttgcattgtggatggtcttat 172  Q
    ||||||||||||||| ||||||||||||| |||   |||| |||||||| |||||||   ||||||||||||||||| ||||||    
T  43506527 gtattaattataaaaagaatgatgtgtacagtcgagatccgtttaagcaccccaaatggagtgttgcattgtggatgatcttat 43506444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 45000669 - 45000614
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatat 74  Q
    |||||||||| |||||||||||| |||||||||| |||||  ||||||||||||||    
T  45000669 atatgtcacacacatcattaattgaatgtatctagaaaatagatttttgcttatat 45000614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 12171321 - 12171395
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtattaattat 100  Q
    |||||||||||| | |||||| |||||||||   ||||||| ||||||||||| || | ||||||||||||||||    
T  12171321 acatacatcatttaataaatgaatctaaaaatcaaatttttacttatattagtgaccggatggtgtattaattat 12171395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 22281522 - 22281580
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactga 84  Q
    |||| ||||||||||| ||||||| |||||| | ||||||||||||||||| |||||||    
T  22281522 acattcatcattaattcaatgtatttaaaaagtaaatttttgcttatattaataactga 22281580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 46944016 - 46944066
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||||||||||||| |||||||||||||| | ||||||| |||||||||    
T  46944016 acatacatcattaattgaatgtatctaaaaattaaatttttacttatatta 46944066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 7430958 - 7430993
Alignment:
Q  21 atgtcacatacatcattaattaaatgtatctaaaaa 56  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7430958 atgtcacatacatcattaattgaatgtatctaaaaa 7430993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 15051142 - 15051095
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||||||    
T  15051142 atacatcatttattgaatgtatctaaaacataaatttttgcttatatt 15051095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 22281511 - 22281452
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||| |||||||||||||| ||| |||||||||| |  ||||||| ||||||||||    
T  22281511 atatgtcatatacatcattaattgaatatatctaaaaattagatttttgtttatattagt 22281452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 26904859 - 26904926
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    ||||||||||||||| |||||| ||| ||||  | || |||||||||||||||| || ||||||||||    
T  26904859 cacatacatcattaaataaatgaatccaaaatgttaaattttgcttatattagtgaccgaatggtgta 26904926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 29498845 - 29498794
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||| ||| |||||||||  || ||||||||||||||||    
T  29498845 cacatacatcattaattgaatatatctaaaatgtggatttttgcttatatta 29498794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 45000679 - 45000746
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    |||||||||||| |||| ||||| |||||||| |  |||||||||||||||||| || ||| ||||||    
T  45000679 cacatacatcatcaattgaatgtgtctaaaaagtacatttttgcttatattagtgaccgaagggtgta 45000746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 24936747 - 24936694
Alignment:
Q  21 atgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||| |||||||||||| |||||| ||||||||||| || |||||||||||||    
T  24936747 atgtcatatacatcattaaataaatgaatctaaaaaatcaa-ttttgcttatatt 24936694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 34478316 - 34478366
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||| | |||||| ||||||||||| |||||||||||||| ||||    
T  34478316 atacatcatttagtaaatgaatctaaaaaattaatttttgcttataatagt 34478366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 5212118 - 5212077
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttt 65  Q
    |||||||||||||||| | |||| ||||||||||||||||||    
T  5212118 tcacatacatcattaaatgaatgaatctaaaaaatgaatttt 5212077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 44416593 - 44416544
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||| ||| |||| |||||||| ||||||||||| |||||||    
T  44416593 acatacatcattcattgaatgaatctaaaacatgaatttttgtttatatt 44416544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 15051159 - 15051211
Alignment:
Q  23 gtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||| ||| ||| |||| || ||||| |||||||||||||||||||    
T  15051159 gtcacatacattatttattgaatgaatttaaaacatgaatttttgcttatatt 15051211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 16777953 - 16777901
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| | |||||| ||||||||| | || ||||||||||||||||    
T  16777953 acatacatcatttaataaatgaatctaaaaattaaacttttgcttatattagt 16777901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 21387654 - 21387702
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    ||||||||||||| |||||||| ||||||||| | || |||||||||||    
T  21387654 cacatacatcatttattaaatgaatctaaaaagtaaaattttgcttata 21387702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 21886525 - 21886481
Alignment:
Q  29 tacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    ||||||||||||| |||| |||||||| || ||||||||||||||    
T  21886525 tacatcattaattgaatgaatctaaaatataaatttttgcttata 21886481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 61231 - 61172
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  61231 atatgtcacatacatcattaattgaatgtatctaaaaaagggatttttgcttatattagt 61172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 61240 - 61293
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||  || ||||||| ||||||||||    
T  61240 cacatacatcattaattgaatgtatctaaaatgtggatttttgtttatattagt 61293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 65997 - 66048
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||||||||||||| | |||| ||||||||||| || ||||||||||||||    
T  65997 tcacatacatcattaaatgaatgaatctaaaaaatcaa-ttttgcttatatta 66048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 21506531 - 21506472
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  21506531 atatgtcacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 21506472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 30397796 - 30397855
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  30397796 atatgtcacatacatcattaattgaatgtatctaaaaaagggatttttgcttatattagt 30397855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 28577654 - 28577610
Alignment:
Q  34 cattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28577654 cattaattaaatgtatctaaaaaatgaatttttgcttatattagt 28577610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 4844351 - 4844300
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  4844351 cacatacatcattaattgaatgtatctaaaaaatgattttttgcttatatta 4844300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 793098 - 793016
Alignment:
Q  89 tgtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtctta 171  Q
    |||||||||||||||||||||||  ||||| ||| | | |||||||||||| ||||| | ||| |||||||||||||||||||    
T  793098 tgtattaattataaaacgaatgacttgtacagtcgggacccatttaagcactcaaatgaggtgctgcattgtggatggtctta 793016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 21998102 - 21998048
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  21998102 tcacatacattattaattgaatgtatctaaaaaatgtatttttgcttatattagt 21998048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 21506540 - 21506592
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  21506540 tcacatacatcattaattgaatgtatctaaaaattaaatttttgcttatatta 21506592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 21998111 - 21998167
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  21998111 atatgtcacatacatcattaattgaatgtatctaaaaagtagatttttgcttatatt 21998167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 17773573 - 17773632
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||| |||||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  17773573 atatatcacatacatcattaattgaatgtatctaaaaagtagatttttgcttatattagt 17773632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 30460691 - 30460749
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactg 83  Q
    ||||||||||||||||| ||| |||||||||| | ||||||||||||||||||| ||||    
T  30460691 cacatacatcattaattgaatctatctaaaaagtaaatttttgcttatattagtgactg 30460749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 17268075 - 17268022
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||||| ||||||||  |||||| |||||||||||    
T  17268075 cacatacatcattaattaaatgtatttaaaaaatagatttttacttatattagt 17268022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 31536373 - 31536320
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||| |||||||||||||||| |  ||||||||||||||||||    
T  31536373 cacatacatcattaaataaatgtatctaaaaagttgatttttgcttatattagt 31536320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 17268085 - 17268144
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||| ||||||| |||||||||| ||| |||| |||| |||||||||||    
T  17268085 atatgtcacatacattattaattgaatgtatctagaaagtgaacttttacttatattagt 17268144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 3012439 - 3012505
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||||||||  | |||||| ||||||    
T  3012439 acatacatcatttattgaatgaatctaaaacatgaatttttgcttatatttatgactgaagggtgta 3012505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 4844359 - 4844401
Alignment:
Q  31 catcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  4844359 catcattaattgaatgtatctaaaaagtgaatttttgcttata 4844401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 30397787 - 30397717
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtatta 95  Q
    ||||||||||||||||| |||||||||||||  || ||||||| |||||||||| || | | |||||||||    
T  30397787 cacatacatcattaattgaatgtatctaaaatgtggatttttgtttatattagtgaccggagggtgtatta 30397717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 8363684 - 8363627
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||| ||||| |||||||||| ||||||||||||||||  ||||||| ||||||||    
T  8363684 atatgtgacatatatcattaattgaatgtatctaaaaaatatatttttgtttatatta 8363627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 17773563 - 17773510
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||| ||| |||||||||||||| || ||||||| ||||||||||    
T  17773563 cacatacatcatttattgaatgtatctaaaaagtggatttttgtttatattagt 17773510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 28577673 - 28577730
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||| |||||||||| ||||||| |||||||||||||| |  ||||||||||||||||    
T  28577673 atatatcacatacattattaattgaatgtatctaaaaagtatatttttgcttatatta 28577730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 31536389 - 31536450
Alignment:
Q  22 tgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactg 83  Q
    |||||||| ||| ||||||| ||||||| |||||| | ||||||||||||||||||| ||||    
T  31536389 tgtcacatgcataattaattgaatgtatttaaaaagtaaatttttgcttatattagtgactg 31536450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 30669137 - 30669097
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttt 65  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  30669137 cacatacatcattaattaaatgaatctaaaaaatcaatttt 30669097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 13276548 - 13276498
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||| ||| |||| | |||||| |||||||||||||||||||    
T  13276548 cacatacatcatttattgaatgaacctaaaacatgaatttttgcttatatt 13276498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 15836600 - 15836551
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||| ||| |||| ||||| || |||||||||||||||||||    
T  15836600 acatacatcatttattgaatgaatctacaatatgaatttttgcttatatt 15836551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 30460681 - 30460624
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||| |||||||||||||| ||| ||| |||||| ||| || ||||||||||||||||    
T  30460681 atatatcacatacatcattgattgaatatatctacaaagtggatttttgcttatatta 30460624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 15836615 - 15836667
Alignment:
Q  23 gtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||||||||| ||| |||| |||||||| ||| |||||| ||||||||    
T  15836615 gtcacatacatcatttattgaatgaatctaaaacatgtatttttacttatatt 15836667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 13689604 - 13689545
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  13689604 atatgtcacatacatcattaattgaatgtatctaaaaaatagatttttgcttatattagt 13689545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 29224010 - 29223948
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    |||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  29224010 atatgtcacatatatcattaattgaatatatctaaaaaatggatttttgcttatattagtaac 29223948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 24941173 - 24941120
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  24941173 cacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagt 24941120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 5418583 - 5418524
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||    
T  5418583 atatgtcacatacatcattaattgaatgtatctaaaaaattgatttttgctcatattagt 5418524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 3504137 - 3504071
Alignment:
Q  27 catacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||||| | || |||||||||    
T  3504137 catacatcattaattgaatgaatctaaaaaatgaatttttgtttatattagtgattggatggtgtat 3504071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 5281212 - 5281266
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  5281212 tcacatacatcattaattgaatgtatctaaaaagtgaatttttacttatattagt 5281266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 52817644 - 52817698
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  52817644 tcacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagt 52817698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 5418593 - 5418646
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||||||||    
T  5418593 cacatacatcattaattcaatgtatctaaaaagtaaatttttgcttatattagt 5418646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 6243706 - 6243771
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    |||||||||||||| |||||||||||| ||| ||||||| |||||||||||||  |||||||||||    
T  6243706 atacatcattaattgaatgtatctaaataataaattttttcttatattagtaatcgaatggtgtat 6243771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 44156083 - 44156131
Alignment:
Q  30 acatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  44156083 acatcattaattcaatgtatctaaaaagtgaatttttgcttatattagt 44156131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 10031565 - 10031504
Alignment:
Q  18 aatatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaa 80  Q
    |||||||||| ||||||||||||| |||||||||||||| | ||||||| |||||||||||||    
T  10031565 aatatgtcacgtacatcattaattgaatgtatctaaaaagtaaattttt-cttatattagtaa 10031504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 10031593 - 10031655
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    ||||||||||||||| ||||||||||| ||||||||||  | ||||||| |||||||||||||    
T  10031593 atatgtcacatacattattaattaaatatatctaaaaagcggatttttgtttatattagtaac 10031655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 13689615 - 13689667
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||| ||||||| |||| ||||||||| |||||||||||||||||||||    
T  13689615 acatacattattaattgaatgaatctaaaaagtgaatttttgcttatattagt 13689667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 20598316 - 20598252
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||| || || | ||||||||    
T  20598316 atacatcatttattgaatgtatctaaaacatgaatttttgcttatatttgtgaccggatggtgta 20598252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 29335976 - 29336056
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagca-cccaaataacgtgttgcattgtggatggtct 169  Q
    ||||||||||||||| ||||||||||||| ||| | | ||||||||||| |||||||   ||| |||||||||||||||||    
T  29335976 gtattaattataaaaagaatgatgtgtacagtcgggacccatttaagcaccccaaatggggtgctgcattgtggatggtct 29336056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 48101276 - 48101352
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatgg 166  Q
    |||||||||||||||||||||  |||||| ||| | |||||||||||||| |||||   ||| ||||||||||||||    
T  48101276 gtattaattataaaacgaatgccgtgtacagtcgggatccatttaagcactcaaatggggtgctgcattgtggatgg 48101352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 39837236 - 39837311
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatg 165  Q
    |||||||||||||||||||||| |||||| ||| | | |||||||||||| ||||||   |||||| |||||||||    
T  39837236 gtattaattataaaacgaatgacgtgtacagtcaggacccatttaagcactcaaataggatgttgcgttgtggatg 39837311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 52817635 - 52817580
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatat 74  Q
    |||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||    
T  52817635 atatgtcacatacatccttaaatgaatgtatcttaaaagtgaatttttgcttatat 52817580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 55087791 - 55087842
Alignment:
Q  27 catacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  55087791 catacatcattaattgaatgtatctaaaaattagatttttgcttatattagt 55087842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 6243693 - 6243643
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgct 69  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||||||    
T  6243693 atatatcacatatattattaattaaatgtatctaaaaaataaatttttgct 6243643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 33604537 - 33604618
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtctta 171  Q
    ||||||||||||||||||||||  ||||| ||| | | |  |||||||||||||||   ||| |||||||||||||||||||    
T  33604537 gtattaattataaaacgaatgacttgtacagtcgggacctgtttaagcacccaaatggagtgctgcattgtggatggtctta 33604618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 54106536 - 54106487
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||||||||    
T  54106536 acatacatcatttattgaatgaatctaaaatatgaatttttgcttatatt 54106487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 5535775 - 5535723
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| ||| |||| ||||||||||||| |||||||||||| ||||    
T  5535775 acatacatcatttattgaatgaatctaaaaaatgagtttttgcttatactagt 5535723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 29006898 - 29006830
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgta 92  Q
    |||||||||||||| ||| |||| |||||||||||  ||||||||||||| |||| || | ||||||||    
T  29006898 tcacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgaccggatggtgta 29006830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 24941183 - 24941238
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatat 74  Q
    |||| ||| |||||||||||||| |||||||||||||  |||||||||||| ||||    
T  24941183 atatatcaaatacatcattaattgaatgtatctaaaaggtgaatttttgctcatat 24941238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 29644955 - 29645034
Alignment:
Q  90 gtattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtct 169  Q
    ||||||| |||||||||||||| || ||| ||| | | |||||||||||||||||| | ||| |||||  ||||||||||    
T  29644955 gtattaactataaaacgaatgacgtatacagtcgggacccatttaagcacccaaatgaagtgctgcataatggatggtct 29645034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 54106552 - 54106603
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||||| ||| |||| |||||||| || ||||||||||||||||    
T  54106552 tcacatacatcatttattgaatgaatctaaaacataaatttttgcttatatt 54106603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 12596738 - 12596688
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    ||||||||| ||| |||||||| || |||||||| ||||||||||||||||    
T  12596738 cacatacattatttattaaatgaatttaaaaaataaatttttgcttatatt 12596688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 41346523 - 41346461
Alignment:
Q  31 catcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtat 93  Q
    ||||||||| |||||| |||||||| || ||||||| |||||| |||| || |||||||||||    
T  41346523 catcattaaataaatgaatctaaaatataaatttttacttataatagtgaccgaatggtgtat 41346461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 46779372 - 46779421
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  46779372 cacatacatcattaattaaatgaatctaaaaaat-aaaatttgcttatatt 46779421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 2440972 - 2440919
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||| |||||| | |||||| || | |||||||||||||||||    
T  2440972 cacatacatcattaaataaatgaacctaaaatataattttttgcttatattagt 2440919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 7740567 - 7740616
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    |||||||||||||||||| |||| || ||||| || ||||||||||||||    
T  7740567 tcacatacatcattaatttaatgaatttaaaatataaatttttgcttata 7740616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 19934716 - 19934769
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||| ||| |||| |||||||||||  ||||||||||||| ||||    
T  19934716 cacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagt 19934769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 21142171 - 21142216
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    ||||||||||||||||||| |||||||| || || |||||||||||    
T  21142171 atacatcattaattaaatgaatctaaaatataaacttttgcttata 21142216  T

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Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 29224012 - 29224049
Alignment:
Q  28 atacatcattaattaaatgtatctaaaaaatgaatttt 65  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  29224012 atacatcattaattcaatgtatctaaaaagtgaatttt 29224049  T

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Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 54164891 - 54164944
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||| ||| |||| |||||||||||  ||||||||||||| ||||    
T  54164891 cacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagt 54164944  T

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Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 54508230 - 54508181
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||||||| ||| |||| |||||||| || ||||||||||||||||    
T  54508230 acatacatcatttattgaatgaatctaaaatataaatttttgcttatatt 54508181  T

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Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 54922327 - 54922278
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatt 75  Q
    |||||||| ||| ||| ||||||||||||| |||||||||| ||||||||    
T  54922327 acatacattatttattgaatgtatctaaaatatgaattttttcttatatt 54922278  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 4406319 - 4406367
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    ||||||||||||||||| |||| ||| |||| || ||||||||||||||    
T  4406319 cacatacatcattaattgaatgaatccaaaatataaatttttgcttata 4406367  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 11796663 - 11796715
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| ||| |||  ||||||||| |||||||||||||||| ||||    
T  11796663 acatacatcatttattgaataaatctaaaaagtgaatttttgcttataatagt 11796715  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 16696568 - 16696488
Alignment:
Q  91 tattaattataaaacgaatgatgtgtacggtctgaatccatttaagcacccaaataacgtgttgcattgtggatggtctta 171  Q
    |||||||| ||||||||||||  ||||| ||| | ||||||||||| ||||||||   |||  |||||||| |||||||||    
T  16696568 tattaattgtaaaacgaatgacatgtacagtcaggatccatttaagtacccaaatggggtgcggcattgtgaatggtctta 16696488  T

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Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 26636519 - 26636571
Alignment:
Q  26 acatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||| ||| |||| ||||||||||| ||||||| |||||| ||||    
T  26636519 acatacatcatttattgaatgaatctaaaaaataaatttttacttataatagt 26636571  T

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Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 35005133 - 35005181
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttata 73  Q
    ||||||||| ||| ||| |||| ||||||||| ||||||||||||||||    
T  35005133 cacatacattatttattgaatgaatctaaaaattgaatttttgcttata 35005181  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 120207 - 120137
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaactgaatggtgtatta 95  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||||||||| || | | |||||||||    
T  120207 cacatacatcattaattgaatgtatctaaaaagtgaaattttgcttatattagtgaccggagggtgtatta 120137  T

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Target: scaffold0024; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 120222 - 120276
Alignment:
Q  24 tcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||| |||||||||||||| | |||||||||||||||||||    
T  120222 tcacatacatcattaattgaatgtatctaaaaagtaaatttttgcttatattagt 120276  T

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Target: scaffold0039 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 54466 - 54519
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  54466 cacatacatcattaattgaatgtatctaaagagtgaatttttgcttatattagt 54519  T

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Target: scaffold0039; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 54456 - 54394
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagtaac 81  Q
    |||| ||| |||||||||||||| |||||||||||||| |  |||||||||||||||||||||    
T  54456 atatatcatatacatcattaattgaatgtatctaaaaagtagatttttgcttatattagtaac 54394  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 246857 - 246804
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||||||||    
T  246857 cacatacatcattaattgaatgtatctaaaaagtaaatttttgcttatattagt 246804  T

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Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 246867 - 246924
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatatta 76  Q
    |||||||| |||||||||||||| |||||||||||||| |  ||||||||||||||||    
T  246867 atatgtcagatacatcattaattgaatgtatctaaaaagtagatttttgcttatatta 246924  T

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Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4022 - 4081
Alignment:
Q  19 atatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||| |||| ||| |||||||||||||| | |||||||||||||||||||    
T  4022 atatgtcacatacaacatttattgaatgtatctaaaaagtaaatttttgcttatattagt 4081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 4012 - 3959
Alignment:
Q  25 cacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    ||||||||||||||| | ||||||| |||||| || ||||||||||||||||||    
T  4012 cacatacatcattaaattaatgtatttaaaaagtgtatttttgcttatattagt 3959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 17231 - 17176
Alignment:
Q  22 tgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgcttatattagt 78  Q
    |||||||||||||||||||| ||| ||| |||||| |||| ||||||||||||||||    
T  17231 tgtcacatacatcattaattgaatatatataaaaagtgaa-ttttgcttatattagt 17176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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