View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_high_10 (Length: 481)
Name: NF11109_high_10
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 427920 - 428167
Alignment:
| Q |
6 |
agataacacacaatataagtttttcnnnnnnnnctcaccaattgaaatggaatttttggatctggcagagctacagnnnnnnnnn------taacacatt |
99 |
Q |
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| T |
427920 |
agataacacacaatataagtttttcaaaaaaaactcaccaattgaaatggaatttttgcatctggcagagctacagaaaagaaaaaaaaaataacacatt |
428019 |
T |
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| Q |
100 |
taatttcgtctttaaatgatttacgagtttgaagtttgggatcaaatacttacgtatgacacaagtcattggtaaaatattgaatgtcatcagcagtaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
428020 |
taatttcgtctttaaatgatttacgagtttgaagtttgggatcaaatacttacgtatgacacaagtcattggtaaaatattgaatgtcatcagcagtaaa |
428119 |
T |
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| Q |
200 |
atcattgagttgatgtccgaaatttcttctgagtggcctgagcaagta |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
428120 |
atcattgagttgatgtccgaaatttcttctgagtggcctgagcaagta |
428167 |
T |
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