View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_high_19 (Length: 353)

Name: NF11109_high_19
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_high_19
NF11109_high_19
[»] chr4 (6 HSPs)
chr4 (9-337)||(25568581-25568916)
chr4 (238-338)||(4135099-4135198)
chr4 (230-319)||(4322411-4322499)
chr4 (230-338)||(4125749-4125856)
chr4 (279-338)||(4334138-4334197)
chr4 (28-98)||(4319534-4319604)
[»] chr6 (24 HSPs)
chr6 (230-336)||(5691420-5691525)
chr6 (230-338)||(5148268-5148375)
chr6 (238-338)||(5395629-5395728)
chr6 (230-336)||(5104181-5104286)
chr6 (230-336)||(5369048-5369153)
chr6 (230-338)||(5094627-5094734)
chr6 (233-338)||(5075043-5075147)
chr6 (230-331)||(5261455-5261555)
chr6 (230-331)||(5285454-5285554)
chr6 (230-338)||(5424339-5424446)
chr6 (30-132)||(5353097-5353199)
chr6 (230-338)||(5158810-5158917)
chr6 (238-338)||(5355933-5356032)
chr6 (279-338)||(5342280-5342339)
chr6 (230-338)||(5348961-5349070)
chr6 (267-326)||(5445675-5445734)
chr6 (230-326)||(5068383-5068478)
chr6 (238-338)||(5183269-5183368)
chr6 (28-98)||(5101050-5101120)
chr6 (28-98)||(5136151-5136221)
chr6 (233-338)||(5277279-5277383)
chr6 (31-80)||(5351411-5351460)
chr6 (28-80)||(2938920-2938972)
chr6 (28-80)||(5156245-5156297)
[»] chr7 (1 HSPs)
chr7 (230-330)||(36215201-36215300)
[»] chr2 (1 HSPs)
chr2 (230-331)||(22585630-22585730)
[»] chr5 (1 HSPs)
chr5 (235-338)||(8876389-8876491)
[»] chr3 (4 HSPs)
chr3 (28-132)||(47985625-47985729)
chr3 (28-132)||(47994912-47995016)
chr3 (28-132)||(48004199-48004303)
chr3 (28-132)||(48013484-48013588)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 25568916 - 25568581
Alignment:
Q  9 agcataggtccaagaatcaacaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattattgaagaaccttcactgtagaag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  25568916 agcataggtccaagaatcaacaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattactgaagaaccttcactgtacaag 25568817  T
Q  109 gtcaaccaatttggataattatcatggcgtaggaaagcaccataatggccatcgttattcataatctgtaattgtgaaaacaggctcaatttttatttaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25568816 gtcaaccaatttggataattatcatggcgtaggaaagcaccataatggccatcgttattcataatctgtaattgtgaaaacagactcaatttttatttaa 25568717  T
Q  209 cattataataata-------ataatcattctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggac 301  Q
    || ||||||||||        | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25568716 caatataataatataattttttcatcattctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaggcttcgctcaacaaggac 25568617  T
Q  302 atttattccaatttctgcataaagttcacaaccatt 337  Q
     |||||||||||||||||||||||||||||||||||    
T  25568616 gtttattccaatttctgcataaagttcacaaccatt 25568581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 4135099 - 4135198
Alignment:
Q  238 caaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttcacaaccatt 337  Q
    ||||||||||||||||||  ||||   || |||||||||| |||| ||||||||||||||||||| ||||||| ||||| ||| ||||  ||||||||||    
T  4135099 caaatcatgcattccaagcttgtttttat-catcaatagttacaaggcttcgctcaacaaggacacttattccgatttcagcaaaaagaccacaaccatt 4135197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 4322411 - 4322499
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgc 319  Q
    ||||||| |||||||||||| |||||  |||||  || ||||||  || |||| ||||| ||||||||||||| ||||||||||||||||    
T  4322411 tctcgcagcaaatcatgcatgccaagcttgttcttat-catcaaccgttacaaggcttctctcaacaaggacacttattccaatttctgc 4322499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 4125749 - 4125856
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    ||||||| |||||||||||| |||||  |||||  || ||||||  || |||| |||||| |||||||||||| ||||||||||||| ||  ||||| ||    
T  4125749 tctcgcagcaaatcatgcatgccaagcttgttcttat-catcaactgttacaaggcttcgttcaacaaggacacttattccaatttcagcgaaaagtcca 4125847  T
Q  330 caaccattt 338  Q
    || ||||||    
T  4125848 cagccattt 4125856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 4334197 - 4334138
Alignment:
Q  279 acaaagcttcgctcaacaaggacatttattccaatttctgcataaagttcacaaccattt 338  Q
    |||| ||||||||||||||||||| ||||||||||||| ||  ||||| |||| ||||||    
T  4334197 acaaggcttcgctcaacaaggacacttattccaatttcagcgaaaagtccacagccattt 4334138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 4319534 - 4319604
Alignment:
Q  28 acaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattattgaagaaccttc 98  Q
    |||||||| || ||||| ||||||  ||| ||||||||| |||| |||||||||||||  |||||||||||    
T  4319534 acaatgcacattattgtcttcaagctacgtccttccacttgagggacttcaaaaattacagaagaaccttc 4319604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 5691420 - 5691525
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    |||||||||||||||||||||| ||| ||||||| || |||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||| |||    
T  5691420 tctcgcaacaaatcatgcattctaagcctgttcctat-catcaacagtcacaaggcttcgctccacaaggacatttattccaattcctgcataaagatca 5691518  T
Q  330 caaccat 336  Q
    |||||||    
T  5691519 caaccat 5691525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 5148268 - 5148375
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    |||||||||||||||||||||||||| |  |||  || |||||| |||||||| ||||||||| |  |||||||||||||||||||||||||||||||||    
T  5148268 tctcgcaacaaatcatgcattccaagccgattcatat-catcaacagtcacaaggcttcgctccagtaggacatttattccaatttctgcataaagttca 5148366  T
Q  330 caaccattt 338  Q
    || ||||||    
T  5148367 cagccattt 5148375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 5395728 - 5395629
Alignment:
Q  238 caaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttcacaaccatt 337  Q
    ||||||||||||| |||||||||||| || |||||| ||| |||| ||||||||||||||||||| ||| ||||||||||||| ||||||| | ||||||    
T  5395728 caaatcatgcattgcaagtctgttcctat-catcaacagttacaaggcttcgctcaacaaggacacttactccaatttctgcaaaaagttcgctaccatt 5395630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 5104181 - 5104286
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    ||||||||||||||||||||||||||| |||||  || |||||| ||| | ||  |||||||||||||||| | ||||||||||||||||| ||||| ||    
T  5104181 tctcgcaacaaatcatgcattccaagtttgttcttat-catcaacagttataagacttcgctcaacaaggatacttattccaatttctgcaaaaagtcca 5104279  T
Q  330 caaccat 336  Q
    || ||||    
T  5104280 catccat 5104286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 230 - 336
Target Start/End: Complemental strand, 5369153 - 5369048
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    ||||||||||||||||||||||||||| |||||  || |||||| ||| ||||  |||||||||||||||| | ||||||||||||| ||| ||||| ||    
T  5369153 tctcgcaacaaatcatgcattccaagtttgttcttat-catcaacagtgacaagacttcgctcaacaaggatacttattccaatttcagcaaaaagtcca 5369055  T
Q  330 caaccat 336  Q
    || ||||    
T  5369054 catccat 5369048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 5094734 - 5094627
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    ||||||||||||||||||||||||||| |||||  | ||||||| ||| ||||  || ||||||||||||| | ||||||||||||| ||| ||||| ||    
T  5094734 tctcgcaacaaatcatgcattccaagtttgttctta-tcatcaacagttacaagactacgctcaacaaggatacttattccaatttcagcaaaaagtcca 5094636  T
Q  330 caaccattt 338  Q
    || ||||||    
T  5094635 catccattt 5094627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 5075043 - 5075147
Alignment:
Q  233 cgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttcacaa 332  Q
    |||| ||||||||||||||||||  |||||| || |||| | ||| |||| ||||||||||||||| ||| ||| ||||||||| ||| ||||||||||     
T  5075043 cgcagcaaatcatgcattccaagcttgttcctat-catcgacagttacaaggcttcgctcaacaagtacacttactccaatttcagcaaaaagttcacat 5075141  T
Q  333 ccattt 338  Q
    ||||||    
T  5075142 ccattt 5075147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 331
Target Start/End: Original strand, 5261455 - 5261555
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    |||||||||||| |||||||||||||  |||||  || |||||| | |||||| ||||| ||||||||||||  |||||||||||||||||| |||| ||    
T  5261455 tctcgcaacaaaccatgcattccaagcatgttcttat-catcaacactcacaaggcttctctcaacaaggacgcttattccaatttctgcatgaagtcca 5261553  T
Q  330 ca 331  Q
    ||    
T  5261554 ca 5261555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 331
Target Start/End: Original strand, 5285454 - 5285554
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    ||||||| |||| |||||||||||||  |||||  || |||||| | |||||| ||||| ||||||||||||  ||||||||||||||||||||||| ||    
T  5285454 tctcgcagcaaaccatgcattccaagcatgttcttat-catcaacactcacaaggcttctctcaacaaggacgcttattccaatttctgcataaagtcca 5285552  T
Q  330 ca 331  Q
    ||    
T  5285553 ca 5285554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 5424446 - 5424339
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    ||||||||||||||||||||||||||| ||||   || |||||| ||| ||||  || ||||||||||||| | ||||||||||||| ||| ||||| ||    
T  5424446 tctcgcaacaaatcatgcattccaagtttgttattat-catcaacagtgacaagactccgctcaacaaggatacttattccaatttcagcaaaaagtcca 5424348  T
Q  330 caaccattt 338  Q
    || ||||||    
T  5424347 catccattt 5424339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 5353097 - 5353199
Alignment:
Q  30 aatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattattgaagaaccttcactgtagaaggtcaaccaatttggataatta 129  Q
    |||||| |||||||| ||||||  ||||||||||||  |||| || | |||| |||  ||||||||||||  ||||||||| ||||||||||||||| ||    
T  5353097 aatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataacta 5353196  T
Q  130 tca 132  Q
    |||    
T  5353197 tca 5353199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 5158810 - 5158917
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    ||||||||||||||||||||||||||| |||||  |  |||||| ||| ||||  || |||||||||||||   |||||||||||||  || ||||||||    
T  5158810 tctcgcaacaaatcatgcattccaagtttgttctta-ccatcaacagtaacaagactacgctcaacaaggatgcttattccaatttcaccaaaaagttca 5158908  T
Q  330 caaccattt 338  Q
    || ||||||    
T  5158909 catccattt 5158917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 5355933 - 5356032
Alignment:
Q  238 caaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttcacaaccatt 337  Q
    |||||||||||||| ||| || |||  || |||||| ||| |||| ||||||||||||||| | | ||||||||||||| ||||||||| |||| |||||    
T  5355933 caaatcatgcattctaagcctattcttat-catcaacagttacaaggcttcgctcaacaagaatacttattccaatttcagcataaagtccacatccatt 5356031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 5342339 - 5342280
Alignment:
Q  279 acaaagcttcgctcaacaaggacatttattccaatttctgcataaagttcacaaccattt 338  Q
    |||| ||||||||||||||| ||| ||||||||||||||||| ||||| |||| ||||||    
T  5342339 acaaggcttcgctcaacaagaacacttattccaatttctgcaaaaagtccacagccattt 5342280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 5349070 - 5348961
Alignment:
Q  230 tctcgcaacaaatcat--gcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagtt 327  Q
    ||||||||||||||||  ||||||||||| |||||  || |||||| ||| ||||  ||||| ||||||| || | ||||||||||||| ||| ||||||    
T  5349070 tctcgcaacaaatcatatgcattccaagtttgttcttat-catcaacagtgacaagacttcgatcaacaaagatacttattccaatttcagcaaaaagtt 5348972  T
Q  328 cacaaccattt 338  Q
    |||| ||||||    
T  5348971 cacatccattt 5348961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 5445734 - 5445675
Alignment:
Q  267 tcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagt 326  Q
    ||||||| |||||||| ||||||  ||||||||||| ||||||||||||||||| |||||    
T  5445734 tcatcaacagtcacaaggcttcgagcaacaaggacacttattccaatttctgcagaaagt 5445675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 5068383 - 5068478
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagt 326  Q
    ||||||||||||||||||||||||||| |||| |  || ||||| | | || |  |||||||||||||||| | ||||||||||||| ||| |||||    
T  5068383 tctcgcaacaaatcatgcattccaagtttgtt-ctttttatcaacaataaccagacttcgctcaacaaggatacttattccaatttcagcaaaaagt 5068478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 5183269 - 5183368
Alignment:
Q  238 caaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttcacaaccatt 337  Q
    |||||||||||||   ||| |||||| || |||||| ||| |||| ||||| ||||||||||||| ||| ||||||||||||| ||| ||| | ||||||    
T  5183269 caaatcatgcatttgcagtttgttcctat-catcaacagttacaaggcttctctcaacaaggacacttactccaatttctgcaaaaaattcgctaccatt 5183367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 5101050 - 5101120
Alignment:
Q  28 acaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattattgaagaaccttc 98  Q
    |||||||| |||||||| ||||||  ||||||||||||| |||| ||||| ||| |||  |||||||||||    
T  5101050 acaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttc 5101120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 5136151 - 5136221
Alignment:
Q  28 acaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattattgaagaaccttc 98  Q
    |||||||| |||||||| ||||||  ||||||||||||| |||| ||||| ||| |||  |||||||||||    
T  5136151 acaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttc 5136221  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 338
Target Start/End: Complemental strand, 5277383 - 5277279
Alignment:
Q  233 cgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttcacaa 332  Q
    |||||||||| ||||||||||||  ||||   ||| |||||  || || ||||||||||||||||||||| ||||||||  ||||||| ||| | ||||     
T  5277383 cgcaacaaattatgcattccaagcttgtttttatt-atcaaccgttactaagcttcgctcaacaaggacacttattccatcttctgcaaaaaatccacag 5277285  T
Q  333 ccattt 338  Q
    ||||||    
T  5277284 ccattt 5277279  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 5351460 - 5351411
Alignment:
Q  31 atgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaa 80  Q
    ||||| |||||||| |||||| |||||||||||||| |||| ||||||||    
T  5351460 atgcacatcattgtcttcaagtcacgcccttccacttgaggaacttcaaa 5351411  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 2938972 - 2938920
Alignment:
Q  28 acaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaa 80  Q
    |||||||| |||||||| ||||||  ||||||||||||| |||| ||||||||    
T  2938972 acaatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaa 2938920  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 5156245 - 5156297
Alignment:
Q  28 acaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaa 80  Q
    |||||||| |||||||| ||||||  ||||||||||||| |||| ||||||||    
T  5156245 acaatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaa 5156297  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 330
Target Start/End: Original strand, 36215201 - 36215300
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    ||||||| |||||||||||||||||| ||||||| || |||||| ||| |||| ||||||||| ||||| ||| ||| ||||||||||||| ||||||||    
T  36215201 tctcgcagcaaatcatgcattccaagcctgttcctat-catcaacagttacaaggcttcgctctacaagaacacttactccaatttctgcaaaaagttca 36215299  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 331
Target Start/End: Original strand, 22585630 - 22585730
Alignment:
Q  230 tctcgcaacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttca 329  Q
    ||||||| |||||||||||||||||| ||||||  || |||||| | |||||| ||||| ||||||||||||  |||||||||||||||||| |||| ||    
T  22585630 tctcgcagcaaatcatgcattccaagcctgttcttat-catcaacactcacaaggcttctctcaacaaggacgcttattccaatttctgcatgaagtcca 22585728  T
Q  330 ca 331  Q
    ||    
T  22585729 ca 22585730  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 8876491 - 8876389
Alignment:
Q  235 caacaaatcatgcattccaagtctgttccaattcatcaatagtcacaaagcttcgctcaacaaggacatttattccaatttctgcataaagttcacaacc 334  Q
    |||||||||||||||||||||  | ||||  |||||| || || |||| |||||| |||||||| ||| ||||||||||||| | |||||||||||| ||    
T  8876491 caacaaatcatgcattccaagcatattcct-ttcatccatggttacaaggcttcgttcaacaagaacacttattccaatttcaggataaagttcacaccc 8876393  T
Q  335 attt 338  Q
    ||||    
T  8876392 attt 8876389  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 47985625 - 47985729
Alignment:
Q  28 acaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattattgaagaaccttcactgtagaaggtcaaccaatttggataat 127  Q
    |||||||| |||||||| || |||  | ||| ||||||| |||| ||||||||| |||  ||||||||||||   |  ||||| |||||||||||||||     
T  47985625 acaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggataac 47985724  T
Q  128 tatca 132  Q
    |||||    
T  47985725 tatca 47985729  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 47994912 - 47995016
Alignment:
Q  28 acaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattattgaagaaccttcactgtagaaggtcaaccaatttggataat 127  Q
    |||||||| |||||||| || |||  | ||| ||||||| |||| ||||||||| |||  ||||||||||||   |  ||||| |||||||||||||||     
T  47994912 acaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggataac 47995011  T
Q  128 tatca 132  Q
    |||||    
T  47995012 tatca 47995016  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 48004199 - 48004303
Alignment:
Q  28 acaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattattgaagaaccttcactgtagaaggtcaaccaatttggataat 127  Q
    |||||||| |||||||| || |||  | ||| ||||||| |||| ||||||||| |||  ||||||||||||   |  ||||| |||||||||||||||     
T  48004199 acaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggataac 48004298  T
Q  128 tatca 132  Q
    |||||    
T  48004299 tatca 48004303  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 48013484 - 48013588
Alignment:
Q  28 acaatgcaaatcattgttttcaagacacgcccttccactcgaggtacttcaaaaattattgaagaaccttcactgtagaaggtcaaccaatttggataat 127  Q
    |||||||| |||||||| || |||  | ||| ||||||| |||| ||||||||| |||  ||||||||||||   |  ||||| |||||||||||||||     
T  48013484 acaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggataac 48013583  T
Q  128 tatca 132  Q
    |||||    
T  48013584 tatca 48013588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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