View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_high_21 (Length: 294)

Name: NF11109_high_21
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_high_21
NF11109_high_21
[»] chr5 (17 HSPs)
chr5 (19-286)||(30337164-30337431)
chr5 (19-286)||(30750846-30751113)
chr5 (19-286)||(30061572-30061839)
chr5 (19-286)||(30712067-30712334)
chr5 (19-286)||(30484601-30484868)
chr5 (19-286)||(30675927-30676194)
chr5 (53-283)||(29854545-29854775)
chr5 (53-283)||(29873408-29873638)
chr5 (19-259)||(30437013-30437238)
chr5 (59-263)||(30207762-30207966)
chr5 (63-286)||(30401321-30401544)
chr5 (58-286)||(30241032-30241245)
chr5 (84-238)||(17417355-17417509)
chr5 (63-263)||(30329503-30329700)
chr5 (59-263)||(30476615-30476819)
chr5 (59-149)||(30520401-30520491)
chr5 (59-149)||(30560741-30560831)
[»] chr4 (2 HSPs)
chr4 (19-286)||(20295221-20295488)
chr4 (59-238)||(52353201-52353380)
[»] chr3 (1 HSPs)
chr3 (59-282)||(25292590-25292813)
[»] chr7 (1 HSPs)
chr7 (28-260)||(26708541-26708758)
[»] chr1 (2 HSPs)
chr1 (196-238)||(7580415-7580457)
chr1 (198-238)||(7100785-7100825)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 30337431 - 30337164
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  30337431 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttacgttcagcaatattatctaacctccttgtaatctctttcaacctgtt 30337332  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30337331 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagc 30337232  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337231 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30337164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 30750846 - 30751113
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750846 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 30750945  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30750946 accaatctcatggcgaaacatgatgttctttggtttgaaagaggtacatcctctcagtcgacaagacttaatcgagtactcatcaaggatatcatcgagc 30751045  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30751046 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30751113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 30061572 - 30061839
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| |||||||||||||||| |||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30061572 gatctgggatttccctaagagtgccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgtt 30061671  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061672 accaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 30061771  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061772 acataaacaccatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30061839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 30712334 - 30712067
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30712334 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgtt 30712235  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  30712234 accaatctcatggcgaaacatgatgttctttagtttgaaagaggtaaatcctctcagtcgaaaagactcgatcgagtactcatcaaggatatcatcgagc 30712135  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30712134 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30712067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 30484601 - 30484868
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||| ||||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  30484601 gatctgggattaccctaagagtttcacccgtctgtagagaaaacttgttctttctttcagcaatatcatctaacctccttgtaatctctttcaacctgtt 30484700  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  30484701 accaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctgagtcgacaagactcgatcgagtactcatcaaggatatcatcgagc 30484800  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30484801 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30484868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 30676194 - 30675927
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30676194 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 30676095  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
     |||||||||  ||||||| |||||||||||||||||| |||||   ||||||| ||| ||| ||||||||| || ||||||||||||||||||||||||    
T  30676094 gccgatctcactgcgaaacatgatgttctttggtttgagagaggatgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagc 30675995  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30675994 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30675927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 53 - 283
Target Start/End: Original strand, 29854545 - 29854775
Alignment:
Q  53 tagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggt 152  Q
    |||| |||||||||||||||| |||||||||||||| ||  |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  29854545 tagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttggt 29854644  T
Q  153 ttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccata 252  Q
    ||||||||||| |||||||| ||| ||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  29854645 ttgaaagaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccata 29854744  T
Q  253 gcttaatagagagttctttgaattgtttctt 283  Q
     |||||||||| | ||| ||| |||||||||    
T  29854745 ccttaatagagtggtctgtgacttgtttctt 29854775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 283
Target Start/End: Original strand, 29873408 - 29873638
Alignment:
Q  53 tagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggt 152  Q
    |||| |||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||||||||| |||||||| ||||||| ||||||    
T  29873408 tagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttggt 29873507  T
Q  153 ttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccata 252  Q
    || |||||| |  ||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||    
T  29873508 ttaaaagagattgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccata 29873607  T
Q  253 gcttaatagagagttctttgaattgtttctt 283  Q
     |||||||||| | ||| ||| |||||||||    
T  29873608 ccttaatagagcggtctgtgacttgtttctt 29873638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 30437013 - 30437238
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| || |||||||||||||| |||| || |  ||||||||||||||||||| ||||||||||  ||| ||||||| |||||||||||| ||||||||    
T  30437013 gatctgggctttccctaagagttacacccgtatggagagaaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgtt 30437112  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    |||||||| |||||||||||| |               |||| || |||  ||||||||||| ||||||||||||  ||||||||||||| |||||||||    
T  30437113 accgatcttatggcgaaacttta---------------aagatgtgaattttctcagtcgactagacttgatcgaacactcatcaaggatgtcatcgagc 30437197  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaat 259  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  30437198 acataaacagcatctttgaggtcttgtagccataccttaat 30437238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 59 - 263
Target Start/End: Original strand, 30207762 - 30207966
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 158  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| || || || || |||||| | | |||  ||||||||||||||||||||    
T  30207762 aaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaatctcacgacaaaaaatgatgttctttggtttgaaa 30207861  T
Q  159 gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa 258  Q
    || |   |  |  | ||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||| |    
T  30207862 gatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttta 30207961  T
Q  259 tagag 263  Q
    |||||    
T  30207962 tagag 30207966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 63 - 286
Target Start/End: Original strand, 30401321 - 30401544
Alignment:
Q  63 ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 162  Q
    ||||||||| | |||||||||||||| || || |||||||||||||| |||||||| ||||||| | ||||||||  |||||||||||| |||||||||     
T  30401321 ttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttctttgggttgaaagaga 30401420  T
Q  163 taaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga 262  Q
       | ||||  ||||||  ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||| |    
T  30401421 atgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaatata 30401520  T
Q  263 gagttctttgaattgtttcttctc 286  Q
    |   ||||||| |||| |||||||    
T  30401521 gctgtctttgacttgtctcttctc 30401544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 58 - 286
Target Start/End: Complemental strand, 30241245 - 30241032
Alignment:
Q  58 aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa 157  Q
    ||||||| ||| | || |||||||||||||| |||||||   |||||||||  |||||||||||||||||||||||||||||||                    
T  30241245 aaaacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgttaccgatctcatggcgaaacttgag--------------- 30241161  T
Q  158 agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta 257  Q
    |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| ||||    
T  30241160 agaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccatacctta 30241061  T
Q  258 atagagagttctttgaattgtttcttctc 286  Q
    ||||||   ||| ||| ||||||||||||    
T  30241060 atagagcagtctgtgacttgtttcttctc 30241032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 17417509 - 17417355
Alignment:
Q  84 tcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaag 183  Q
    ||||| || ||||||||||||||||  ||||| |  ||||||||| |||||||  |||||||||||||||||||| |||   | ||||| || |||| ||    
T  17417509 tcatcaaatctccttgtaatctcttccaacctttggccgatctcacggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccag 17417410  T
Q  184 acttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgag 238  Q
    ||| ||| ||| |||||||||| |||||||| |||||||||||| ||||||||||    
T  17417409 actcgattgagcactcatcaagaatatcatctagcacataaacaacatctttgag 17417355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 263
Target Start/End: Complemental strand, 30329700 - 30329503
Alignment:
Q  63 ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 162  Q
    ||||||||| |||||||||| | |||||| || || ||||| ||||| ||||| ||   |||||||||||||||    ||||||||||||||||||||||    
T  30329700 ttgttcttattttcagcaatcttatctaatcttctggtaatttctttcaacctatt---gatctcatggcgaaatacaatgttctttggtttgaaagagg 30329604  T
Q  163 taaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga 262  Q
       | ||||| | ||||| ||||| |||| || ||||||||||||||||||| |||||||| | | |||||||||  | ||| | ||||| |||||||||    
T  30329603 atgagcctctaattcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaataga 30329504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 263
Target Start/End: Original strand, 30476615 - 30476819
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 158  Q
    ||||||||  |||||||||||||| | ||| || ||||||||||| ||||| ||||| || ||||| ||| ||||||||   ||||||||| | ||||||    
T  30476615 aaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaatgttctttaggttgaaa 30476714  T
Q  159 gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa 258  Q
     |||   |  || | |||| || ||| |  || ||  | |||||||| |||||||| |||||||| |||||||||||||| | ||| | ||||| |||||    
T  30476715 caggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccataccttaa 30476814  T
Q  259 tagag 263  Q
    |||||    
T  30476815 tagag 30476819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 30520491 - 30520401
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttcttt 149  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||  | || || | |||||||||| |||| ||||||    
T  30520491 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt 30520401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 30560831 - 30560741
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttcttt 149  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||  | || || | |||||||||| |||| ||||||    
T  30560831 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt 30560741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 20295488 - 20295221
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  20295488 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttaaacctgct 20295389  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    |||||||||||||||||||  ||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  20295388 accgatctcatggcgaaacgcgatgttcattggtttgaaagagttaaatcctctcagtcgaccagactcgatcgagtactcatcaaggatatcaccgagc 20295289  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20295288 acataaacagcatctttgaggtcttgtaaccattgcttaatagagagttctttgaattgtttcttctc 20295221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 52353201 - 52353380
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 158  Q
    |||||||||||| ||||||||||  | ||| || ||||||||||| ||||| || ||||| || || ||||| ||||||   || || |||||||||||     
T  52353201 aaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatcatgacgaaacacaatattttttggtttgaat 52353300  T
Q  159 gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgag 238  Q
    || |  || ||  | ||||||| ||| ||||||||  | |||||||||||||||||||| || |||||||||||||||||    
T  52353301 gacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgag 52353380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 59 - 282
Target Start/End: Complemental strand, 25292813 - 25292590
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 158  Q
    ||||||||||||| || ||||||||||||| || ||||||||||||||||| ||| |||| || || | |||| ||||| ||||||||||||||||||||    
T  25292813 aaacttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgatgttctttggtttgaaa 25292714  T
Q  159 gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa 258  Q
    ||||   | ||||| ||||||| ||| |||||| |  |||||||||||||||||||||||||||| ||| |||||||||| | ||||| ||||| |||||    
T  25292713 gaggatgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaa 25292614  T
Q  259 tagagagttctttgaattgtttct 282  Q
    ||||| | ||| ||| ||||||||    
T  25292613 tagagcgatctgtgacttgtttct 25292590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 260
Target Start/End: Original strand, 26708541 - 26708758
Alignment:
Q  28 tttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctc 127  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||  ||| ||||||| |||||||||||| ||||||||||||||||     
T  26708541 tttccctaagagttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgttaccgatctt 26708640  T
Q  128 atggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaaca 227  Q
    ||||||||||               || |||||||| |||  | ||||||||| ||||||||||||| | ||||||||||| |||||||||||||| |||    
T  26708641 atggcgaaac---------------tttaaagaggtgaattttttcagtcgactagacttgatcgagcattcatcaaggatgtcatcgagcacatataca 26708725  T
Q  228 gcatctttgaggtcttgtaaccatagcttaata 260  Q
     |||||||||||||||||| ||||| |||||||    
T  26708726 acatctttgaggtcttgtagccataccttaata 26708758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 7580457 - 7580415
Alignment:
Q  196 actcatcaaggatatcatcgagcacataaacagcatctttgag 238  Q
    ||||||||||||||||||| |||||||| || |||||||||||    
T  7580457 actcatcaaggatatcatcaagcacatacaccgcatctttgag 7580415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 7100785 - 7100825
Alignment:
Q  198 tcatcaaggatatcatcgagcacataaacagcatctttgag 238  Q
    ||||||||||||||||| |||||||| || |||||||||||    
T  7100785 tcatcaaggatatcatcaagcacatacaccgcatctttgag 7100825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University