View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_high_22 (Length: 288)
Name: NF11109_high_22
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 4420539 - 4420797
Alignment:
| Q |
20 |
taagcctcatgtctctgcttttcagggttgtagtatcgctctatactaagaagtttttgcttctatgaagtcgcctctgtcgttccttcgatacatccct |
119 |
Q |
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| T |
4420539 |
taagcctcatgcctatgctttttagggttgtagtatcgctctatactaagaagtttttgcttctatgaagtcgcctctatcgttccttcgatacatccct |
4420638 |
T |
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| Q |
120 |
ataccataccatccttgctccttaaagatttccaagccacattgcacttcaacgctcctgcttcaagtcattgccaacgaatcttatcaacatctatctg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| || |
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| T |
4420639 |
ataccataccatccttgctccttaaagatttccaagccacattgcacttcaacgctcctgcttcaggtcattgccaacaaatcttatcaacatctatttg |
4420738 |
T |
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| Q |
220 |
attagagcttgaagatgaggcatcttacaatgcttcatgttgttctcttcgaatacaca |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4420739 |
attagagcttgaagatgaggcatcttacaatgcttcatgttgttctcttcgaatacaca |
4420797 |
T |
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