View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_high_23 (Length: 283)
Name: NF11109_high_23
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 12703493 - 12703618
Alignment:
| Q |
2 |
tcaagttcctcagtaataccactcctttcaagttgttcattctcataatcttctctctttaccaacttccaat---tgtctttgaacttcatagcaccgc |
98 |
Q |
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| T |
12703493 |
tcaagttcctcagtaataccactcctttcaagttgttcattctcataatcttcacccattagcaacttcccattaatgtcttttaacttcatagcaccac |
12703592 |
T |
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| Q |
99 |
caaaacaagcatgagagatagttgaa |
124 |
Q |
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|||||| ||||||||| |||||||| |
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| T |
12703593 |
caaaacttgcatgagaggtagttgaa |
12703618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 12703717 - 12703757
Alignment:
| Q |
226 |
gggcgtatccaaatcgaaacggagctttaaagaaccaaaac |
266 |
Q |
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| T |
12703717 |
gggcgtatccaaatcgaaacggagctttaaagaaccaaaac |
12703757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 8207378 - 8207427
Alignment:
| Q |
2 |
tcaagttcctcagtaataccactcctttcaagttgttcattctcataatc |
51 |
Q |
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||||||||||| || |||||||||||||| |||||||||||||||||||| |
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| T |
8207378 |
tcaagttcctcggttataccactcctttcgagttgttcattctcataatc |
8207427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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