View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_high_27 (Length: 249)
Name: NF11109_high_27
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 12105967 - 12106121
Alignment:
| Q |
14 |
gcataggcagacaagcttttggtttcttggtcacttttgcaatgtcagtgaaggacccttaaattagtattattaattaatagataaatagaaaacatgt |
113 |
Q |
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| T |
12105967 |
gcattggcagacaagatttaggtttgttggtcaattttgaaatgtcgatgaaggacccttaaattagtattattaattaagagataaacagaaaacatgt |
12106066 |
T |
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| Q |
114 |
tgaataaggtagacactaagtgcatgtttagatcagcggtgagttcggtagaatt |
168 |
Q |
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| T |
12106067 |
tgaagaaggtagacactaagtgcatgtttagatcagcggtgagtttggtagaatt |
12106121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 10676056 - 10675933
Alignment:
| Q |
30 |
ttttggtttcttggtcacttttgcaatgtcagtgaaggacccttaaattagtattattaattaatagataaatagaaaacatgttgaataaggtagacac |
129 |
Q |
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| T |
10676056 |
ttttggttccttggtcacttttgcaatgtcagtgaaggacccttaaattattatcattaattaagagataaatagaaaacatgttgaagaaggtagacac |
10675957 |
T |
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| Q |
130 |
taagtgcatgtttagatcagcggt |
153 |
Q |
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| T |
10675956 |
taagtacatgtttagatcagcggt |
10675933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 12094668 - 12094726
Alignment:
| Q |
130 |
taagtgcatgtttagatcagcggtgagttcggtagaattactggtgttgctgtctaact |
188 |
Q |
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| T |
12094668 |
taagtgcatgtttagatcagcggtgagttcggtagaattactggtgttgccgtctaact |
12094726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 12095017 - 12095062
Alignment:
| Q |
186 |
actactaatcgcattctaatacaattaactgtatacaagtatatct |
231 |
Q |
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| T |
12095017 |
actactaatcgcattctaatacaattaactgtatacaagtatatct |
12095062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 12106469 - 12106514
Alignment:
| Q |
186 |
actactaatcgcattctaatacaattaactgtatacaagtatatct |
231 |
Q |
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| T |
12106469 |
actactaattgcattctaatacaattaactgtatacaagaatatct |
12106514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 1404447 - 1404593
Alignment:
| Q |
26 |
aagcttttggtttcttggtcacttttgcaa--tgtcagtgaaggacccttaaattagtattattaattaatagataaatagaaaacatgttgaataaggt |
123 |
Q |
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| T |
1404447 |
aagcttttggtttcttggtcacttttgcaatgtgtgagtgaaggacccttaaattgttattattaa-taaaagacaaataacaaacacgttgaagaaggt |
1404545 |
T |
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| Q |
124 |
agac---actaagtgcatgtttagatcagcggtgagttcggtagaatt |
168 |
Q |
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| T |
1404546 |
aaacactactaagtgcatgtctggatcggcagggagttcagtagaatt |
1404593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 405164 - 405225
Alignment:
| Q |
14 |
gcataggcagacaagcttttggtttcttggtcacttttgcaatgtcagtgaaggacccttaa |
75 |
Q |
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| T |
405164 |
gcatatgcagacaagcttttggttttttggtcatttttgaaatgtggatgaaggatccttaa |
405225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 45809500 - 45809438
Alignment:
| Q |
106 |
aaacatgttgaataaggtagacactaagtgcatgtttagatcagcggtgagttcggtagaatt |
168 |
Q |
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| T |
45809500 |
aaacatgttgaagaaggtagacactaagtgtatgtttggatcggtggcgagttcggtagaatt |
45809438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 45809559 - 45809515
Alignment:
| Q |
14 |
gcataggcagacaagcttttggtttcttggtcacttttgcaatgt |
58 |
Q |
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| T |
45809559 |
gcataggcagataagcttttggtttctaggttacttttgcaatgt |
45809515 |
T |
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