View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_high_29 (Length: 239)
Name: NF11109_high_29
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_high_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 41543851 - 41544072
Alignment:
| Q |
18 |
ctaacgggttgttgtgtttcccttctcatgaagggtagatgcgtggactcacctaatttaataatactttttcacactcatttaaaagcctgtgtgccac |
117 |
Q |
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| T |
41543851 |
ctaacgggttgttgtgtttcccttctcatgaagggtagatgcgtggactcacctaatttaataatactttttcacactcatttaaaagcttgtgtgccac |
41543950 |
T |
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| Q |
118 |
cacaatatcagtcttacgtactctcaacaacacaaaaaacctccctcattgttatggcacccagaaaagatggacctacaaaggaaacaatgaatagagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41543951 |
cacaatatcagtcttacgtactctcaacaacacaaaaaacctccctcattgttatggcacccagaaaagatggacctacaaaggaaacaatgaatagagg |
41544050 |
T |
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| Q |
218 |
agcatggacccaagaggaagat |
239 |
Q |
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| T |
41544051 |
agcatggacccaagaggaagat |
41544072 |
T |
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