View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_high_30 (Length: 238)
Name: NF11109_high_30
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 34843578 - 34843364
Alignment:
| Q |
11 |
aagcagagaacgggttaggttagttcacaagtcacaatcaatcaaataaatataaacaatgaatgatacataattaagattaatttttcacttataggct |
110 |
Q |
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| T |
34843578 |
aagcaaagaacgggctaggttagttcacaagtcacaatcaatcaaataaatataaacaatgaatgatacataattaagattaatttttcacttataggct |
34843479 |
T |
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| Q |
111 |
ctttttatcatgatcaatcacattatacaagataaaattatagggacaatgtggccacttatactgaaaagatagattacatcactaaattatcaagtag |
210 |
Q |
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| T |
34843478 |
cttattatcatgatcaatcacattatacaagataaaattatagggacaatgtgcccacttatactgaaaagatagattacatcactaaattatcaagtag |
34843379 |
T |
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| Q |
211 |
ctggatgaaattttt |
225 |
Q |
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| T |
34843378 |
ctggatgaaattttt |
34843364 |
T |
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