View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_high_31 (Length: 235)

Name: NF11109_high_31
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_high_31
NF11109_high_31
[»] chr3 (14 HSPs)
chr3 (18-222)||(5692019-5692226)
chr3 (102-222)||(5677879-5677999)
chr3 (18-222)||(5791552-5791756)
chr3 (102-222)||(5668385-5668505)
chr3 (102-222)||(5743492-5743612)
chr3 (102-222)||(5780451-5780571)
chr3 (18-106)||(5668271-5668362)
chr3 (18-106)||(5677765-5677856)
chr3 (18-106)||(5743381-5743472)
chr3 (18-106)||(5780340-5780431)
chr3 (112-222)||(5751187-5751297)
chr3 (112-222)||(5788146-5788256)
chr3 (18-106)||(5751063-5751154)
chr3 (18-106)||(5788022-5788113)
[»] chr8 (1 HSPs)
chr8 (44-125)||(41490844-41490928)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 5692019 - 5692226
Alignment:
Q  18 caggaaacaatttgatgttcaggataatgaagattctttttatttctttg---acatcagctaccatatgttctatttggtctttcacaagtgtaacttc 114  Q
    |||||||||  |||||| |||||||  ||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5692019 caggaaacacgttgatgctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctttcacaagtgtaacttc 5692118  T
Q  115 tttgattaaaacatcaagtcccacccttttcaagtcaggagaattgcagatatgtttttctgacgatggaaaacaagaagctgtgtcgcctttgtgagtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5692119 tttgattaaaacatcaagtcccacccttttcaagtcaggagatatgcagatatgtttttctgacgatggaaaacaagaagctgcgtcgcctttgtgagtt 5692218  T
Q  215 ttcatctc 222  Q
    | ||||||    
T  5692219 tgcatctc 5692226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 5677879 - 5677999
Alignment:
Q  102 caagtgtaacttctttgattaaaacatcaagtcccacccttttcaagtcaggagaattgcagatatgtttttctgacgatggaaaacaagaagctgtgtc 201  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  ||||||||||||||||| |||||| |||||| ||||||||||     
T  5677879 caagtgtaacttctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtg 5677978  T
Q  202 gcctttgtgagttttcatctc 222  Q
    || ||||||||||| ||||||    
T  5677979 gcatttgtgagtttgcatctc 5677999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 5791552 - 5791756
Alignment:
Q  18 caggaaacaatttgatgttcaggataatgaagattctttttatttctttg---acatcagctaccatatgttctatttggtctttcacaagtgtaacttc 114  Q
    ||||||||| ||| ||| |||||||  ||||||||||||||||||||| |    ||||||||||| ||||||||||||||||    || ||||| | |||    
T  5791552 caggaaacactttcatgctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccgtatgttctatttggtc---aacgagtgtgatttc 5791648  T
Q  115 tttgattaaaacatcaagtcccacccttttcaagtcaggagaattgcagatatgtttttctgacgatggaaaacaagaagctgtgtcgcctttgtgagtt 214  Q
    |||||||||||||||||||||||| || ||||||||| ||||  ||||||||||| ||||||||| || ||||||||||  ||||| || ||||||||||    
T  5791649 tttgattaaaacatcaagtcccacactcttcaagtcaagagatatgcagatatgtgtttctgacggtgaaaaacaagaaattgtgtggcgtttgtgagtt 5791748  T
Q  215 ttcatctc 222  Q
    | ||||||    
T  5791749 tgcatctc 5791756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 5668385 - 5668505
Alignment:
Q  102 caagtgtaacttctttgattaaaacatcaagtcccacccttttcaagtcaggagaattgcagatatgtttttctgacgatggaaaacaagaagctgtgtc 201  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||||||| |||| |||||| |||||| ||||||||||     
T  5668385 caagtgtaacttctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgttattctaacgatgaaaaacatgaagctgtgtg 5668484  T
Q  202 gcctttgtgagttttcatctc 222  Q
    || ||||||||||| ||||||    
T  5668485 gcgtttgtgagtttgcatctc 5668505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 5743492 - 5743612
Alignment:
Q  102 caagtgtaacttctttgattaaaacatcaagtcccacccttttcaagtcaggagaattgcagatatgtttttctgacgatggaaaacaagaagctgtgtc 201  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||||| || |  ||||||||||| ||||||  | || ||||||||||| |||||     
T  5743492 caagtgtgatttctttgattaaaacatcaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtg 5743591  T
Q  202 gcctttgtgagttttcatctc 222  Q
    || ||||||||||| ||||||    
T  5743592 gcgtttgtgagtttgcatctc 5743612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 5780451 - 5780571
Alignment:
Q  102 caagtgtaacttctttgattaaaacatcaagtcccacccttttcaagtcaggagaattgcagatatgtttttctgacgatggaaaacaagaagctgtgtc 201  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||||| || |  ||||||||||| ||||||  | || ||||||||||| |||||     
T  5780451 caagtgtgatttctttgattaaaacatcaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtg 5780550  T
Q  202 gcctttgtgagttttcatctc 222  Q
    || ||||||||||| ||||||    
T  5780551 gcgtttgtgagtttgcatctc 5780571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 5668271 - 5668362
Alignment:
Q  18 caggaaacaatttgatgttcaggataatgaagattctttttatttctttga---catcagctaccatatgttctatttggtctttcacaagt 106  Q
    ||||||||| ||||||| |||||||  |||||||||||||||||||   ||   ||||||||||||||||||||||||||||||||||||||    
T  5668271 caggaaacagtttgatgctcaggatgttgaagattctttttatttccacgacatcatcagctaccatatgttctatttggtctttcacaagt 5668362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 5677765 - 5677856
Alignment:
Q  18 caggaaacaatttgatgttcaggataatgaagattctttttatttctttgacatc---agctaccatatgttctatttggtctttcacaagt 106  Q
    ||||||||| ||||||| |||||||  ||||||||||||| ||||||  ||||||   ||||||||||||||||||||||||||||||||||    
T  5677765 caggaaacagtttgatgctcaggatgttgaagattcttttcatttctacgacatcatcagctaccatatgttctatttggtctttcacaagt 5677856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 5743381 - 5743472
Alignment:
Q  18 caggaaacaatttgatgttcaggataatgaagattctttttatttctttg---acatcagctaccatatgttctatttggtctttcacaagt 106  Q
    ||||||||| ||||||| |||||||  ||||||||||| ||||||||| |    ||||||||||||||||||||||||||||||||||||||    
T  5743381 caggaaacactttgatgctcaggatgttgaagattcttcttatttcttcgtcatcatcagctaccatatgttctatttggtctttcacaagt 5743472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 5780340 - 5780431
Alignment:
Q  18 caggaaacaatttgatgttcaggataatgaagattctttttatttctttg---acatcagctaccatatgttctatttggtctttcacaagt 106  Q
    ||||||||| ||||||| |||||||  ||||||||||| ||||||||| |    ||||||||||||||||||||||||||||||||||||||    
T  5780340 caggaaacactttgatgctcaggatgttgaagattcttcttatttcttcgtcatcatcagctaccatatgttctatttggtctttcacaagt 5780431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 5751187 - 5751297
Alignment:
Q  112 ttctttgattaaaacatcaagtcccacccttttcaagtcaggagaattgcagatatgtttttctgacgatggaaaacaagaagctgtgtcgcctttgtga 211  Q
    |||||||||||||||||||||||||| |||||| |||||  |||   || |||||||| ||| ||||| || | | ||||||| ||||| || |||||||    
T  5751187 ttctttgattaaaacatcaagtcccaaccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtga 5751286  T
Q  212 gttttcatctc 222  Q
    |||| ||||||    
T  5751287 gtttgcatctc 5751297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 5788146 - 5788256
Alignment:
Q  112 ttctttgattaaaacatcaagtcccacccttttcaagtcaggagaattgcagatatgtttttctgacgatggaaaacaagaagctgtgtcgcctttgtga 211  Q
    |||||||||||||||||||||||||| |||||| |||||  |||   || |||||||| ||| ||||| || | | ||||||| ||||| || |||||||    
T  5788146 ttctttgattaaaacatcaagtcccaaccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtga 5788245  T
Q  212 gttttcatctc 222  Q
    |||| ||||||    
T  5788246 gtttgcatctc 5788256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 5751063 - 5751154
Alignment:
Q  18 caggaaacaatttgatgttcaggataatgaagattctttttatttctttg---acatcagctaccatatgttctatttggtctttcacaagt 106  Q
    ||||||| ||||||||| |||| ||  ||||||||||||||||||||| |    |||||||||| || ||||||||||||||| ||||||||    
T  5751063 caggaaataatttgatgctcagcatgttgaagattctttttatttcttcgtcatcatcagctactatgtgttctatttggtctgtcacaagt 5751154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 5788022 - 5788113
Alignment:
Q  18 caggaaacaatttgatgttcaggataatgaagattctttttatttctttg---acatcagctaccatatgttctatttggtctttcacaagt 106  Q
    ||||||| ||||||||| |||| ||  ||||||||||||||||||||| |    |||||||||| || ||||||||||||||| ||||||||    
T  5788022 caggaaataatttgatgctcagcatgttgaagattctttttatttcttcgtcatcatcagctactatgtgttctatttggtctgtcacaagt 5788113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 41490928 - 41490844
Alignment:
Q  44 atgaagattctttttatttctt--tga-catcagctaccatatgttctatttggtctttcacaagtgtaacttctttgattaaaa 125  Q
    |||||||| |||||||||||||  | | ||||| ||||||| |||| |||||||||  | |||||||||| ||||||||||||||    
T  41490928 atgaagatgctttttatttcttcatcatcatcatctaccatgtgttttatttggtcaattacaagtgtaatttctttgattaaaa 41490844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University