View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_high_32 (Length: 230)
Name: NF11109_high_32
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 37304942 - 37304999
Alignment:
| Q |
163 |
cttacgcttccatttcttggatctgatgctgtgtatgacggtgataacgtttcttctt |
220 |
Q |
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| T |
37304942 |
cttacgcttccatttcttggatctgatgctgtgtatgacggtgataacgtttcttctt |
37304999 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37304780 - 37304826
Alignment:
| Q |
1 |
ctctgcttagttccttcctttgctggtcatcagggtgtggacattcc |
47 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37304780 |
ctctgcttagttccttcctttgcttgtcatcagggtgtggacattcc |
37304826 |
T |
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