View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_high_34 (Length: 224)

Name: NF11109_high_34
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_high_34
NF11109_high_34
[»] chr1 (21 HSPs)
chr1 (1-203)||(10694432-10694633)
chr1 (1-206)||(50561490-50561694)
chr1 (1-206)||(18814660-18814864)
chr1 (1-206)||(34688028-34688232)
chr1 (1-206)||(41962534-41962738)
chr1 (8-206)||(41829656-41829852)
chr1 (1-206)||(31620130-31620334)
chr1 (1-206)||(34692556-34692760)
chr1 (1-206)||(44406801-44407005)
chr1 (1-206)||(52310276-52310479)
chr1 (1-203)||(38844816-38845017)
chr1 (1-206)||(17671891-17672095)
chr1 (1-206)||(45005211-45005415)
chr1 (1-202)||(36682480-36682680)
chr1 (1-206)||(52521223-52521427)
chr1 (1-142)||(47135842-47135982)
chr1 (1-190)||(17709425-17709613)
chr1 (8-206)||(12245500-12245693)
chr1 (84-206)||(48340838-48340960)
chr1 (1-121)||(16031287-16031406)
chr1 (1-76)||(51965466-51965541)
[»] chr4 (31 HSPs)
chr4 (1-206)||(40622604-40622808)
chr4 (1-206)||(8531271-8531475)
chr4 (1-206)||(17740495-17740698)
chr4 (1-215)||(54331267-54331480)
chr4 (1-206)||(41983866-41984069)
chr4 (1-206)||(38008714-38008918)
chr4 (1-206)||(55998345-55998549)
chr4 (1-206)||(5271908-5272112)
chr4 (1-206)||(14829144-14829348)
chr4 (1-206)||(19831030-19831234)
chr4 (8-206)||(7643425-7643623)
chr4 (1-208)||(22115682-22115888)
chr4 (8-206)||(34056196-34056393)
chr4 (1-206)||(2776729-2776934)
chr4 (29-206)||(7847505-7847681)
chr4 (1-206)||(36514973-36515177)
chr4 (1-206)||(37701230-37701434)
chr4 (1-203)||(47557062-47557260)
chr4 (8-206)||(17699636-17699833)
chr4 (8-206)||(28973523-28973719)
chr4 (1-206)||(23479353-23479557)
chr4 (1-206)||(53342863-53343067)
chr4 (8-206)||(13628514-13628712)
chr4 (9-206)||(33502634-33502828)
chr4 (1-160)||(21353535-21353693)
chr4 (84-183)||(36857603-36857702)
chr4 (2-72)||(35495310-35495380)
chr4 (1-72)||(28134831-28134902)
chr4 (147-206)||(35495234-35495293)
chr4 (129-206)||(39742627-39742704)
chr4 (1-58)||(36857539-36857596)
[»] chr3 (26 HSPs)
chr3 (1-206)||(40824288-40824492)
chr3 (1-206)||(11597578-11597782)
chr3 (1-206)||(48520658-48520862)
chr3 (1-206)||(55294399-55294602)
chr3 (1-206)||(8242923-8243127)
chr3 (1-206)||(35087456-35087660)
chr3 (1-206)||(31368633-31368838)
chr3 (1-206)||(50770865-50771069)
chr3 (1-206)||(52462549-52462753)
chr3 (1-206)||(50741805-50742009)
chr3 (1-189)||(48977116-48977303)
chr3 (1-206)||(6103744-6103949)
chr3 (8-206)||(16342096-16342292)
chr3 (8-206)||(18741846-18742043)
chr3 (1-206)||(21699205-21699409)
chr3 (1-206)||(32755946-32756150)
chr3 (1-203)||(49113497-49113698)
chr3 (1-206)||(54934238-54934442)
chr3 (1-206)||(54513215-54513421)
chr3 (1-181)||(52853087-52853266)
chr3 (84-206)||(51248818-51248940)
chr3 (93-206)||(23194712-23194825)
chr3 (147-206)||(50802818-50802877)
chr3 (147-206)||(50873000-50873059)
chr3 (164-206)||(2843541-2843583)
chr3 (92-132)||(23937032-23937072)
[»] chr7 (22 HSPs)
chr7 (1-206)||(33638296-33638500)
chr7 (1-206)||(23299345-23299548)
chr7 (1-206)||(27734671-27734874)
chr7 (8-206)||(42918307-42918504)
chr7 (8-206)||(17478357-17478554)
chr7 (8-206)||(17574660-17574857)
chr7 (8-206)||(17482792-17482989)
chr7 (8-206)||(17570225-17570422)
chr7 (1-206)||(8925532-8925736)
chr7 (1-206)||(14309290-14309495)
chr7 (1-206)||(17470168-17470372)
chr7 (1-206)||(17582842-17583046)
chr7 (1-206)||(47174900-47175103)
chr7 (1-204)||(5963133-5963336)
chr7 (1-206)||(42687989-42688195)
chr7 (1-206)||(42826979-42827183)
chr7 (8-206)||(11500303-11500500)
chr7 (1-206)||(19521588-19521790)
chr7 (1-206)||(23766061-23766265)
chr7 (1-184)||(33031297-33031479)
chr7 (55-206)||(9149815-9149965)
chr7 (19-206)||(41262001-41262182)
[»] chr6 (24 HSPs)
chr6 (1-206)||(33321079-33321283)
chr6 (1-206)||(34321512-34321716)
chr6 (1-206)||(18598611-18598816)
chr6 (8-206)||(17939944-17940141)
chr6 (1-206)||(1072889-1073093)
chr6 (1-206)||(34856369-34856573)
chr6 (1-206)||(2521582-2521786)
chr6 (1-206)||(14887564-14887768)
chr6 (1-190)||(15276053-15276241)
chr6 (1-205)||(35041505-35041708)
chr6 (1-206)||(7222727-7222932)
chr6 (1-206)||(18312208-18312411)
chr6 (1-205)||(4424902-4425105)
chr6 (84-206)||(11933108-11933230)
chr6 (8-206)||(30044632-30044829)
chr6 (8-206)||(22373469-22373665)
chr6 (84-206)||(33814490-33814612)
chr6 (8-206)||(21799967-21800162)
chr6 (1-129)||(14831934-14832061)
chr6 (103-206)||(25540450-25540553)
chr6 (162-206)||(14832060-14832104)
chr6 (22-76)||(22976118-22976172)
chr6 (22-76)||(23812229-23812283)
chr6 (7-67)||(2625220-2625280)
[»] scaffold0115 (1 HSPs)
scaffold0115 (1-206)||(380-584)
[»] chr8 (29 HSPs)
chr8 (1-206)||(3751291-3751495)
chr8 (1-206)||(44382406-44382610)
chr8 (1-206)||(9761445-9761649)
chr8 (1-206)||(41977676-41977880)
chr8 (3-206)||(6477099-6477301)
chr8 (1-206)||(45293177-45293382)
chr8 (3-206)||(33423865-33424067)
chr8 (8-206)||(19248299-19248496)
chr8 (8-206)||(19321483-19321680)
chr8 (1-206)||(14078436-14078640)
chr8 (1-206)||(38962346-38962550)
chr8 (1-206)||(38992690-38992894)
chr8 (1-206)||(42810539-42810743)
chr8 (8-203)||(22332336-22332530)
chr8 (8-206)||(38993869-38994065)
chr8 (8-206)||(44599886-44600082)
chr8 (1-206)||(19395168-19395372)
chr8 (1-206)||(36597641-36597845)
chr8 (1-206)||(23522266-23522467)
chr8 (1-206)||(27273410-27273613)
chr8 (1-206)||(22946406-22946606)
chr8 (9-206)||(41629073-41629270)
chr8 (44-206)||(5835816-5835977)
chr8 (1-120)||(41156817-41156935)
chr8 (99-206)||(42785443-42785550)
chr8 (100-198)||(41533473-41533571)
chr8 (1-76)||(12760593-12760667)
chr8 (1-71)||(30826632-30826702)
chr8 (130-206)||(30826699-30826775)
[»] chr2 (21 HSPs)
chr2 (1-206)||(18092340-18092544)
chr2 (1-206)||(1514605-1514809)
chr2 (1-206)||(26822088-26822292)
chr2 (9-206)||(36632670-36632866)
chr2 (1-206)||(19126304-19126507)
chr2 (1-206)||(45399255-45399459)
chr2 (2-206)||(21098158-21098361)
chr2 (8-206)||(26827975-26828171)
chr2 (8-206)||(33907707-33907903)
chr2 (1-206)||(30570168-30570372)
chr2 (1-206)||(42885842-42886046)
chr2 (7-206)||(11448205-11448403)
chr2 (8-206)||(11707090-11707286)
chr2 (1-206)||(16723969-16724173)
chr2 (1-206)||(35285911-35286111)
chr2 (1-206)||(33663416-33663621)
chr2 (1-190)||(45204655-45204842)
chr2 (49-206)||(27364456-27364612)
chr2 (26-206)||(19167478-19167657)
chr2 (101-206)||(5252901-5253006)
chr2 (1-123)||(4812015-4812136)
[»] chr5 (25 HSPs)
chr5 (1-203)||(33706393-33706594)
chr5 (1-206)||(21030508-21030712)
chr5 (8-206)||(3029161-3029358)
chr5 (1-206)||(1851576-1851780)
chr5 (1-206)||(7286076-7286280)
chr5 (9-206)||(20995513-20995709)
chr5 (1-206)||(41781240-41781445)
chr5 (1-206)||(33610756-33610960)
chr5 (1-206)||(20350333-20350538)
chr5 (1-206)||(2195564-2195768)
chr5 (1-206)||(3150220-3150424)
chr5 (1-206)||(27066271-27066475)
chr5 (1-206)||(33930213-33930417)
chr5 (8-206)||(10511981-10512178)
chr5 (1-206)||(26320693-26320895)
chr5 (8-190)||(35539556-35539736)
chr5 (8-206)||(38934868-38935065)
chr5 (1-206)||(4882671-4882875)
chr5 (1-206)||(30689710-30689916)
chr5 (8-206)||(3396752-3396949)
chr5 (1-206)||(19448393-19448598)
chr5 (3-206)||(17996969-17997171)
chr5 (8-206)||(34374000-34374196)
chr5 (90-206)||(12420213-12420329)
chr5 (3-206)||(20758346-20758548)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-206)||(12547-12751)
[»] scaffold0032 (2 HSPs)
scaffold0032 (1-206)||(11032-11236)
scaffold0032 (1-206)||(4583-4787)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-206)||(101143-101347)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-206)||(25978-26182)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-206)||(10361-10565)
[»] scaffold0010 (2 HSPs)
scaffold0010 (7-206)||(120344-120542)
scaffold0010 (8-206)||(176900-177096)
[»] scaffold0110 (1 HSPs)
scaffold0110 (8-206)||(48854-49050)
[»] scaffold1634 (1 HSPs)
scaffold1634 (1-206)||(651-854)
[»] scaffold0242 (1 HSPs)
scaffold0242 (8-206)||(3038-3234)
[»] scaffold0121 (1 HSPs)
scaffold0121 (84-203)||(14959-15078)
[»] scaffold0122 (1 HSPs)
scaffold0122 (1-154)||(851-1003)
[»] scaffold0079 (1 HSPs)
scaffold0079 (127-206)||(10353-10432)
[»] scaffold0103 (1 HSPs)
scaffold0103 (7-76)||(12502-12571)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 10694633 - 10694432
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  10694633 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 10694535  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10694534 aaaaatatgcaagttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagacaatattatct 10694435  T
Q  201 tca 203  Q
    |||    
T  10694434 tca 10694432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 50561490 - 50561694
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  50561490 agttacgaaaaatacttaggcggtcaatggttcaacttttgctgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 50561588  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||| |||| |||||||    
T  50561589 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctaaacaagattatct 50561688  T
Q  201 tcactc 206  Q
    ||||||    
T  50561689 tcactc 50561694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 18814660 - 18814864
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  18814660 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacct 18814758  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  18814759 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 18814858  T
Q  201 tcactc 206  Q
    ||||||    
T  18814859 tcactc 18814864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34688028 - 34688232
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  34688028 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacct 34688126  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  34688127 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 34688226  T
Q  201 tcactc 206  Q
    ||||||    
T  34688227 tcactc 34688232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 41962738 - 41962534
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  41962738 agttacaaaaaatacttaggcggtcaatggtttaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacct 41962640  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||| ||| ||||||||||| | |||||||    
T  41962639 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcacctttactttaatcctagactagattatct 41962540  T
Q  201 tcactc 206  Q
    ||||||    
T  41962539 tcactc 41962534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 41829852 - 41829656
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||| |||       ||||||||||||||||||||||||    
T  41829852 aaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtaataagttaattttt--atctagagaagccacctaaaaata 41829755  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||||||||    
T  41829754 tgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactc 41829656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 31620130 - 31620334
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||| ||||| | |||||||||||||||||| |||       |||||||||||||||||    
T  31620130 agttacaaaaaatacttaggcggccaatggttcaaattttgccgataacatgtgttagaggtaggtgataagttaatttttt-atctagagaagccacct 31620228  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  31620229 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 31620328  T
Q  201 tcactc 206  Q
    ||||||    
T  31620329 tcactc 31620334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34692556 - 34692760
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  34692556 agttacaaaaaatacttaggcggccaatagttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 34692654  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||| | ||||| |    
T  34692655 aaaaatatgtacgttcaagtcgtttccaaataaagatttggtgttcataatccgcactttcaacagatcaccttaactctaatcctagactagattatat 34692754  T
Q  201 tcactc 206  Q
    ||||||    
T  34692755 tcactc 34692760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 44406801 - 44407005
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  44406801 agttacaaaaaatacttaggcggccaatggttcaaattttgtcgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 44406899  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||  |||||||||||||||||| ||||| |||||||||    
T  44406900 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgattcgcactttcaactaatcaccttaactctaatcatagactatattatct 44406999  T
Q  201 tcactc 206  Q
    ||||||    
T  44407000 tcactc 44407005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 52310276 - 52310479
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||       ||| |||||||||||||    
T  52310276 agttacgaaaaatacttaggcggtcaattgttcaacttttgccgagaacatatgttagaggtaggtgataggctaatttttg-atccagagaagccacct 52310374  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||| |||||||||||| ||||||||||| ||||| || ||||| |||||||| | ||||||||||||||||||||||||||||| |||||||    
T  52310375 aaaaatatgcatgttcaagtcgttcccaaataaaga-ttggtgttcatgattcgcactttcagcagatcaccttaactctaatcctagacaagattatct 52310473  T
Q  201 tcactc 206  Q
    | ||||    
T  52310474 ttactc 52310479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 38845017 - 38844816
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| |||| |||||||||||| || ||||||||||||||  |||       |||||||||||||||||    
T  38845017 agttacaaaaaatacttaggcggccaatggttcaaatttttccgagaacatatgtttgaggtaggtgataatttaatttttg-atctagagaagccacct 38844919  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||||||  |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  38844918 aaaaatatgcacgttcaagtcgttttcaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatct 38844819  T
Q  201 tca 203  Q
    |||    
T  38844818 tca 38844816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 17671891 - 17672095
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       | |||||||||||||||    
T  17671891 agttaagaaaaattcttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-acctagagaagccacct 17671989  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || ||||| ||||||||||| || |||||| ||||||| ||||||||||||||| |||||||||| |  | |||||||    
T  17671990 aaaaatatgcacgttcaagtcattcccaaaaaaagatttggtgttcatgatctgcactttcaacagatcaccttaattctaatcctatagtagattatct 17672089  T
Q  201 tcactc 206  Q
    ||||||    
T  17672090 tcactc 17672095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 45005211 - 45005415
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||       | |||||||||||||||    
T  45005211 agttacgaaaaatacttaggcggccaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-acctagagaagccacct 45005309  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || ||||||||| ||||||| || |||||||||||||| |||| || || |||| |||||||||| || | |||||||    
T  45005310 aaaaatatgcacgttcaagtcattcccaaataaatatttggtgttcatgatccgcactttcaacatattactttaattctaatcctatactagattatct 45005409  T
Q  201 tcactc 206  Q
    ||||||    
T  45005410 tcactc 45005415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 36682480 - 36682680
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||       | |||||||||||||||    
T  36682480 agttacgaaaaatacttaggcggccaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaa-tttttgacctagagaagccacct 36682578  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || ||||||||| ||||||| || ||||| |||||||| |||| || || |||| |||||||||| || | |||||||    
T  36682579 aaaaatatgcacgttcaagtcattcccaaataaatatttggtgttcatgattcgcactttcaacatattactttaattctaatcctatactagattatct 36682678  T
Q  201 tc 202  Q
    ||    
T  36682679 tc 36682680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 52521427 - 52521223
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||| | ||||| ||||| |||||| ||||| |||| ||||||| |||||||||| |||       |||||||||||||||||    
T  52521427 agttacaaaaaatacttaggcagccaatgtttcaaattttgctgagaagatatgttagaggcaggtgataagttaatttttg-atctagagaagccacct 52521329  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||||||  |||||||||||||||| || |  ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  52521328 aaaaatatgcacgttcaagtcgttttcaaataaagatttggtgttcacaatccgcactttcaacagatcaccttaactctaatcctagacaagattatct 52521229  T
Q  201 tcactc 206  Q
    ||||||    
T  52521228 tcactc 52521223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 47135842 - 47135982
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  47135842 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaa-ttttttatctagagaagccacct 47135940  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggt 142  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  47135941 aaaaatatgcacgttcaagtcgttcccaaataaaaatttggt 47135982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 17709613 - 17709425
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||       ||||| ||||| ||| |    
T  17709613 agttacggaaaatacttaggcggccaatgcttcaacttttgccgagaacatatgttagaggtaggtaataagctaatttttg-atctatagaaggcacat 17709515  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagac 190  Q
    ||||||||||||||||||| |||| |||||||||||| | || || ||||||| |||||| |||||||||||||||||||||||||||||    
T  17709514 aaaaatatgcacgttcaagccgttcccaaataaagatattgtgttcatgatccacactttgaacagatcaccttaactctaatcctagac 17709425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 12245693 - 12245500
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||       | ||| ||||||||||||||||||    
T  12245693 aaaaatacttaggcggccaatggttcaacttttgccgagaacatat----gaggtaggtgataagctaatttttt-acctaaagaagccacctaaaaata 12245599  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||| || ||||||||||||||||| || ||||||||||| || |||| |||||||||| ||||||| || || | |||||||||||||    
T  12245598 tgcacgttcaagtcattcccaaataaagatttggtattcatgatccgcacgttcaacatatcaccttaattctaatcatatactagattatcttcactc 12245500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 48340838 - 48340960
Alignment:
Q  84 atctagagaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaat 183  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||||||| |||||||    
T  48340838 atctagagaagccacctaaaaatatgcacgatcaagtcgttcccaaataaagatttggtgttcatgatccgcactttgaacatatcaccttatctctaat 48340937  T
Q  184 cctagacaatattatcttcactc 206  Q
    | ||||| | |||||||||||||    
T  48340938 cttagactagattatcttcactc 48340960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 16031406 - 16031287
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||       | |||||||||||||||    
T  16031406 agttacgaaaaatacttaggcggccaatgattcaacttttgccgagaacatatgttagaggtaggtgataagctaa-tttttgacctagagaagccacct 16031308  T
Q  101 aaaaatatgcacgttcaagtc 121  Q
    |||||||||||| ||||||||    
T  16031307 aaaaatatgcacattcaagtc 16031287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 51965541 - 51965466
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaa 76  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  51965541 agttacgaaaaatacttacgcggtcaatgattcaacttttgccgagaacatatgttagaggtaggtgagaagctaa 51965466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 40622604 - 40622808
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  40622604 agttacgaaaaatacttaggcggtcaatggttcaacttttgtcgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 40622702  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  40622703 aaaaatatgcacgttcaagtcgttctcaaataaagatttggtcttcatgatccgcatttttaacagatcaccttaactctaatcctagacaagattatct 40622802  T
Q  201 tcactc 206  Q
    ||||||    
T  40622803 tcactc 40622808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 8531271 - 8531475
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  8531271 agttacgaaaaatacttaggcggtcaatggttaaacttttgtcgagaacatatgttagaggtaggtgataagctaatttttt-atctagagaagccacct 8531369  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| || |||||||||||||||||||| ||||||| |||||||    
T  8531370 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaatagatcaccttaactctaatcatagacaagattatct 8531469  T
Q  201 tcactc 206  Q
    ||||||    
T  8531470 tcactc 8531475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 17740495 - 17740698
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  17740495 agttacaaaaaatacttaggcggtcaatgattaaacttttgccgagaacatatgttagaggtaggtgataagctaattttg--atctagagaagccacct 17740592  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  17740593 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacagaccaccttaactctaatcctagaaaatattatct 17740692  T
Q  201 tcactc 206  Q
    ||||||    
T  17740693 tcactc 17740698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 54331480 - 54331267
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  54331480 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 54331382  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  54331381 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatct 54331282  T
Q  201 tcactctctgctcct 215  Q
    |||||| ||| ||||    
T  54331281 tcactcactgatcct 54331267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 41984069 - 41983866
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  41984069 agttatgaaaaatacataggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttta--atctagagaagccacct 41983972  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||||||| || | |||||||    
T  41983971 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgctctttcaacagatcaccttaactctaatcctaaactagattatct 41983872  T
Q  201 tcactc 206  Q
    ||||||    
T  41983871 tcactc 41983866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 38008714 - 38008918
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  38008714 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 38008812  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  38008813 aaaaatatgcacgttcaagtcgctcccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagacaagattatct 38008912  T
Q  201 tcactc 206  Q
    ||||||    
T  38008913 tcactc 38008918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 55998549 - 55998345
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  55998549 agttacgaaaaatacttaggcggtcaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 55998451  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||| || ||| || ||||||||||||||||||||||||||||| | |||||||    
T  55998450 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttgatgacccacacgttgaacagatcaccttaactctaatcctagactagattatct 55998351  T
Q  201 tcactc 206  Q
    ||||||    
T  55998350 tcactc 55998345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5272112 - 5271908
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  5272112 agttacaaaaaatacttaggcggccaatggttcaaattttgtcgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacct 5272014  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  5272013 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactaaattatct 5271914  T
Q  201 tcactc 206  Q
    ||||||    
T  5271913 tcactc 5271908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 14829348 - 14829144
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||| ||||| | |||||||||||||||||| |||       |||||||||||||||||    
T  14829348 agttacaaaaaatacttaggcggccaatggttcaaattttgccgataacatgtgttagaggtaggtgataagttaatttttt-atctagagaagccacct 14829250  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  14829249 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 14829150  T
Q  201 tcactc 206  Q
    ||||||    
T  14829149 tcactc 14829144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 19831234 - 19831030
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||| |||       || ||||||||||||||    
T  19831234 agttacaaaaaatacttaggcggccaatgattcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atatagagaagccacct 19831136  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||| ||||||| || ||||||| |||||| ||||||||||||||||||||||||||||| | |||||||    
T  19831135 aaaaatatgcacgttcaagtcgtttccaaataaatatttggtgttcatgatccacactttcaacagatcaccttaactctaatcctagactagattatct 19831036  T
Q  201 tcactc 206  Q
    ||||||    
T  19831035 tcactc 19831030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 7643623 - 7643425
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||  ||||||||||| |||||| |||||||||| |||||||||||||||||| |||       ||||||||||||| ||||| ||||    
T  7643623 aaaaatacttaggcgcccaatggttcaaattttgctgagaacatatgttagaggtaggtgataagttaattttttgatctagagaagccgcctaataata 7643524  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||    
T  7643523 tgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattatcttcactc 7643425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22115888 - 22115682
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  22115888 agttacaaaaaatacttaggcggccaatggttcaaattttgtcgtgaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 22115790  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||  | || ||||| |||||||| ||||||||||||||||||||||||||||| | |||||||    
T  22115789 aaaaatatgcacgttcaagtcgtttccaaataaagatttaatgttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatct 22115690  T
Q  201 tcactctc 208  Q
    ||||||||    
T  22115689 tcactctc 22115682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 34056393 - 34056196
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||| |||       ||||||||||||||||||||||||    
T  34056393 aaaaatacttaggcggccaatggttcaaattttgccgaaaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacctaaaaata 34056295  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||| |||||| |||| |||||||||||| ||||||||||||| ||||| |||||||    
T  34056294 tgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccacactttcaacaaatcaccttaactataatcctagacaagattatattcactc 34056196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2776729 - 2776934
Alignment:
Q  1 agttacgaaaaatactta-ggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacc 99  Q
    |||||| ||||||||||| ||||| ||||||||||| ||||| || |||||||| |||||||||||||||||| |||       ||||||||||||||||    
T  2776729 agttacaaaaaatacttaaggcggccaatggttcaaattttgtcgtgaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacc 2776827  T
Q  100 taaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatc 199  Q
    ||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| |||| | ||||||    
T  2776828 taaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgattcgcactttcaacagatcaccttaactctaatcccagactagattatc 2776927  T
Q  200 ttcactc 206  Q
    |||||||    
T  2776928 ttcactc 2776934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 7847505 - 7847681
Alignment:
Q  29 ggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaatatgcacgttcaagtcgttacca 128  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||       | ||||||||||||||||||||||||||| ||||||||||| |||    
T  7847505 ggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-acctagagaagccacctaaaaatatgcacattcaagtcgttccca 7847603  T
Q  129 aataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||    
T  7847604 aataaagatttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattatcttcactc 7847681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 36515177 - 36514973
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  36515177 agttacaaaaaatacttaggcggccaatggttcaaattttgtcgtgaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 36515079  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||| || || ||||||||||||||||| || ||||| | |||||||||||||||||||||||| ||||||||||| | |||||||    
T  36515078 aaaaatatgcacgttcaaatcatttccaaataaagatttggtgttcatgattcacacttttaacagatcaccttaactttaatcctagactagattatct 36514979  T
Q  201 tcactc 206  Q
    ||||||    
T  36514978 tcactc 36514973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 37701434 - 37701230
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  37701434 agttacaaaaaatacttaggcggccaattgttcaaattttaccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 37701336  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||| |||||||||||| ||||||||||||||||| || |||||||| ||||| |||| ||||||||||||||||||||| || | |||||||    
T  37701335 aaaaatatgcatgttcaagtcgtttccaaataaagatttggtgttcatgatccgtactttcaacatatcaccttaactctaatcctaaactagattatct 37701236  T
Q  201 tcactc 206  Q
    ||||||    
T  37701235 tcactc 37701230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 47557260 - 47557062
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||       || ||||||||||||||    
T  47557260 agttacaaaaaatacttaggcggtcaatgatgcaacttttgccgagaacatatgttagaggtaggtgataagctaa-ttttttatgtagagaagccacct 47557162  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||     |||||||||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  47557161 aaaaatatgcacgttcaagtc---cacaaataaagatttggtgttcatgattcgcaatttcaacagatcaccttaactctaatcctagacaagattatct 47557065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 17699636 - 17699833
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||||||| | ||||||| |||||||||||||||||| |||       ||||||||||||||||||||||||    
T  17699636 aaaaatacttaggcggccaatggttcaaattttgccaaaaacatatgttagaggtaggtgataagttaattttta-atctagagaagccacctaaaaata 17699734  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||  ||||||||||| | ||||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||    
T  17699735 tgcatcttcaagtcgtttctaaataaagatttggtgttcatgatccgcactttcaacagatcacattaactctaatcctagactagattatcttcactc 17699833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 28973523 - 28973719
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||| |||       |||||||||||||| |||||||||    
T  28973523 aaaaatacttaggcggccaatggttcaaattt-gccgagaacagatgttagaggtaggtgataagttaatttttg-atctagagaagccatctaaaaata 28973620  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  28973621 tgcacgttcaagtcgttcccaaataaagatttggtgttcatgatctgcactttcaacagatcaccttaactctaatcctagactaaattatattcactc 28973719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 23479353 - 23479557
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| |||       ||||||||||||| |||    
T  23479353 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtatgtgataagttaatttttt-atctagagaagccgcct 23479451  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||| ||||||||||||||| || ||||||||||||||||| || |||||| ||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  23479452 aaaaacatgcacgttcaagtcatttccaaataaagatttggtgttcatgatctgcactttcaacatatcaccttaactttaatcctagactagattatct 23479551  T
Q  201 tcactc 206  Q
    ||||||    
T  23479552 tcactc 23479557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 53342863 - 53343067
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||||| ||||||||| | |||| |||||||||| |||||| ||||||||||| |||       |||||||||||||||||    
T  53342863 agttacaaaaaatacttaggcggtccatggttcaaatattgctgagaacatatgttagagataggtgataagttaatttttg-atctagagaagccacct 53342961  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||| ||||| ||||||||||||||||| || ||||||| |||||| |||| ||||||||||||||||||||| || | |||||||    
T  53342962 aaaaatatgcacgttcaattcgtttccaaataaagatttggtgttcatgatccacactttcaacaaatcaccttaactctaatcctaaactagattatct 53343061  T
Q  201 tcactc 206  Q
    ||||||    
T  53343062 tcactc 53343067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 13628514 - 13628712
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaa-at 106  Q
    ||||||||||  ||||  |||||||||| ||||||||||||||||| |||||||||||||||||| |||       ||||||||||||||||||||| ||    
T  13628514 aaaaatacttttgcggctaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacctaaaatat 13628612  T
Q  107 atgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||||||| ||||||||||||||||| || ||||| || ||||| || |||||||||||||||||||||||||| | |||||||||||||    
T  13628613 atgcacgttcaagtcgtttccaaataaagatttggtgttcatgattcgtactttcaatagatcaccttaactctaatcctagactagattatcttcactc 13628712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 33502828 - 33502634
Alignment:
Q  9 aaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaatat 108  Q
    |||||||||||||||  |||| ||||| ||||||||||||||||| |||||||||||||||||  |||       |||||||||||| |||||| |||||    
T  33502828 aaaatacttaggcggctaatg-ttcaaattttgccgagaacatatgttagaggtaggtgataaattaatttttg-atctagagaagc-acctaataatat 33502732  T
Q  109 gcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||| |||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||| | |||||||||||||    
T  33502731 gcatgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctagactagattatcttcactc 33502634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 21353535 - 21353693
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||| || |||||||| |||||||| ||||||||| |||       |||||||||||||||||    
T  21353535 agttacaaaaaatacttaggcggccaatggttcaaattttgtcgtgaacatatgttagaggtgggtgataagttaatttttg-atctagagaagccacct 21353633  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttt 160  Q
    ||||||||||| |||||||||||| ||||||||||||||||| || ||||| ||||||||    
T  21353634 aaaaatatgcatgttcaagtcgtttccaaataaagatttggtgttcatgattcgcacttt 21353693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 36857603 - 36857702
Alignment:
Q  84 atctagagaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaat 183  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||    
T  36857603 atctagagaagccacctaaaaatatgcaggttcaagtcgttttcaaataaagatttggtgttcatgatgcgcactttcaacagatcaccttaactctaat 36857702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 35495380 - 35495310
Alignment:
Q  2 gttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataag 72  Q
    ||||| ||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  35495380 gttacaaaaaatacttaggtggccaatggttcaaattttgccgagaacatatgttagaggtatgtgataag 35495310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28134902 - 28134831
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataag 72  Q
    |||||| ||||||| |||||||  ||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  28134902 agttacaaaaaataattaggcgaccaatggttcgaattttgccgagaacatatgttagaggtaggtgataag 28134831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 35495293 - 35495234
Alignment:
Q  147 atgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||| |||| ||||||||||||||||||||| || | |||||||||||||    
T  35495293 atgatccgcactttcaacatatcaccttaactctaatcctacactagattatcttcactc 35495234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 39742704 - 39742627
Alignment:
Q  129 aataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||| | || ||||| | |||||| |||| |||||||||||||||||| ||||| | |||||||||||||    
T  39742704 aataaagatttgatgttcatgatacacactttcaacatatcaccttaactctaatcatagactagattatcttcactc 39742627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36857539 - 36857596
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattag 58  Q
    |||||| ||||||||||||| || |||| |||||| |||| |||||||||||||||||    
T  36857539 agttacaaaaaatacttaggtggccaatcgttcaaattttaccgagaacatatattag 36857596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 40824492 - 40824288
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  40824492 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaattttta-atctagagaagccacct 40824394  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||  |||||| |||||||    
T  40824393 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgtttatgatccgcactttcaacagatcaccttaactctaatctcagacaagattatct 40824294  T
Q  201 tcactc 206  Q
    ||||||    
T  40824293 tcactc 40824288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 11597782 - 11597578
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  11597782 agttacgaaaaatacttaggcggtcaatgattcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 11597684  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  11597683 aaaaatatgcacattcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcttagacaagattatct 11597584  T
Q  201 tcactc 206  Q
    ||||||    
T  11597583 tcactc 11597578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 48520862 - 48520658
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  48520862 agttacgaaaaatacttaagcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 48520764  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||||| |||||||    
T  48520763 aaaaatatgcacgttcaagttgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatccaagacaagattatct 48520664  T
Q  201 tcactc 206  Q
    ||||||    
T  48520663 tcactc 48520658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 55294602 - 55294399
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||       ||||| |||||||||||    
T  55294602 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaatatatgttagaggtaggtgata-gctaatttttt-atctaaagaagccacct 55294505  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  55294504 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagacaagattatct 55294405  T
Q  201 tcactc 206  Q
    ||||||    
T  55294404 tcactc 55294399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 8242923 - 8243127
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  8242923 agttaccaaaaatacttaggcggccaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 8243021  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||| | |||||||    
T  8243022 aaaaatatacacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactccaatcctagactagattatct 8243121  T
Q  201 tcactc 206  Q
    ||||||    
T  8243122 tcactc 8243127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 35087660 - 35087456
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  35087660 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 35087562  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  35087561 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatct 35087462  T
Q  201 tcactc 206  Q
    ||||||    
T  35087461 tcactc 35087456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 31368838 - 31368633
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  31368838 agttacaaaaaatacttaggcggtcaatagttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttttatctagagaagccacct 31368739  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||| |||| |||||||||||| ||||||||||| | |||||||    
T  31368738 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccacactttcaacatatcaccttaactttaatcctagactagattatct 31368639  T
Q  201 tcactc 206  Q
    ||||||    
T  31368638 tcactc 31368633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 50771069 - 50770865
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||| ||    
T  50771069 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccaact 50770971  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| | |||||||    
T  50770970 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcgtagactagattatct 50770871  T
Q  201 tcactc 206  Q
    ||||||    
T  50770870 tcactc 50770865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 52462753 - 52462549
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  52462753 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 52462655  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
     ||||||||||||||||||||||| |||||||||||||  || || |||||||| ||||| |||| ||||||||||||||||||||||||   |||||||    
T  52462654 taaaatatgcacgttcaagtcgttcccaaataaagattatgtgttcatgatccgtactttcaacatatcaccttaactctaatcctagactggattatct 52462555  T
Q  201 tcactc 206  Q
    ||||||    
T  52462554 tcactc 52462549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 50741805 - 50742009
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  50741805 agttacaaaaaatacttaggcggtcaatggttcaaattttgctgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacct 50741903  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||  || ||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||| | |||||||    
T  50741904 aaaaatatgcacgttcaagttttttccaaataaagatttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagactagattatct 50742003  T
Q  201 tcactc 206  Q
    ||||||    
T  50742004 tcactc 50742009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 48977116 - 48977303
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  48977116 agttacaaaaaatacttaggtggccaatggttcaaattttgtcgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 48977214  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctaga 189  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||    
T  48977215 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgtactttcaacagatcaccttaactataatcctaga 48977303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 6103949 - 6103744
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtagg-tgataagctaannnnnnnatctagagaagccacc 99  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||       ||||||||||||||||    
T  6103949 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtagggtgataagttaatttttt-atctagagaagccacc 6103851  T
Q  100 taaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatc 199  Q
    |||||||||||||||||||||  || ||||||||||||||||| || |||||||||||||| |||| | |||||||||| ||||||||||| | ||||||    
T  6103850 taaaaatatgcacgttcaagttctttccaaataaagatttggtgttcatgatccgcactttcaacataccaccttaactttaatcctagactagattatc 6103751  T
Q  200 ttcactc 206  Q
    |||||||    
T  6103750 ttcactc 6103744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 16342096 - 16342292
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||| |||       ||||||||||||||||||||||||    
T  16342096 aaaaatacttaggcggccaatggttcaaattt-gccgagaacagatgttagaggtaggtgataagttaatttttg-atctagagaagccacctaaaaata 16342193  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||| |||||  |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  16342194 tgcacgttcaaatcgttctcaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactc 16342292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 18742043 - 18741846
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    ||||||||||||| || ||||||||||| |||||| |||||||||| |||||||||||||||||| |||       |||||||||||||| |||||||||    
T  18742043 aaaaatacttaggtggccaatggttcaaattttgctgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccatctaaaaata 18741945  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| |||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||    
T  18741944 tgcacgttcaagtcgtttccaaatgaaggtttggtgttcatgatccgcacttttaacagatcaccttaactctaatcttagactagataatcttcactc 18741846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 21699409 - 21699205
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||| |||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  21699409 agttacaaaaaatatttaggcagccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 21699311  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||| ||||||||||||||||||| ||||||||||||||||| || || ||||||||||| | || |||||||||||||||||| ||||| | |||||||    
T  21699310 aaaagtatgcacgttcaagtcgtttccaaataaagatttggtgttcataatccgcactttcagcatatcaccttaactctaatcttagactagattatct 21699211  T
Q  201 tcactc 206  Q
    ||||||    
T  21699210 tcactc 21699205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 32755946 - 32756150
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||||||||| ||||       ||||||||||||||| |    
T  32755946 agttacaaaaaatacttaggcggccaatggttcaaattttaccgagaacatatgttagaggtaggtgataatctaatttttg-atctagagaagccacat 32756044  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||| |||| ||||| |||| |||||||||| || | |||||||    
T  32756045 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccacactttcaacatatcactttaattctaatcctatactagattatct 32756144  T
Q  201 tcactc 206  Q
    ||||||    
T  32756145 tcactc 32756150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 49113497 - 49113698
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||  |||       || |||||||| |||||    
T  49113497 agttacaaaaaatacttaggcggccaatgattcaaattttgccgagaacatatgttagaggtaggtgataaattaatttttg-atatagagaagtcacct 49113595  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||  |||| |||||||||||||||||||||||| | |||||||    
T  49113596 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccacacttgcaacaaatcaccttaactctaatcctagactagattatct 49113695  T
Q  201 tca 203  Q
    |||    
T  49113696 tca 49113698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 54934238 - 54934442
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||| |||||||||||       | |||||||||||||||    
T  54934238 agttacgaaaaatacttaggcgaccaatggttcaacttttgccgagaacatatgttagaggtagatgataagctaatttttg-acctagagaagccacct 54934336  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || ||||||||||||||||| || |||||  ||||||| |||| || ||||||| ||||||| || || | |||||||    
T  54934337 aaaaatatgcacgttcaagtcattcccaaataaagatttggtgttcatgatatgcactttcaacatattaccttaattctaatcatatactagattatct 54934436  T
Q  201 tcactc 206  Q
    ||||||    
T  54934437 tcactc 54934442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 54513215 - 54513421
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||| | ||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  54513215 agttacaaaaaatacttaggcggccaatgat-caaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 54513312  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagac---aatatta 197  Q
    ||||||||||||||||||||||||  ||| ||||||||| || || |||||||||||||| |||| ||||||||||||||||||||||||   | |||||    
T  54513313 aaaaatatgcacgttcaagtcgttctcaattaaagatttcgtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattatta 54513412  T
Q  198 tcttcactc 206  Q
    |||||||||    
T  54513413 tcttcactc 54513421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 52853266 - 52853087
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||| ||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||  |||       ||||||||||| || ||    
T  52853266 agttacaaaaaatagttaggcgatcaatggttcaaattttgccgagaacatatgttagaagtaggtgataaattaatttttg-atctagagaagtcatct 52853168  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactcta 181  Q
    |||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||    
T  52853167 aaaaatatgcacgttcaagtcgtttctaaataaagatttggtgttcatgatccgcactttcaacagattaccttaactcta 52853087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 51248818 - 51248940
Alignment:
Q  84 atctagagaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaat 183  Q
    ||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  51248818 atctagagaagtcacctaaaaataagcatgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaat 51248917  T
Q  184 cctagacaatattatcttcactc 206  Q
    ||||||| | |||||||||||||    
T  51248918 cctagactagattatcttcactc 51248940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 23194712 - 23194825
Alignment:
Q  93 agccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaa 192  Q
    ||||||||||||||||| ||| |||||||||| ||||||||| ||||||| || |||||||||||||| |||||||||||||| |||||||||||||  |    
T  23194712 agccacctaaaaatatgtacgatcaagtcgttcccaaataaatatttggtgttcatgatccgcactttcaacagatcaccttatctctaatcctagatta 23194811  T
Q  193 tattatcttcactc 206  Q
     |||||||||||||    
T  23194812 gattatcttcactc 23194825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 50802877 - 50802818
Alignment:
Q  147 atgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||| ||||| |||| |||||||||||||||||| ||||  | |||||||||||||    
T  50802877 atgatccgtactttcaacaaatcaccttaactctaatcttagattagattatcttcactc 50802818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 50873000 - 50873059
Alignment:
Q  147 atgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||| ||||| |||| |||||||||||||||||| ||||  | |||||||||||||    
T  50873000 atgatccgtactttcaacaaatcaccttaactctaatcttagattagattatcttcactc 50873059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 2843583 - 2843541
Alignment:
Q  164 cagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||||||||||||| | ||| |||||||||    
T  2843583 cagatcaccttaactctaatcctagactagattgtcttcactc 2843541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 23937032 - 23937072
Alignment:
Q  92 aagccacctaaaaatatgcacgttcaagtcgttaccaaata 132  Q
    |||||||||||||| |||||||||||||| ||| |||||||    
T  23937032 aagccacctaaaaacatgcacgttcaagttgttcccaaata 23937072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 33638500 - 33638296
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  33638500 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttt-atctagagaagccacct 33638402  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  33638401 aaaaatatgcacgttcaagtcgtttccaaataaaaatttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagacaagattatct 33638302  T
Q  201 tcactc 206  Q
    ||||||    
T  33638301 tcactc 33638296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 23299548 - 23299345
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  23299548 agttacgaaaaatactttggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaattttg--atctagagaagccacct 23299451  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||| ||||||||| || ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  23299450 aaaaatatgcatgttcaagtcattcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagacaagattatct 23299351  T
Q  201 tcactc 206  Q
    ||||||    
T  23299350 tcactc 23299345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 27734874 - 27734671
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||       |||||||||||||||||    
T  27734874 agttacgaaaaatacttaggcggtcaacggttcaacttttgccgagaacatatgttagaggtaggtgata-gctaatttttg-atctagagaagccacct 27734777  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||| |||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  27734776 aaaaatatgcatgttcaaatcgttcccaaataaagatttggtattcatgatccgcactttcaacagatcaccttaactctaatcctagacaagattatct 27734677  T
Q  201 tcactc 206  Q
    ||||||    
T  27734676 tcactc 27734671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 42918307 - 42918504
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||       ||||||||||||||||||||||||    
T  42918307 aaaaatacttaggcggtcaatggttcaacttttgctgagaacatatgttagaggtaggtgaaaagctaatttttg-atctagagaagccacctaaaaata 42918405  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||  ||||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  42918406 tgcacgttcaagtcgttcccaaataaagatttggtgttcatgatgtgcactttcaacagaccaccttaactctaatcctagacaagattatcttcactc 42918504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 17478357 - 17478554
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||       ||||||||||||||||||||||||    
T  17478357 aaaaatacttaggcggtcaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacctaaaaata 17478455  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| | |||| ||||||||||||||||| | |||||||||||||    
T  17478456 tgcacgttcaagtcgttcccaaataaagatttggtattcatgatccgcactttcaacaaaacaccataactctaatcctagactagattatcttcactc 17478554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 17574857 - 17574660
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||       ||||||||||||||||||||||||    
T  17574857 aaaaatacttaggcggtcaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacctaaaaata 17574759  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| | |||| ||||||||||||||||| | |||||||||||||    
T  17574758 tgcacgttcaagtcgttcccaaataaagatttggtattcatgatccgcactttcaacaaaacaccataactctaatcctagactagattatcttcactc 17574660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 17482792 - 17482989
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||| |||||||||||    
T  17482792 aaaaatacttaggcggtcaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagctacctaaaaata 17482890  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| | |||| ||||||||||||||||| | |||||||||||||    
T  17482891 tgcacgttcaagtcgttcccaaataaagatttggtattcatgatccgcactttcaacaaaacaccataactctaatcctagactagattatcttcactc 17482989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 17570422 - 17570225
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||| |||||||||||    
T  17570422 aaaaatacttaggcggtcaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagctacctaaaaata 17570324  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| | |||| ||||||||||||||||| | |||||||||||||    
T  17570323 tgcacgttcaagtcgttcccaaataaagatttggtattcatgatccgcactttcaacaaaacaccataactctaatcctagactagattatcttcactc 17570225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 8925736 - 8925532
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  8925736 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacct 8925638  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||| |||| |||||||||||| ||||||||||| | |||| ||    
T  8925637 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccacactttcaacatatcaccttaactttaatcctagactagattagct 8925538  T
Q  201 tcactc 206  Q
    ||||||    
T  8925537 tcactc 8925532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 14309290 - 14309495
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |||       || ||||||||||||||    
T  14309290 agttacaaaaaatacttaggcagtcaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttttatgtagagaagccacct 14309389  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||| || || |||||||||||||| || || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  14309390 aaaaatatgcacgttcaattcctttccaaataaagatttagtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 14309489  T
Q  201 tcactc 206  Q
    ||||||    
T  14309490 tcactc 14309495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 17470168 - 17470372
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||  || |||||||| |||||||| | ||||||| |||       |||||||||||||||||    
T  17470168 agttacaaaaaatacttaggcggccaatggttcaaattttatcgtgaacatatgttagaggtggatgataagttaatttttg-atctagagaagccacct 17470266  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| | |||||||    
T  17470267 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtcttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatct 17470366  T
Q  201 tcactc 206  Q
    ||||||    
T  17470367 tcactc 17470372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 17583046 - 17582842
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||  || |||||||| |||||||| | ||||||| |||       |||||||||||||||||    
T  17583046 agttacaaaaaatacttaggcggccaatggttcaaattttatcgtgaacatatgttagaggtggatgataagttaatttttg-atctagagaagccacct 17582948  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| | |||||||    
T  17582947 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtcttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatct 17582848  T
Q  201 tcactc 206  Q
    ||||||    
T  17582847 tcactc 17582842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 47174900 - 47175103
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||||       |||||||||||||||||    
T  47174900 agttaagaaaaatacttaggcggccaatggttcaacttttgcagagaacatatgttagaggtaggtgataaactaatttttg-atctagagaagccacct 47174998  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||| ||||||| | ||| ||||| ||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||| | |||||||    
T  47174999 aaaattatgcacat-caaatcgttcccaaataaagatttggtgttcatgatctgcactttcaacagatcaccttaactctaatcctagactagattatct 47175097  T
Q  201 tcactc 206  Q
    ||||||    
T  47175098 tcactc 47175103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5963133 - 5963336
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  5963133 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 5963231  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgca-cttttaacagatcaccttaactctaatcctagacaatattatc 199  Q
    |||||||||||||||||||| ||| |||||||||||||| || || |||||||||| |||| |||| ||||||||||||||||||||| || | ||||||    
T  5963232 aaaaatatgcacgttcaagttgtttccaaataaagatttagtgttcatgatccgcacctttcaacatatcaccttaactctaatcctatactagattatc 5963331  T
Q  200 ttcac 204  Q
    |||||    
T  5963332 ttcac 5963336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 42687989 - 42688195
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccac-- 98  Q
    |||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| |||       |||||||||||||||      
T  42687989 agttacaaaaaatacttaggcggccaatggttcaaattttgtcgagaacatatgttagaggtaggtgataagttaattttta-atctagagaagccacac 42688087  T
Q  99 ctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattat 198  Q
    ||||||||| ||||||||||||||||  |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| || | |||||    
T  42688088 ctaaaaataagcacgttcaagtcgtttacaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctaaactagattat 42688187  T
Q  199 cttcactc 206  Q
    ||||||||    
T  42688188 cttcactc 42688195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42827183 - 42826979
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||| ||||||| ||||||||||||||||||||||       | |||||||||||||||    
T  42827183 agttacgaaaaatacttaggcggccaacggtttaacttttgccgataacatatgttagaggtaggtgataagctaatttttt-acctagagaagccacct 42827085  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||| || ||  |||||||||| ||||| || |||||||||||||| ||||||||||||||| |||||||||| || | |||||||    
T  42827084 aaaaatatgcacgttcaaatcattctcaaataaagacttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatct 42826985  T
Q  201 tcactc 206  Q
    ||||||    
T  42826984 tcactc 42826979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 11500303 - 11500500
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    ||||||||||||||||  |||||||||| ||||||||||||| ||| ||||||||| |||||||| |||       ||||||||||||||||||||||||    
T  11500303 aaaaatacttaggcggctaatggttcaaattttgccgagaacttatgttagaggtaagtgataagttaatttttg-atctagagaagccacctaaaaata 11500401  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||| ||||| ||||||||||||||||| || |||||||||| ||| || |||||| ||||||||||||||||||| | |||||||||||||    
T  11500402 tgcacgttcaaatcgtttccaaataaagatttggtgttcatgatccgcattttcaatagatcaacttaactctaatcctagactagattatcttcactc 11500500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 19521588 - 19521790
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| || |||||||| ||||||||||||||||| |||||||||| ||||||| |||       ||||||| |||||||||    
T  19521588 agttacaaaaaatacttaggcggcca-tggttcaaattttgccgagaacatatgttagaggtag-tgataagttaatttttg-atctagataagccacct 19521684  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| ||| |||||||||||||||||| |||||| | |||||||    
T  19521685 aaaaatatgcacgttcaagtcgtttccaaataaaaatttggtgttcatgatccgcactttcaacggatcaccttaactctaattctagactagattatct 19521784  T
Q  201 tcactc 206  Q
    ||||||    
T  19521785 tcactc 19521790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 23766265 - 23766061
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||| || ||||||||||| ||||| ||||||||| | ||||| |||||||||||| |||       |||||||||||||||||    
T  23766265 agttacaaaaaatacttaggtggccaatggttcaaattttgacgagaacatgtgttagatgtaggtgataagttaatttttt-atctagagaagccacct 23766167  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||| |||||  ||||||||||| | |||||||    
T  23766166 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcactttaacattaatcctagactagattatct 23766067  T
Q  201 tcactc 206  Q
    ||||||    
T  23766066 tcactc 23766061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 33031297 - 33031479
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||       || |||| |||||||||    
T  33031297 agttacaaaaaaaacttaggcggtcaatgattcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atttagataagccacct 33031395  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatc 184  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||| |||| ||||||||||||||||||    
T  33031396 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatctgcactttcaacatatcaccttaactctaatc 33031479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 9149815 - 9149965
Alignment:
Q  55 ttagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccg 154  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |    
T  9149815 ttagaggtaggtgataagctaatttttt-atctagagaagccacctaaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatctg 9149913  T
Q  155 cacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||| |||| | |||||||| ||||||||||||||| |||||||||||||    
T  9149914 cactttcaacataccaccttaattctaatcctagacaagattatcttcactc 9149965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 41262182 - 41262001
Alignment:
Q  19 ggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaatatgcacgttcaa 118  Q
    ||||| ||||||||||| ||||||| || |||||| |||||||||||||||||| |||       |||     |||||||||||||||||||| ||||||    
T  41262182 ggcggccaatggttcaaattttgcctagtacatatgttagaggtaggtgataagttaatttttt-atc-----aagccacctaaaaatatgcatgttcaa 41262089  T
Q  119 gtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||| | ||||||||||||| | |||||||||| |||||| |||||||||| |||||||||||||||||| | |||||||||||||    
T  41262088 gtcgtttctaaataaagatttgatgtttatgatccacactttcaacagatcactttaactctaatcctagactagattatcttcactc 41262001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 33321283 - 33321079
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  33321283 agttacgaaaaatatttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 33321185  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||||| |||||||    
T  33321184 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacaaatcaccttaactttaatcctagacaagattatct 33321085  T
Q  201 tcactc 206  Q
    ||||||    
T  33321084 tcactc 33321079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34321512 - 34321716
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| || ||||       |||||||||||||||||    
T  34321512 agttacgaaaaatacttaggcggccaatggttcaacttttgctgagaacatatgttagaggtaggtgaaaaactaatttttc-atctagagaagccacct 34321610  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  34321611 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagaaaaaattatct 34321710  T
Q  201 tcactc 206  Q
    ||||||    
T  34321711 tcactc 34321716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 18598816 - 18598611
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  18598816 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttttatctagagaagccacct 18598717  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  18598716 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 18598617  T
Q  201 tcactc 206  Q
    ||||||    
T  18598616 tcactc 18598611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 17939944 - 17940141
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||       ||||||||||||||||||||||||    
T  17939944 aaaaatacttatgcggtcaatggtttaaattttgccgagaacatatgttagaggtaggtgataagttaagttttg-atctagagaagccacctaaaaata 17940042  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  17940043 tgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactc 17940141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 1073093 - 1072889
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  1073093 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacct 1072995  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  1072994 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 1072895  T
Q  201 tcactc 206  Q
    ||||||    
T  1072894 tcactc 1072889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34856369 - 34856573
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |||       |||||||||||||||||    
T  34856369 agttacaaaaaatacttaggcggtcaatggttcaaattttgccgagaacatgtgttagaggtaggtgataagttaatttttt-atctagagaagccacct 34856467  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  34856468 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 34856567  T
Q  201 tcactc 206  Q
    ||||||    
T  34856568 tcactc 34856573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2521582 - 2521786
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  2521582 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacct 2521680  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
     ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||  ||||||||||| ||||||||||| | |||||||    
T  2521681 taaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatgtcaccttaactttaatcctagactagattatct 2521780  T
Q  201 tcactc 206  Q
    ||||||    
T  2521781 tcactc 2521786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 14887768 - 14887564
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| |||       |||||||||||||||||    
T  14887768 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatgtgttagaggtaggtgataagttaatttttt-atctagagaagccacct 14887670  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||| |||| |||||||||||| ||||||||||| | |||||||    
T  14887669 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatcctcactttcaacatatcaccttaactttaatcctagactagattatct 14887570  T
Q  201 tcactc 206  Q
    ||||||    
T  14887569 tcactc 14887564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 15276053 - 15276241
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  15276053 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 15276151  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagac 190  Q
    |||||||||||||||||||||||| |||| |||||||||||| || |||||||||||||| |||| ||||||||||||||||||||||||    
T  15276152 aaaaatatgcacgttcaagtcgttcccaactaaagatttggtgttcatgatccgcactttcaacacatcaccttaactctaatcctagac 15276241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 35041505 - 35041708
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||| || ||||||||||| ||||| || |||||||| |||||||| ||||||||| |||       |||||||||||||||||    
T  35041505 agttacaaaaaatacttaggtggccaatggttcaaattttgtcgtgaacatatgttagaggtgggtgataagttaatttttg-atctagagaagccacct 35041603  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||| | |||||||    
T  35041604 aaaaatatgcacgttcaaatcgtttccaaataaagatttggtgttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatct 35041703  T
Q  201 tcact 205  Q
    |||||    
T  35041704 tcact 35041708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 7222727 - 7222932
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||  |||       |||||||||||||||||    
T  7222727 agttacaaaaaatacttaggcggtcaatggttcaaattttgccgagaacatatgttataggtaagtgataaattaatttttg-atctagagaagccacct 7222825  T
Q  101 aaaa-atatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatc 199  Q
    |||| |||||||| ||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||| |||||||||||||||||| | ||||||    
T  7222826 aaaaaatatgcacattcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcactttaactctaatcctagactagattatc 7222925  T
Q  200 ttcactc 206  Q
    |||||||    
T  7222926 ttcactc 7222932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 18312208 - 18312411
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||| ||||||||||||| ||||| ||| ||||||| |||||||||||||||||  |||       |||||||||||||||||    
T  18312208 agttacaaaaaatacttaggcagtcaatggttcaaattttgtcgataacatatgttagaggtaggtgataaattaatttttg-atctagagaagccacct 18312306  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||| |||||||||||| ||||||||||||||||| || ||||| |||||||| ||||||||||||||| ||||||| ||||| | |||||||    
T  18312307 aaaaatatgcatgttcaagtcgtttccaaataaagatttggtgttcatgattcgcactttcaacagatcaccttaa-tctaatcgtagactagattatct 18312405  T
Q  201 tcactc 206  Q
    ||||||    
T  18312406 tcactc 18312411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 4424902 - 4425105
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||  ||||||| ||| |||||| |||||||||| | |||||||||||||||| |||       ||||||||||| |||||    
T  4424902 agttacaaaaaatacttaggcgaccaatggtacaaattttgctgagaacatatgtaagaggtaggtgataagttaatttttg-atctagagaaggcacct 4425000  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    | |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||  ||||| | |||||||    
T  4425001 agaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactctaattgtagactagattatct 4425100  T
Q  201 tcact 205  Q
    |||||    
T  4425101 tcact 4425105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 11933230 - 11933108
Alignment:
Q  84 atctagagaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaat 183  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  11933230 atctagagaagccacctaaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaat 11933131  T
Q  184 cctagacaatattatcttcactc 206  Q
    ||||||| | |||||||||||||    
T  11933130 cctagactagattatcttcactc 11933108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 30044632 - 30044829
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct-aaaaat 106  Q
    |||||||||||||||| |||||||| || ||| ||||||||||||| |||||||||||||||||| |||       ||||||||||||||||  ||||||    
T  30044632 aaaaatacttaggcggccaatggtttaaattt-gccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccaccggaaaaat 30044729  T
Q  107 atgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||| |||||| | ||||| |||||||    
T  30044730 atgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactctaattctagactagattatattcactc 30044829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 22373665 - 22373469
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    ||||||||||| |||| ||||||||||| ||||| |||||| |||| |||||||||||||||||| |||       || |||||||||||||||||||||    
T  22373665 aaaaatacttaagcggccaatggttcaaattttgtcgagaa-atatgttagaggtaggtgataagttaatttttg-atttagagaagccacctaaaaata 22373568  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||| ||| || ||||||||||||||||| || |||||| ||||||| ||||||||||||||||| ||||||||||| | |||||||||||||    
T  22373567 tgcacgttcaggtcattcccaaataaagatttggtgttcatgatctgcactttcaacagatcaccttaactttaatcctagactagattatcttcactc 22373469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 33814490 - 33814612
Alignment:
Q  84 atctagagaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaat 183  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  33814490 atctagagaagacacctaaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaat 33814589  T
Q  184 cctagacaatattatcttcactc 206  Q
    ||||||| | |||||||||||||    
T  33814590 cctagactagattatcttcactc 33814612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 21799967 - 21800162
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| |||||||| || ||||| ||| ||||| |||||||||||||||||||| |||       ||||||||||| ||| ||||||||    
T  21799967 aaaaatacttaggcggccaatggtttaaattttgacgaaaacatgtattagaggtaggtgataagttaatttttt-atctagagaagtcacataaaaata 21800065  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||||||  |||||||||||||||  || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||||||||    
T  21800066 tgcacgttcaagtcgttttcaaataaagatttgg--ttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactc 21800162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 14831934 - 14832061
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  14831934 agttacgaaaaatacttaggcggtcaatggttcaacttttgtcaagaacatatgttagaggtaggtgataagctaa-tttttgatctagagaagccacct 14832032  T
Q  101 aaaaatatgcacgttcaagtcgttaccaa 129  Q
    |||||||||| ||||||||||||| ||||    
T  14832033 aaaaatatgcgcgttcaagtcgttcccaa 14832061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 25540450 - 25540553
Alignment:
Q  103 aaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttc 202  Q
    |||||||||||||||||||||| ||||||||||||||||| || ||||||  |||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  25540450 aaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatctacactttcaacagatcaccttaattctaatcctagacaagattatcttc 25540549  T
Q  203 actc 206  Q
    ||||    
T  25540550 actc 25540553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 14832060 - 14832104
Alignment:
Q  162 aacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  14832060 aacagatcatcttaactctaatcctagacaagattatcttcactc 14832104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 22976172 - 22976118
Alignment:
Q  22 ggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaa 76  Q
    |||||||||||||||||||||||||||| | | ||||||||||||| ||| ||||    
T  22976172 ggtcaatggttcaacttttgccgagaacgtgtgttagaggtaggtggtaaactaa 22976118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 23812229 - 23812283
Alignment:
Q  22 ggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaa 76  Q
    |||||||||||||||||||||||||||| | | ||||||||||||| ||| ||||    
T  23812229 ggtcaatggttcaacttttgccgagaacgtgtgttagaggtaggtggtaaactaa 23812283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 2625280 - 2625220
Alignment:
Q  7 gaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtg 67  Q
    ||||| ||||| || |||||||||||||||||||  ||||||| | | |||||||||||||    
T  2625280 gaaaactacttgggtggtcaatggttcaacttttttcgagaacgtgtgttagaggtaggtg 2625220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 380 - 584
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  380 agttacgaaaaatacttaggcggtcaatggttcaacttttaccgagaacatatgttagaggtaggtgataagctaatttttt-atctagagaagccacct 478  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||| ||||||||||| || ||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  479 aaaaatatgtacgttcaagtctttcccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagacaagattatct 578  T
Q  201 tcactc 206  Q
    ||||||    
T  579 tcactc 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 3751291 - 3751495
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  3751291 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 3751389  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||| || ||||| ||||||||||||||||| || ||||||| |||||| |||| |||||||||||||||||||||||||| |||||||    
T  3751390 aaaaatatgcacgtttaattcgttcccaaataaagatttggtgttcatgatccacactttcaacatatcaccttaactctaatcctagacaagattatct 3751489  T
Q  201 tcactc 206  Q
    ||||||    
T  3751490 tcactc 3751495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 44382610 - 44382406
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||       ||||| |||||||||||    
T  44382610 agttacgaaaaatacctaggcggtcaatggttcaacttttgccaagaacatatgttagaggtaggtgataagctaatttttg-atctatagaagccacct 44382512  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |    
T  44382511 aaaaatatgcacgttcaagtcgttactaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagacaagattatat 44382412  T
Q  201 tcactc 206  Q
    ||||||    
T  44382411 tcactc 44382406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9761445 - 9761649
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  9761445 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 9761543  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| || |||||||||||||||||||| ||||| | |||||||    
T  9761544 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaatagatcaccttaactctaatcgtagactagattatct 9761643  T
Q  201 tcactc 206  Q
    ||||||    
T  9761644 tcactc 9761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 41977676 - 41977880
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  41977676 agttacgaaaaatacttaggcggtcaatggttcaacttttgctgagaacatatgttagaggtaggtgataagctaatttttt-atctagagaagccacct 41977774  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||| |||||| || ||||||||||||||||| || |||||||||| ||| |||||| ||||||||||||||||||||| || |||||||    
T  41977775 aaaaatatgcacgtacaagtcattcccaaataaagatttggtgttcatgatccgcattttcaacagaccaccttaactctaatcctagagaagattatct 41977874  T
Q  201 tcactc 206  Q
     |||||    
T  41977875 ccactc 41977880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 6477301 - 6477099
Alignment:
Q  3 ttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaa 102  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||||    
T  6477301 ttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacctaa 6477203  T
Q  103 aaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttc 202  Q
    |||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||  | |||||||||    
T  6477202 aaatatgcacgttcaagtcgtttccaaacaaagatttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagattagattatcttc 6477103  T
Q  203 actc 206  Q
    ||||    
T  6477102 actc 6477099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 45293382 - 45293177
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||| ||||| |       |||||||||||||||||    
T  45293382 agttacgaaaaatacttaggcggccaatggttcaacttttgctgagagcatatgttagaggtaggtgaaaagctcatttttg-atctagagaagccacct 45293284  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaa-ctctaatcctagacaatattatc 199  Q
    ||||||||||||||||||||||||  |||||||||||||||| || |||||||||||||| || |||||||||||| |||||||||||||||| ||||||    
T  45293283 aaaaatatgcacgttcaagtcgttctcaaataaagatttggtgttcatgatccgcactttcaatagatcaccttaatctctaatcctagacaagattatc 45293184  T
Q  200 ttcactc 206  Q
    |||||||    
T  45293183 ttcactc 45293177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 33424067 - 33423865
Alignment:
Q  3 ttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaa 102  Q
    |||| |||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||||    
T  33424067 ttacaaaaaatacttaggcagccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacctaa 33423969  T
Q  103 aaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttc 202  Q
    ||||||||| |||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||||    
T  33423968 aaatatgcatgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttc 33423869  T
Q  203 actc 206  Q
    ||||    
T  33423868 actc 33423865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 19248299 - 19248496
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| || ||||       ||| |||||| |||||||||||||    
T  19248299 aaaaatacttaggcggccaatggttcaacttttgctgagaacatatgttagaggtaggtgagaaactaatttttg-atcaagagaaaccacctaaaaata 19248397  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  19248398 tgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccacactttcaacagatcaccttaactctaatcctagacgagattatcttcactc 19248496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 19321483 - 19321680
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| || ||||       ||| |||||| |||||||||||||    
T  19321483 aaaaatacttaggcggccaatggttcaacttttgctgagaacatatgttagaggtaggtgagaaactaatttttg-atcaagagaaaccacctaaaaata 19321581  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  19321582 tgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccacactttcaacagatcaccttaactctaatcctagacgagattatcttcactc 19321680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 14078640 - 14078436
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| |||       |||||||||||||||||    
T  14078640 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatgtgttagaggtaggtgataagttaatttttt-atctagagaagccacct 14078542  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  14078541 aaaaatatgtacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 14078442  T
Q  201 tcactc 206  Q
    | ||||    
T  14078441 ttactc 14078436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 38962346 - 38962550
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||| || ||||||||||| ||||||||||||||||| ||| |||||||||||||| |||       ||||||||||| |||||    
T  38962346 agttacaaaaaatacttaggtggccaatggttcaaattttgccgagaacatatgttaaaggtaggtgataagttaatttttg-atctagagaagtcacct 38962444  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | |||| ||    
T  38962445 aaaaatatgcacgttcaagtcatttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattacct 38962544  T
Q  201 tcactc 206  Q
    ||||||    
T  38962545 tcactc 38962550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 38992690 - 38992894
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||| || ||||||||||| ||||||||||||||||| ||| |||||||||||||| |||       ||||||||||| |||||    
T  38992690 agttacaaaaaatacttaggtggccaatggttcaaattttgccgagaacatatgttaaaggtaggtgataagttaatttttg-atctagagaagtcacct 38992788  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | |||| ||    
T  38992789 aaaaatatgcacgttcaagtcatttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattacct 38992888  T
Q  201 tcactc 206  Q
    ||||||    
T  38992889 tcactc 38992894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42810743 - 42810539
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||| | ||||||||||| |||       |||||||||||||||||    
T  42810743 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagggttaggtgataagttaattttta-atctagagaagccacct 42810645  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||| ||||||||||| ||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||||     
T  42810644 aaaaatatgcacattcaagtcgtttccaaataaatatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcc 42810545  T
Q  201 tcactc 206  Q
    ||||||    
T  42810544 tcactc 42810539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 22332530 - 22332336
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||| | |||||||| || ||||| ||||||||||| ||||||||| |||||||| |||       ||||||||||||||||||||||||    
T  22332530 aaaaatacttaggcagacaatggtttaaattttgtcgagaacatatgttagaggtatgtgataagttaatttttg-atctagagaagccacctaaaaata 22332432  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttca 203  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||    
T  22332431 tgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattatcttca 22332336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 38993869 - 38994065
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||| |||       |||||||||| |||||||||||||    
T  38993869 aaaaatacttaggcggccaatggttcaaattt-gccgagaacagatgttagaggtaggtgataagttaatttttg-atctagagaaaccacctaaaaata 38993966  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  38993967 tgcacgttcaaatcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactc 38994065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 44599886 - 44600082
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||| |||       |||||||||| |||||||||||||    
T  44599886 aaaaatacttaggcggccaatggttcaaattt-gccgagaacagatgttagaggtaggtgataagttaatttttg-atctagagaaaccacctaaaaata 44599983  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  44599984 tgcacgttcaaatcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactc 44600082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 19395372 - 19395168
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||| |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||  |||       |||||||||||||||||    
T  19395372 agttacaaaaaatatttaggcggccaatggttcaaatttcgccgagaacatatgttagaggtaggtgataaattaatttttg-atctagagaagccacct 19395274  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||  |||||||||||||||||||| |||   |||||||    
T  19395273 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaaccaatcaccttaactctaatccttgactcgattatct 19395174  T
Q  201 tcactc 206  Q
    ||||||    
T  19395173 tcactc 19395168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 36597845 - 36597641
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| |||       |||||||||||||||||    
T  36597845 agttacaaaaaatacttaggcgggcaatggttcaaattttgccgagaacatatgttagaggtaagtgataagttaatttttg-atctagagaagccacct 36597747  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||| |||| |||||||||||||  || || |||||||||||||| |||||| ||||||||||||||||| | || | |||||||    
T  36597746 aaaaatatgcacgttcaaggcgtttccaaataaagattgagtgttcatgatccgcactttcaacagagcaccttaactctaatcccatactagattatct 36597647  T
Q  201 tcactc 206  Q
    ||||||    
T  36597646 tcactc 36597641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 23522467 - 23522266
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||||||  |||||||||| ||||| ||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  23522467 agttacaaaaaatacttaggcggaaaatggttcaaattttgacgagaacatatgttagaggtaggtgataagttaattttta-atctagagaagccacct 23522369  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||   | ||||||||||| ||||| || ||||| |||||||| ||||||||||||||||||||||||||||| | |||||||    
T  23522368 aaaaatatgcacgttcaagt---ttccaaataaagaattggtgttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatct 23522272  T
Q  201 tcactc 206  Q
    ||||||    
T  23522271 tcactc 23522266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 27273410 - 27273613
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||| |||||||||| |||||||| || |||| | |||||||||| |||||||||||||||||| |||       ||||||||||||||| |    
T  27273410 agttacaaaaaaaacttaggcggccaatggtttaaatttttc-gagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacat 27273507  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||| | |||||||    
T  27273508 aaaaatatgcacgttcaattcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaattctagactagattatct 27273607  T
Q  201 tcactc 206  Q
    ||||||    
T  27273608 tcactc 27273613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 22946606 - 22946406
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||        | |||||||||||||     
T  22946606 agttacgaaaaatacttaggcggccaatggttcaacttttgccgagaacatat----gaggtaggtgataagctaatttttgact-tagagaagccacca 22946512  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || ||||||||||||||||| || ||||||||||| || |||| |||||||||| ||||||| || || | |||||||    
T  22946511 aaaaatatgcacgttcaagtcattcccaaataaagatttggtattcatgatccgcacgttcaacatatcaccttaattctaatcatatactagattatct 22946412  T
Q  201 tcactc 206  Q
    ||||||    
T  22946411 tcactc 22946406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 41629073 - 41629270
Alignment:
Q  9 aaaatacttaggcggtcaatggttcaacttttgccga-gaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    ||||||||||||||| |||||||||||  |||||||| ||| |||| |||||||||||||||||| |||       ||||||||||||||| ||||| ||    
T  41629073 aaaatacttaggcggccaatggttcaaactttgccgaagaatatatgttagaggtaggtgataagttaatttttg-atctagagaagccacataaaagta 41629171  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    || | |||||||||||| |||||||||||| |  | || |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  41629172 tggatgttcaagtcgtttccaaataaagatctaatgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactc 41629270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 5835816 - 5835977
Alignment:
Q  44 gagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtc 143  Q
    |||||||||| |||||||||||||||||  |||       ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||     
T  5835816 gagaacatatgttagaggtaggtgataaattaatttttg-atctagagaagccacctaaaaatatgcacgttcaagtcgtttctaaataaagatttggtg 5835914  T
Q  144 tttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    || |||||||||||||| |||| |||||||||||||||||| ||||  | |||||||||||||    
T  5835915 ttcatgatccgcactttcaacatatcaccttaactctaatcatagatcagattatcttcactc 5835977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 41156817 - 41156935
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||| ||||||    
T  41156817 agttacgaaaaatacttaggcggtcaatgattcaacttttgccgagaacatatgttagaggtaggtgataagctaa-tttttgatctagagaaaccacct 41156915  T
Q  101 aaaaatatgcacgttcaagt 120  Q
    ||||||||||||||||||||    
T  41156916 aaaaatatgcacgttcaagt 41156935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 42785443 - 42785550
Alignment:
Q  99 ctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattat 198  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| || |||||||||||||| ||||||||||| | |||||    
T  42785443 ctaaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaatagatcaccttaactttaatcctagactagattat 42785542  T
Q  199 cttcactc 206  Q
    ||||||||    
T  42785543 cttcactc 42785550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 41533571 - 41533473
Alignment:
Q  100 taaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattat 198  Q
    ||||||||||||||||||||| ||| ||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  41533571 taaaaatatgcacgttcaagtagttcccaaataaatatttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagacaagattat 41533473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12760593 - 12760667
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaa 76  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12760593 agttacgaaaaatacttagg-ggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaa 12760667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30826632 - 30826702
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataa 71  Q
    |||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  30826632 agttacaaaaaatacttaggcggccaatgattcaaattttgccgagaacatatgttagaggtaggtgataa 30826702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 30826699 - 30826775
Alignment:
Q  130 ataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||| || |||||||||||||| |||| |||||||||||| |||||||| || | |||||||||||||    
T  30826699 ataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctatactagattatcttcactc 30826775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 18092544 - 18092340
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  18092544 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 18092446  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||| |||| || || ||||||| |||||| |||||||||||||||||||||||||||| || |||||||    
T  18092445 aaaaatatgcacgttcaagtcgttcccaaataaatatttagtgttcatgatccacactttcaacagatcaccttaactctaatcctagataagattatct 18092346  T
Q  201 tcactc 206  Q
    ||||||    
T  18092345 tcactc 18092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 1514809 - 1514605
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||       |||||||||||||||||    
T  1514809 agttatgaaaaatacttaggcggtcaatggttcaacttttgtcgagaacatatgttaaaggtaggtgataagctaatttttt-atctagagaagccacct 1514711  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |||| |||||||    
T  1514710 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccggactttcaacagatcaccttaactttaatcctaaacaaaattatct 1514611  T
Q  201 tcactc 206  Q
    ||||||    
T  1514610 tcactc 1514605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 26822088 - 26822292
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||| ||    
T  26822088 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccaact 26822186  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| | |||||||    
T  26822187 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcgtagactagattatct 26822286  T
Q  201 tcactc 206  Q
    ||||||    
T  26822287 tcactc 26822292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 36632866 - 36632670
Alignment:
Q  9 aaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaatat 108  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||       |||||||||||||||||||||||||    
T  36632866 aaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgacaagctaatttttg-atctagagaagccacctaaaaatat 36632768  T
Q  109 gcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  36632767 gcacgttcaagtcgtttccaaataaagatttggtgttcatgatcctcactttcaacagatcaccttaactctaatcctagactagattatcttcactc 36632670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 19126507 - 19126304
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  19126507 agttacaaaaaatacttaggcggccaatggttcaaattttgctgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 19126409  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||| ||||||||||||||||||| ||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  19126408 aaaa-tatgcacgttcaagtcgtttccaaataaagatttggtgttcacgatccgcactttcaacagatcaccttaactctaatcctagacaagattatct 19126310  T
Q  201 tcactc 206  Q
    ||||||    
T  19126309 tcactc 19126304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 45399255 - 45399459
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||     
T  45399255 agttacgaaaaatacgtaggtggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaatttttg-acctagagaagccaccc 45399353  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || |||||||||||||| || || |||||||||||||| ||||||||||||||| |||||||||| || | |||||||    
T  45399354 aaaaatatgcacgttcaagtcattcccaaataaagattttgtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatct 45399453  T
Q  201 tcactc 206  Q
    ||||||    
T  45399454 tcactc 45399459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 21098158 - 21098361
Alignment:
Q  2 gttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccaccta 101  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||  |||       ||||||||||||||||||    
T  21098158 gttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataaattaatttttt-atctagagaagccaccta 21098256  T
Q  102 aaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatctt 201  Q
    ||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||| |||| ||||| |||||| ||||||||||| | ||||||||    
T  21098257 aaaatatgcacgttcaagtcgtttctaaataaagatttggtgttcatgatccgcactttcaacatatcacattaactttaatcctagactagattatctt 21098356  T
Q  202 cactc 206  Q
    |||||    
T  21098357 cactc 21098361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 26827975 - 26828171
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||| | |       ||||||||||||||||||||||||    
T  26827975 aaaaatacttaggcggccaatggttcaaattt-gccgagaacagatgttagaggtaggtgataagtttatttttg-atctagagaagccacctaaaaata 26828072  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  26828073 tgcacgttcaaatcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactaaattatattcactc 26828171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 33907707 - 33907903
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||| ||||| ||| |||||||||| || |||||||||||||||||| |||       ||||||||||||||||||||||||    
T  33907707 aaaaatacttaggcggccaatgattcaaattt-gccgagaacagatgttagaggtaggtgataagttaatttttg-atctagagaagccacctaaaaata 33907804  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  33907805 tgcacgttcaaatcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactc 33907903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30570372 - 30570168
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| |||| |||||| ||||||||| ||||||| ||| ||||| |||||||| |||       ||||||||||||||| |    
T  30570372 agttacaaaaaatacttaggcggccaatagttcaaattttgccgataacatatgttataggtatgtgataagttaatttttg-atctagagaagccacat 30570274  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  30570273 aaaaatatgcacgttcatgtcgtttccaaataaagatttggtgttcgtgatccgcactttcaacagatcaccttaactctaatcctagactagattatct 30570174  T
Q  201 tcactc 206  Q
    ||||||    
T  30570173 tcactc 30570168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 42885842 - 42886046
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||| ||||| ||||||||| ||||||| |||||||||| ||||||| |||       |||||||||||||||||    
T  42885842 agttacaaaaaatacttaggcggccaatgattcaaattttgccgataacatatgttagaggtagatgataagttaatttttg-atctagagaagccacct 42885940  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| | ||||||||||||||| || ||||| | |||||| ||||||||||||||||||||||||||||  | |||||||    
T  42885941 aaaaatatgcacgttcaagtcgtttctaaataaagatttggtgttaatgattcacactttcaacagatcaccttaactctaatcctagattagattatct 42886040  T
Q  201 tcactc 206  Q
    ||||||    
T  42886041 tcactc 42886046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 11448205 - 11448403
Alignment:
Q  7 gaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaat 106  Q
    |||||||| ||||| || || |||||||| || |||||||||||||| |||||||||||||||||| |||       ||||||| |||||||||||||||    
T  11448205 gaaaaatatttaggtgggcagtggttcaatttatgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagaaaagccacctaaaaat 11448303  T
Q  107 atgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||| ||||||| | |||||||||||||    
T  11448304 atgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccccactttcaacagatcaccttaactctaaccctagactagattatcttcactc 11448403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 11707090 - 11707286
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||| |||       |||||||||||||||||||| |||    
T  11707090 aaaaatacttaggcggccaatggttcaaattt-gccgagaacagatgttagaggtaggtgataagttaatttttg-atctagagaagccacctaaatata 11707187  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||| ||||| ||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  11707188 tgcacgttcaaatcgttcccaaataaagattcggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactc 11707286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 16724173 - 16723969
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||| ||||| ||||| ||||||||| | |||||| ||||||||||| |||       |||||||||||||||||    
T  16724173 agttacaaaaaatacttaggcggccaatgattcaaattttgacgagaacatgtgttagagataggtgataagttaatttttt-atctagagaagccacct 16724075  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| |||| |||||||||||  ||||||||||| | |||||||    
T  16724074 aaaaatatgcacgttcaagtcgtttccaaataaaaatttggtgttcatgatccgcactttcaacatatcaccttaacattaatcctagactagattatct 16723975  T
Q  201 tcactc 206  Q
    ||||||    
T  16723974 tcactc 16723969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 35286111 - 35285911
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||       | ||||||||||||||     
T  35286111 agttacgaaaaatacttaggcggccaatggttcaacttttgccgagaacatat----gaggtaggtgataagctaatttttg-acctagagaagccaccc 35286017  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || ||||||||||||||||| || ||||||||||| || |||| |||||||||| ||||||| || || | |||||||    
T  35286016 aaaaatatgcacgttcaagtcattcccaaataaagatttggtattcatgatccgcacgttcaacatatcaccttaattctaatcatatactagattatct 35285917  T
Q  201 tcactc 206  Q
    ||||||    
T  35285916 tcactc 35285911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 33663621 - 33663416
Alignment:
Q  1 agttacgaaaaatactta-ggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacc 99  Q
    |||||| ||||||||||| || || ||||| ||||| ||||||||||||||||| ||||||||| |||||||| |||       ||||||||||||||||    
T  33663621 agttacaaaaaatacttaaggtggccaatgattcaaattttgccgagaacatatgttagaggtatgtgataagttaatttttg-atctagagaagccacc 33663523  T
Q  100 taaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatc 199  Q
    |||||||||||| |||||||||||| ||||||||||||||||| || || ||||||||||| |||  |||||||||||||||||||||||| | ||||||    
T  33663522 taaaaatatgcatgttcaagtcgtttccaaataaagatttggtgttcataatccgcactttcaacgaatcaccttaactctaatcctagactagattatc 33663423  T
Q  200 ttcactc 206  Q
    |||||||    
T  33663422 ttcactc 33663416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 45204842 - 45204655
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| |||| |||||| |||||||||||| |||| ||||||| |||||  ||| |||       |||||||||||||||||    
T  45204842 agttacaaaaaatacttaggcggccaatagttcaaattttgccgagaa-atatgttagagggaggtggcaagttaatttttg-atctagagaagccacct 45204745  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagac 190  Q
    ||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||||||| ||||||||||||||    
T  45204744 aaaaatatgcacgatcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttatctctaatcctagac 45204655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 27364612 - 27364456
Alignment:
Q  49 catatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttat 148  Q
    ||||| ||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||    
T  27364612 catatgttagaggtaggtgataagctaatttttg-acctagagaagccacctaaaaatatgcacgttcaagtcattcccaaataaagatttggtgttcat 27364514  T
Q  149 gatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||| ||||||||||||||| |||||||||| || | |||||||||||||    
T  27364513 gatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactc 27364456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 19167657 - 19167478
Alignment:
Q  26 aatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaatatgcacgttcaagtcgtta 125  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||||| |||       |||||||||| |||||||||||||| || ||||||||||||     
T  19167657 aatggttcaaattttgtcgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaaaccacctaaaaatatacatgttcaagtcgttt 19167559  T
Q  126 ccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
     |||||||||||||||| || || ||||||||||| |||||||||||||||||||||| |||| | | |||||||||||||    
T  19167558 tcaaataaagatttggtgttcattatccgcactttcaacagatcaccttaactctaattctaggctagattatcttcactc 19167478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 5252901 - 5253006
Alignment:
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||||||||||||| ||||||||| | |||||||    
T  5252901 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgattcgcactttcaagagatcaccttaactctgatcctagactagattatct 5253000  T
Q  201 tcactc 206  Q
    ||||||    
T  5253001 tcactc 5253006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 4812015 - 4812136
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||||| | |||||||||||| |||||||||       | |||||||||||||||    
T  4812015 agttacgaaaattacttaggcggtcaatggtttaacttttgctgagaacatttgttagaggtaggttataagctaa-tttttgacctagagaagccacct 4812113  T
Q  101 aaaaatatgcacgttcaagtcgt 123  Q
    |||||||||||||||||||||||    
T  4812114 aaaaatatgcacgttcaagtcgt 4812136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 33706594 - 33706393
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  33706594 agttacaaaaaatacttaggcggtcaatgattcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttt-atctagagaagccacct 33706496  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  33706495 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgattcgcaatttcaacagatcaccttaactctaatcctagacaagattatct 33706396  T
Q  201 tca 203  Q
    |||    
T  33706395 tca 33706393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 21030508 - 21030712
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  21030508 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atctagagaagccacct 21030606  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  21030607 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatct 21030706  T
Q  201 tcactc 206  Q
    ||||||    
T  21030707 tcactc 21030712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 3029161 - 3029358
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       ||| ||||||||||||||||||||    
T  3029161 aaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttt-atcaagagaagccacctaaaaata 3029259  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||| |||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  3029260 tgcacgttcacgtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactc 3029358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 1851780 - 1851576
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  1851780 agttacaaaaaatacttaggtggccaatggttcaaattttgtcgagaacatattttagaggtaggtgataagttaatttttg-atctagagaagccacct 1851682  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||||||||| | |||||||    
T  1851681 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcattttcaacagatcaccttaactctaatcctagactacattatct 1851582  T
Q  201 tcactc 206  Q
    ||||||    
T  1851581 tcactc 1851576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 7286076 - 7286280
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  7286076 agttacaaaaaatacttaggcggccaatggttcaaatttcgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 7286174  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||| |||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  7286175 aaaaatatgcatgttcaagtcgtttccaaataaagagttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatct 7286274  T
Q  201 tcactc 206  Q
    ||||||    
T  7286275 tcactc 7286280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 20995709 - 20995513
Alignment:
Q  9 aaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaatat 108  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||        |||||||||||||||||||||||||    
T  20995709 aaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaagtgataagcta-ttttttgatctagagaagccacctaaaaatat 20995611  T
Q  109 gcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||||| ||||||||||||||||| || ||||||  |||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  20995610 gcacgttcaagtcgtttccaaataaagatttggtgttcatgatcttcactttcaacagatcaccttaactctaatcctagactagattatcttcactc 20995513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 41781240 - 41781445
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||       | |||||||||||||||    
T  41781240 agttatgaaaaatacttaggcggccaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-acctagagaagccacct 41781338  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaat-cctagacaatattatc 199  Q
    |||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| |||| ||||||||||||||||| ||||||| | ||||||    
T  41781339 aaaaatatgcacgttcaagtcgttcccaaataaagactttgtgttcatgatccgcactttcaacatatcaccttaactctaatccctagactagattatc 41781438  T
Q  200 ttcactc 206  Q
    |||||||    
T  41781439 ttcactc 41781445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 33610960 - 33610756
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||       ||||||||||||||| |    
T  33610960 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacat 33610862  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||| |||||||| ||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||| | ||||| |    
T  33610861 aaaaatatgcacgttgaagtcgtttccaaataaagatttggtgttcataatccgcactttcaacagatcaccttaactctaatcctagactagattatat 33610762  T
Q  201 tcactc 206  Q
    ||||||    
T  33610761 tcactc 33610756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 20350333 - 20350538
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||| |||       ||||| |||||||||||    
T  20350333 agttacaaaaaatacttaggcggtcaacggttcaaattttgccgaaaacatatgttagaggtaggtgataagttaatttttttatctaaagaagccacct 20350432  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||| |||| ||||| ||||||||||||||| || | |||||||    
T  20350433 aaaaatatgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccacactttcaacaaatcactttaactctaatcctacactagattatct 20350532  T
Q  201 tcactc 206  Q
    ||||||    
T  20350533 tcactc 20350538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2195564 - 2195768
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||| || ||||||||||| ||||||| ||||||||| ||| |||||||||||||| |||       |||||||||||||||||    
T  2195564 agttacaaaaaatacttaggtggccaatggttcaaattttgccaagaacatatgttataggtaggtgataagttaatttttt-atctagagaagccacct 2195662  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  2195663 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 2195762  T
Q  201 tcactc 206  Q
    ||||||    
T  2195763 tcactc 2195768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 3150424 - 3150220
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||| | ||||| ||||| ||||||||||||||||| ||| |||||||||||||| |||       |||||||||||||||||    
T  3150424 agttacaaaaaatacttaggcagccaatgattcaaattttgccgagaacatatgttaaaggtaggtgataagttaatttttg-atctagagaagccacct 3150326  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||||||  |||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||| | |||||||    
T  3150325 aaaaatatgcacgttcaagtcgttttcaaataaagatttggtgttcatgatctgcactttcaacagatcaccttaactctaatcctagactagattatct 3150226  T
Q  201 tcactc 206  Q
    ||||||    
T  3150225 tcactc 3150220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 27066271 - 27066475
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| ||||||||||||| || |||||| |||| |||||| |||||||||| |||||||||||||||||| |||       |||||||||||||||||    
T  27066271 agttacaaaaaatacttaggtggccaatggatcaaattttgctgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccacct 27066369  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||| || | |||||||    
T  27066370 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctatactagattatct 27066469  T
Q  201 tcactc 206  Q
    ||||||    
T  27066470 tcactc 27066475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33930213 - 33930417
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       | ||||||||||| |||    
T  33930213 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatattttagaggtaggtgataagctaa-tttttgacctagagaagccgcct 33930311  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||| || ||||||||||||||||| || ||||||||||| || |||| |||||||||| | ||||| || || | |||||||    
T  33930312 aaaaatatgcacgttcaagtcattcccaaataaagatttggtattcatgatccgcacgttcaacatatcaccttaattttaatcatatactagattatct 33930411  T
Q  201 tcactc 206  Q
    ||||||    
T  33930412 tcactc 33930417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 10512178 - 10511981
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||| |||       || |||||||||||||||||||||    
T  10512178 aaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttaaaggtaggtgataagttaatttttg-atttagagaagccacctaaaaata 10512080  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||| |||||||| ||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| ||||    
T  10512079 tgcacgtttaagtcgttcccaaataaagatttggtattcatgatccgcactttcaacagattaccttaactctaatcctagactagattatctttactc 10511981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 26320895 - 26320693
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||| ||||||||| | |||||||||||||||||| |||       |||||||||||||||||    
T  26320895 agttacaaaaaatacttaggcggacaatggttcaaattttgacgagaacatgtgttagaggtaggtgataagttaatttttt-atctagagaagccacct 26320797  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||  || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  26320796 aaaaatatgcacgttcaagtcgtttccaaataaagatttgg--ttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 26320699  T
Q  201 tcactc 206  Q
    ||||||    
T  26320698 tcactc 26320693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 35539736 - 35539556
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| |||| ||||||||| || |||||||||||||||||| |||       ||||||||||||||||||||||||    
T  35539736 aaaaatacttaggcggccaatggttcaaatttt-ccgagaacagatgttagaggtaggtgataagttaatttttg-atctagagaagccacctaaaaata 35539639  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagac 190  Q
    ||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  35539638 tgcacgttcaaatcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagac 35539556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 38934868 - 38935065
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||| | |||||||||||||||||| |||       || |||||||||||  ||||||||    
T  38934868 aaaaatacttaggcggccaatggttcaaattttgtcgagaacatgtgttagaggtaggtgataagttaatttttg-atgtagagaagccatttaaaaata 38934966  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  38934967 tgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactc 38935065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 4882671 - 4882875
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||  |||       |||||||||||||||||    
T  4882671 agttactaaaaatacttcggcggccaatggttcaagttttgtcgagaacatatgttagaggtaggtgataaattaatttttg-atctagagaagccacct 4882769  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| |||||||| |||||| | || ||||||| |||||| ||||||||||||||||||||||||||||| | ||||| |    
T  4882770 aaaaatatgcacgttcaagtcgtttccaaataacgatttgatgttcatgatccacactttcaacagatcaccttaactctaatcctagactagattattt 4882869  T
Q  201 tcactc 206  Q
    ||||||    
T  4882870 tcactc 4882875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 30689710 - 30689916
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnn-atctagagaagccacc 99  Q
    |||||| |||||||||||||||  ||||||||||| ||||||||||||| ||| |||||||||||||||||| |||        ||||||||||||||||    
T  30689710 agttacaaaaaatacttaggcgaccaatggttcaaattttgccgagaacgtatgttagaggtaggtgataagttaattttttttatctagagaagccacc 30689809  T
Q  100 taaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatc 199  Q
    ||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||| |||| |||||||||||| |||| |||||| | |||||     
T  30689810 taaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccacactttcaacatatcaccttaactttaattctagactagattatt 30689909  T
Q  200 ttcactc 206  Q
    |||||||    
T  30689910 ttcactc 30689916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 3396949 - 3396752
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||| |||||||| |||       ||||||||||||||||||||||||    
T  3396949 aaaaatacttaggcggccaatgattcaaattttgccgagaacatatgttagaggtatgtgataagttaatttttg-atctagagaagccacctaaaaata 3396851  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||| |||| ||||||||||||||| | || |||||||||||||| |||| ||||||||||||||||||||| || | ||| |||||||||    
T  3396850 tgcacgttcaaggcgtttccaaataaagatttgatgttcatgatccgcactttcaacatatcaccttaactctaatcctaaactagattttcttcactc 3396752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 19448393 - 19448598
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatatt-agaggtaggtgataagctaannnnnnnatctagagaagccacc 99  Q
    |||||| ||||||| |||||||| ||||| ||||| ||||||| ||||||||| || |||||||||||||||| |||       ||||||||||||||||    
T  19448393 agttacaaaaaatatttaggcggccaatgattcaaattttgccaagaacatatgtttagaggtaggtgataagttaatttttg-atctagagaagccacc 19448491  T
Q  100 taaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatc 199  Q
    ||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| ||||||| | ||||||||||||||||||||||||||| | ||||||    
T  19448492 taaaaatatgcacgttcaagtcgcttccaaataaaaatttggtgtttatgatctgcactttcagcagatcaccttaactctaatcctagactagattatc 19448591  T
Q  200 ttcactc 206  Q
    |||||||    
T  19448592 ttcactc 19448598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 17996969 - 17997171
Alignment:
Q  3 ttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaa 102  Q
    |||| |||||||||||||| | ||||||||||| ||||| | ||||||||| |||||||  | | ||||| |||       || ||||||||||||||||    
T  17996969 ttacaaaaaatacttaggctgccaatggttcaaattttgtcaagaacatatgttagaggaggttaataagttaatttttg-atttagagaagccacctaa 17997067  T
Q  103 aaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttc 202  Q
    |||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||| | |||||||||    
T  17997068 aaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatcttc 17997167  T
Q  203 actc 206  Q
    ||||    
T  17997168 actc 17997171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 34374196 - 34374000
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||| |||       |||||||||| |||||||||||||    
T  34374196 aaaaatacttaggcggccaatggttcaaattt-gccgagaacagatgttagaggtaggtgataagttaatttttg-atctagagaaaccacctaaaaata 34374099  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||| |||||  |||||||||||||||| || |||||||| ||||| |||||||||||||||||||||| |||||| | ||||| |||||||    
T  34374098 tgcacgttcaaatcgttcacaaataaagatttggtgttcatgatccgtactttcaacagatcaccttaactctaattctagactagattatattcactc 34374000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 12420329 - 12420213
Alignment:
Q  90 agaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctaga 189  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||| ||| || ||||||| |||||| ||||||||||||||||||||||||||||    
T  12420329 agaagccacctaaaaatatgcacgtttaaatcgttcccaaataaagattcggtgttcatgatccacactttcaacagatcaccttaactctaatcctaga 12420230  T
Q  190 caatattatcttcactc 206  Q
    ||| |||||||||||||    
T  12420229 caagattatcttcactc 12420213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 20758346 - 20758548
Alignment:
Q  3 ttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaa 102  Q
    |||| |||||||||||||| | |||| |||||| ||||| || |||||||| | | ||||| |||||||| |||       |||||||||||||||||||    
T  20758346 ttacaaaaaatacttaggcagccaattgttcaaattttgtcgtgaacatatgtcaaaggtatgtgataagttaatttttg-atctagagaagccacctaa 20758444  T
Q  103 aaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttc 202  Q
    ||||||||| |||||||||||| |||| |||||||||||| || ||||| |||| ||| ||||||||| ||||||| |||||||| || | |||||||||    
T  20758445 aaatatgcatgttcaagtcgtttccaagtaaagatttggtgttcatgattcgcattttcaacagatcatcttaactataatcctaaactagattatcttc 20758544  T
Q  203 actc 206  Q
    ||||    
T  20758545 actc 20758548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 12751 - 12547
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       || ||||||||||||||    
T  12751 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaattttta-atatagagaagccacct 12653  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||||||||||||||||  |||||||||||||||| || |||| ||||||||| |||| ||||| |||||||||||||||||||| |||||||    
T  12652 aaaaatatgcacgttcaagtcgttctcaaataaagatttggtgttcatgacccgcactttcaacatatcacattaactctaatcctagacaagattatct 12553  T
Q  201 tcactc 206  Q
    ||||||    
T  12552 tcactc 12547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 11236 - 11032
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||| ||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  11236 agttacgaaaaataattaggtggtcaatggttaaacttttcccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 11138  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  11137 aaaaatacgcacgttcaagtcgttaccaaataaagatttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagacaagattatct 11038  T
Q  201 tcactc 206  Q
    ||||||    
T  11037 tcactc 11032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 4787 - 4583
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||||||||||| ||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||       |||||||||||||||||    
T  4787 agttacgaaaaataattaggtggtcaatggttaaacttttcccgagaacatatgttagaggtaggtgataagctaatttttg-atctagagaagccacct 4689  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||||| |||||||    
T  4688 aaaaatacgcacgttcaagtcgttaccaaataaagatttggtgttcatgatccgcactttcaacaaatcaccttaactataatcctagacaagattatct 4589  T
Q  201 tcactc 206  Q
    ||||||    
T  4588 tcactc 4583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 101143 - 101347
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||       | |||||||||||||||    
T  101143 agttacgaaaaatacttaggcggccaatggttcaacttttgccgagaacatatgttagaggtaggtgataagctaatttttg-acctagagaagccacct 101241  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||||| ||||||||| || ||||||||||||||||| || |||||||||||||| ||| ||||||||||| |||||||||| || | |||||||    
T  101242 aaaaatatgcatgttcaagtcattcccaaataaagatttggtgttcatgatccgcactttcaaccgatcaccttaattctaatcctatactagattatct 101341  T
Q  201 tcactc 206  Q
    ||||||    
T  101342 tcactc 101347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 26182 - 25978
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||| ||||| | |||||||||||||||||| |||       |||||||||||||||||    
T  26182 agttacaaaaaatacttaggcggccaatggttcaaattttgccgataacatgtgttagaggtaggtgataagttaatttttt-atctagagaagccacct 26084  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  26083 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 25984  T
Q  201 tcactc 206  Q
    ||||||    
T  25983 tcactc 25978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 10361 - 10565
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||| ||||| | |||||||||||||||||| |||       |||||||||||||||||    
T  10361 agttacaaaaaatacttaggcggccaatggttcaaattttgccgataacatgtgttagaggtaggtgataagttaatttttt-atctagagaagccacct 10459  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||||| | |||||||    
T  10460 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatct 10559  T
Q  201 tcactc 206  Q
    ||||||    
T  10560 tcactc 10565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 120344 - 120542
Alignment:
Q  7 gaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaat 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||       |||||||||| ||||||||||||    
T  120344 gaaaaatacttaggcggtcaatggttcaacttttgcagagaacatatgttagaggtatgtgataagctaatttttg-atctagagaatccacctaaaaat 120442  T
Q  107 atgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||| ||||| |||||||||||||| || || |||||| ||||||| |||||||||||||||||||||||||| || | |||||||||||||    
T  120443 atgcacgttcaaatcgttcccaaataaagatttagtgttcatgatctgcactttcaacagatcaccttaactctaatcctatactagattatcttcactc 120542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 176900 - 177096
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||| |||       ||||||||||||||||||||||||    
T  176900 aaaaatacttaggcggccaatggttcaaattt-gccgagaacagatgttagaggtaggtgataagttaatttttg-atctagagaagccacctaaaaata 176997  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| | ||||| |||||||    
T  176998 tgcacgttcaaatcgttcccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcttagactaaattatattcactc 177096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 49050 - 48854
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||| |||       |||||||||||||||| |||||||    
T  49050 aaaaatacttaggcggccaatggttcaaattt-gccgagaacatatgttagaggtaggtgataagttaatttttg-atctagagaagccaccgaaaaata 48953  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||| | ||||| |||||||    
T  48952 tgcacgttcaagtcgttcccaaataaagatttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattatattcactc 48854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1634 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold1634
Description:

Target: scaffold1634; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 854 - 651
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||| |||||||| |||       |||||||| |||||| |    
T  854 agttacaaaaaatacttaggcggccaatggttcaaattttgccaagaacatatgttagaggtaagtgataagttaatttttg-atctagagtagccactt 756  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatct 200  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||| | |||||||    
T  755 aaaaatatg-acgttcaagtcgtttccaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatgctagactagattatct 657  T
Q  201 tcactc 206  Q
    ||||||    
T  656 tcactc 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 3234 - 3038
Alignment:
Q  8 aaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacctaaaaata 107  Q
    |||||||||||||||| |||| |||||| ||| |||||||||| || |||||||||| ||||||| |||       ||||||||||||||||||||||||    
T  3234 aaaaatacttaggcggccaatagttcaaattt-gccgagaacagatgttagaggtagatgataagttaatttttg-atctagagaagccacctaaaaata 3137  T
Q  108 tgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||  |||| | ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  3136 tgcacgttcaaagcgttccaaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactc 3038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 15078 - 14959
Alignment:
Q  84 atctagagaagccacctaaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaat 183  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  15078 atctagagaagccacctaaaaatatgcacgttcaagtcgttttcaaataaagatttggtgttcatgatccgcactttcaacagatcaccttaactctaat 14979  T
Q  184 cctagacaatattatcttca 203  Q
    ||||||| | ||||||||||    
T  14978 cctagactagattatcttca 14959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 851 - 1003
Alignment:
Q  1 agttacgaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaannnnnnnatctagagaagccacct 100  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| |||||| |||       |||||||||||||||||    
T  851 agttacaaaaaatacttaggcggccaatggttcaaattttgccgagaacatatgttagaagtaggcgataagttaatttttt-atctagagaagccacct 949  T
Q  101 aaaaatatgcacgttcaagtcgttaccaaataaagatttggtctttatgatccg 154  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  950 aaaaatatgcacgttcaagtcgtttccaaataaagatttggtgttcatgatccg 1003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 10432 - 10353
Alignment:
Q  127 caaataaagatttggtctttatgatccgcacttttaacagatcaccttaactctaatcctagacaatattatcttcactc 206  Q
    |||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||    
T  10432 caaataaagatttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagacaagattatcttcactc 10353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 12502 - 12571
Alignment:
Q  7 gaaaaatacttaggcggtcaatggttcaacttttgccgagaacatatattagaggtaggtgataagctaa 76  Q
    ||||| ||||| || |||||||||||||||||||| ||||||| | | ||||||||||||| ||| ||||    
T  12502 gaaaactacttgggtggtcaatggttcaacttttgtcgagaacgtgtgttagaggtaggtggtaaactaa 12571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University