View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_high_35 (Length: 209)
Name: NF11109_high_35
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 8599360 - 8599553
Alignment:
| Q |
1 |
atacttacgactctcttccaaagactcagtagaagctccaattccagaggattcagttaaaccataaccttgaaagatacttacattagggtacttttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8599360 |
atacttacgactctcttccaaagactcagtagaagctccaattccagaggattcagttaaaccataaccttgaaagatacttacattagggtacttttca |
8599459 |
T |
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| Q |
101 |
ataaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctg |
194 |
Q |
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| T |
8599460 |
ataaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctg |
8599553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 8614066 - 8613873
Alignment:
| Q |
1 |
atacttacgactctcttccaaagactcagtagaagctccaattccagaggattcagttaaaccataaccttgaaagatacttacattagggtacttttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8614066 |
atacttacgactctcttccaaagactcagtagaagctccaattccagaggattcagttaaaccataaccttgaaagatacttacattagggtacttttca |
8613967 |
T |
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| Q |
101 |
ataaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctg |
194 |
Q |
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| T |
8613966 |
ataaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctg |
8613873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 8534121 - 8534314
Alignment:
| Q |
1 |
atacttacgactctcttccaaagactcagtagaagctccaattccagaggattcagttaaaccataaccttgaaagatacttacattagggtacttttca |
100 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534121 |
atacttacgactctcttccaaagactcggtagaagctccaattccagaggattcagttaaaccataaccttgaaagatacttacattagggtacttttca |
8534220 |
T |
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| Q |
101 |
ataaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctg |
194 |
Q |
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| T |
8534221 |
ataaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctg |
8534314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 14751775 - 14751965
Alignment:
| Q |
2 |
tacttacgactctcttccaaagactcagtagaagctccaattccagaggattcagttaaaccataaccttgaaagatacttacattagggtacttttcaa |
101 |
Q |
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||||||||||||||||||||||| ||||||||||| ||| |||| ||||||| || | ||||||||| |||| ||| |||||||||||||| |||| |
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| T |
14751775 |
tacttacgactctcttccaaagaatcagtagaagccccagctccaaaggattctgtcagaccataaccctgaaggatggcaacattagggtacttatcaa |
14751874 |
T |
|
| Q |
102 |
taaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatc |
192 |
Q |
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||||||||| || || ||||| || | |||||| ||||| | | |||||||||||| |||||||| || || ||||||||||| ||||| |
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| T |
14751875 |
caaacccttcagtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatc |
14751965 |
T |
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