View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_high_5 (Length: 538)
Name: NF11109_high_5
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 15 - 520
Target Start/End: Original strand, 30114570 - 30115075
Alignment:
| Q |
15 |
atgaaaaacttccaaccaataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtccaaaaagg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114570 |
atgaaaaacttccaaccaataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtccaaaaagg |
30114669 |
T |
|
| Q |
115 |
tgatacatactttcacttggtaaatgaaacttaccaaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttctgaaaacattgcaatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114670 |
tgatacatactttcacttggtaaatgaaacttaccaaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttctgaaaacattgcaatt |
30114769 |
T |
|
| Q |
215 |
ggtgccgaggtaacagttccagtactttgtgcttgtcctacaacaaaacaggtggcgaaagggatcacttccttgctggtttacatagtgaactatggtg |
314 |
Q |
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| T |
30114770 |
ggtgccgaggtaacagttccagtactttgtgcttgtcctacaacaacacagatggcgaaagggatcacttccttgctggtttacatagtgaactatggtg |
30114869 |
T |
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| Q |
315 |
aaactgttaagtctataggagaggcttatggtgttgacgaacaaagcatattagaggcaaatgagttgcaaccaagtgaaaacagaagtgtgattctctt |
414 |
Q |
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| T |
30114870 |
aaactgttaagtctataggagaggcttatggtgttgatgaacaaagcatattagaggcaaatgagttgcaaccaagtgaaaacagaagtgtgattctctt |
30114969 |
T |
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| Q |
415 |
tgcgttgacaccgatattagttcctcttagaggcaagagctgcaaagaagatcctgatagtttctactgtacttgttctcagggaaggctagcagatgga |
514 |
Q |
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| T |
30114970 |
tgcgttgacaccgatattacttcctcttagaggcaagagctgcaaagaggatcctgatagtttctactgtacttgttctcagggaaggctagcagatgga |
30115069 |
T |
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| Q |
515 |
agttgt |
520 |
Q |
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|||||| |
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| T |
30115070 |
agttgt |
30115075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 30116965 - 30117155
Alignment:
| Q |
32 |
aataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtc-caaaaaggtgatacatactttcac |
130 |
Q |
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||||||| |||| |||||||||||| || |||| ||| ||||||||||||||||||||||| || ||||||||| ||||||||||| | || | |||| |
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| T |
30116965 |
aataaaataatcgttgtccctatctgttgttcatattcaggaaatatctaccaacataacaccccctacactgtcaaaaaaaggtgattcctattatcac |
30117064 |
T |
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| Q |
131 |
ttggtaaatgaaacttacc----aaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttc--tgaaaacattgcaattg |
215 |
Q |
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| T |
30117065 |
ttggtaaatggtacttaccaaagaaagcctcacgccatgtcaggctacgaagggtcagaattactatgcttctgtgaaaacatttcaattg |
30117155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 452
Target Start/End: Original strand, 30104375 - 30104801
Alignment:
| Q |
32 |
aataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtccaaaaaggtgatacatactttcact |
131 |
Q |
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|||||| ||||||||||||| |||| || |||||| ||||||||||||||| |||| || ||||| |||| | | |||||| |||| | | | |
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| T |
30104375 |
aataaatcaatcattgtcccagtcttttgttcatgtgatggaaatatctaccagcatagtacatcttactctgtaaagcagaatgatacttactatgagt |
30104474 |
T |
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| Q |
132 |
tggtaaatgaaacttaccaaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttctgaaaacattgcaattggtgccgaggtaacagt |
231 |
Q |
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||||||| |||||||||||| |||| ||||| || || || |||| ||||||||| || |||||| ||| ||| | ||| ||| ||| | ||||| |
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| T |
30104475 |
tggtaaaagaaacttaccaaggccttacaacctgccaggcattgatgggtcagaactactatgctcctgtctcaattcaacttgatgctgagctcacagt |
30104574 |
T |
|
| Q |
232 |
tccagtactttgtgcttgtcctacaacaaaacaggtggcgaaagggatcacttccttgctggtttacatagtgaactatggtgaaactgttaagtctata |
331 |
Q |
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|||| |||| ||||||||||| ||| |||| | | ||| |||||| | || ||||| || ||| |||| ||||||||||||||||| |||||||| ||| |
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| T |
30104575 |
tccaatactatgtgcttgtcccacagcaaacctgacggcaaaaggggttacctccttactcgttcacatggtgaactatggtgaaacggttaagtcgata |
30104674 |
T |
|
| Q |
332 |
ggagaggcttatggtgttgacgaacaaagcatattagaggcaaatgagtt------gcaaccaagtgaaaacagaagtgtgattctctttgcgttgacac |
425 |
Q |
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||||| |||||||||||||| ||||| || || |||||| |||||||| || | ||||| |||||| |||||||| |||||||| | ||| | |
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| T |
30104675 |
ggagaagcttatggtgttgatgaacatagtatgcgagaggccaatgagttgtcagggctgcaaagtgcaaacagcagtgtgatcctctttgcatcgacgc |
30104774 |
T |
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| Q |
426 |
cgatattagttcctcttagaggcaaga |
452 |
Q |
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| ||| |||||||||| ||| |||||| |
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| T |
30104775 |
ctatactagttcctctgagacgcaaga |
30104801 |
T |
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