View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_low_1 (Length: 646)

Name: NF11109_low_1
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_low_1
NF11109_low_1
[»] chr3 (32 HSPs)
chr3 (16-203)||(5366110-5366299)
chr3 (19-207)||(29100268-29100459)
chr3 (70-198)||(3328198-3328326)
chr3 (123-203)||(21353674-21353753)
chr3 (12-111)||(33386461-33386557)
chr3 (70-196)||(35925599-35925723)
chr3 (70-197)||(36029212-36029338)
chr3 (152-211)||(4386851-4386911)
chr3 (127-198)||(1417390-1417460)
chr3 (70-111)||(8126834-8126875)
chr3 (151-211)||(25517085-25517146)
chr3 (15-48)||(25517446-25517479)
chr3 (15-111)||(27986245-27986338)
chr3 (16-111)||(40592572-40592664)
chr3 (123-202)||(21156542-21156620)
chr3 (169-203)||(29196507-29196541)
chr3 (156-198)||(37466408-37466450)
chr3 (70-111)||(1306154-1306195)
chr3 (70-111)||(1736145-1736186)
chr3 (70-111)||(3715843-3715884)
chr3 (70-111)||(16264553-16264594)
chr3 (70-111)||(18552726-18552767)
chr3 (70-111)||(27453164-27453205)
chr3 (70-111)||(27974793-27974834)
chr3 (70-111)||(32143527-32143568)
chr3 (70-111)||(39032395-39032436)
chr3 (70-111)||(47923745-47923786)
chr3 (167-203)||(9666587-9666623)
chr3 (246-294)||(21156381-21156429)
chr3 (349-393)||(25516833-25516877)
chr3 (71-111)||(25795984-25796024)
chr3 (159-191)||(37387542-37387574)
[»] chr4 (16 HSPs)
chr4 (15-203)||(34670463-34670650)
chr4 (64-207)||(37781970-37782114)
chr4 (15-101)||(873316-873401)
chr4 (357-432)||(873731-873807)
chr4 (16-111)||(16623094-16623186)
chr4 (16-111)||(16628673-16628765)
chr4 (130-206)||(18912276-18912351)
chr4 (70-187)||(5112365-5112482)
chr4 (70-111)||(10047585-10047626)
chr4 (70-111)||(24334015-24334056)
chr4 (70-111)||(28468388-28468429)
chr4 (70-111)||(31985485-31985526)
chr4 (167-203)||(5871832-5871867)
chr4 (175-203)||(6542300-6542328)
chr4 (167-203)||(24969124-24969159)
chr4 (273-301)||(37781807-37781835)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-211)||(14785-14979)
[»] chr2 (20 HSPs)
chr2 (30-203)||(18674213-18674386)
chr2 (15-211)||(28770572-28770768)
chr2 (16-106)||(12632890-12632980)
chr2 (349-432)||(16388261-16388344)
chr2 (349-432)||(16388674-16388757)
chr2 (124-211)||(2869599-2869687)
chr2 (127-203)||(15903800-15903875)
chr2 (16-197)||(3278118-3278297)
chr2 (16-96)||(41586351-41586429)
chr2 (70-111)||(14698861-14698902)
chr2 (70-111)||(23078323-23078364)
chr2 (123-203)||(2837936-2838015)
chr2 (16-111)||(36757563-36757655)
chr2 (70-111)||(8040268-8040309)
chr2 (70-111)||(10445319-10445360)
chr2 (70-111)||(21630149-21630190)
chr2 (70-111)||(34389055-34389096)
chr2 (167-203)||(1631853-1631888)
chr2 (366-431)||(18674623-18674684)
chr2 (130-198)||(35397628-35397694)
[»] chr6 (18 HSPs)
chr6 (15-202)||(30517922-30518112)
chr6 (63-207)||(33721404-33721548)
chr6 (70-197)||(31936695-31936820)
chr6 (16-198)||(31979631-31979808)
chr6 (70-203)||(14521785-14521919)
chr6 (16-187)||(24435773-24435939)
chr6 (70-198)||(21801196-21801323)
chr6 (351-437)||(98967-99055)
chr6 (70-197)||(5572095-5572219)
chr6 (70-197)||(18232964-18233091)
chr6 (169-203)||(16569047-16569081)
chr6 (70-108)||(21356244-21356282)
chr6 (70-111)||(5757330-5757371)
chr6 (70-111)||(22963903-22963944)
chr6 (70-111)||(23824449-23824490)
chr6 (12-48)||(1114895-1114931)
chr6 (151-203)||(1115037-1115089)
chr6 (349-421)||(30519222-30519294)
[»] chr1 (30 HSPs)
chr1 (15-207)||(25116498-25116690)
chr1 (16-197)||(32889558-32889734)
chr1 (349-432)||(8281135-8281219)
chr1 (12-203)||(8281430-8281620)
chr1 (349-432)||(10996772-10996856)
chr1 (16-198)||(47098626-47098804)
chr1 (16-198)||(47102640-47102821)
chr1 (127-201)||(17345429-17345502)
chr1 (70-198)||(19073046-19073173)
chr1 (70-198)||(19120936-19121063)
chr1 (123-211)||(35109443-35109531)
chr1 (123-198)||(32736902-32736976)
chr1 (366-430)||(35109745-35109811)
chr1 (166-207)||(11032268-11032309)
chr1 (166-206)||(918428-918468)
chr1 (123-206)||(3019839-3019921)
chr1 (70-111)||(3281911-3281952)
chr1 (151-200)||(10997071-10997120)
chr1 (15-101)||(10997173-10997263)
chr1 (63-111)||(11031320-11031366)
chr1 (70-111)||(13598604-13598645)
chr1 (70-111)||(13604474-13604515)
chr1 (70-111)||(16124366-16124407)
chr1 (70-111)||(19358693-19358734)
chr1 (70-111)||(19361282-19361323)
chr1 (70-111)||(19366158-19366199)
chr1 (70-111)||(19379922-19379963)
chr1 (130-203)||(22819541-22819613)
chr1 (70-111)||(29652017-29652058)
chr1 (70-111)||(40816668-40816709)
[»] chr8 (18 HSPs)
chr8 (20-202)||(31513135-31513314)
chr8 (14-196)||(8863425-8863604)
chr8 (70-197)||(19752246-19752372)
chr8 (12-203)||(3051232-3051420)
chr8 (128-201)||(9054748-9054820)
chr8 (154-203)||(6813795-6813845)
chr8 (70-203)||(7493025-7493158)
chr8 (70-111)||(19175606-19175647)
chr8 (16-111)||(7412544-7412636)
chr8 (169-203)||(30291620-30291654)
chr8 (123-211)||(5990467-5990555)
chr8 (16-45)||(11712237-11712266)
chr8 (70-111)||(26288096-26288137)
chr8 (70-111)||(26301353-26301394)
chr8 (70-111)||(26313347-26313388)
chr8 (70-111)||(26403081-26403122)
chr8 (70-111)||(31071079-31071120)
chr8 (166-206)||(42093128-42093168)
[»] chr7 (22 HSPs)
chr7 (16-198)||(23402814-23402993)
chr7 (127-203)||(5817180-5817255)
chr7 (16-198)||(20284206-20284385)
chr7 (70-197)||(9185026-9185153)
chr7 (70-197)||(9189859-9189986)
chr7 (12-82)||(27984678-27984747)
chr7 (70-197)||(2580508-2580635)
chr7 (16-111)||(46516106-46516198)
chr7 (257-301)||(28617334-28617378)
chr7 (127-198)||(9235492-9235562)
chr7 (169-203)||(24526017-24526051)
chr7 (166-211)||(28617173-28617219)
chr7 (70-111)||(56153-56194)
chr7 (70-111)||(2479540-2479581)
chr7 (148-205)||(4162699-4162756)
chr7 (70-111)||(4796520-4796561)
chr7 (70-111)||(21640014-21640055)
chr7 (70-111)||(21646212-21646253)
chr7 (70-111)||(21983490-21983531)
chr7 (70-111)||(29160009-29160050)
chr7 (127-203)||(3047367-3047441)
chr7 (71-111)||(18413844-18413884)
[»] scaffold0016 (1 HSPs)
scaffold0016 (15-203)||(102292-102479)
[»] chr5 (23 HSPs)
chr5 (15-207)||(2630339-2630530)
chr5 (131-211)||(33030854-33030934)
chr5 (127-206)||(6741961-6742039)
chr5 (16-197)||(31300396-31300574)
chr5 (70-198)||(28832374-28832502)
chr5 (349-414)||(34842436-34842500)
chr5 (128-202)||(3651613-3651686)
chr5 (70-187)||(11181684-11181800)
chr5 (19-86)||(3325821-3325885)
chr5 (127-198)||(42127320-42127390)
chr5 (70-147)||(11916824-11916901)
chr5 (16-111)||(30900070-30900161)
chr5 (123-202)||(5611255-5611333)
chr5 (70-111)||(9353184-9353225)
chr5 (70-111)||(10281956-10281997)
chr5 (70-111)||(17003811-17003852)
chr5 (169-206)||(31182986-31183022)
chr5 (70-111)||(36932200-36932241)
chr5 (70-111)||(38219604-38219645)
chr5 (246-294)||(5611094-5611142)
chr5 (167-206)||(19806395-19806432)
chr5 (167-203)||(33831692-33831727)
chr5 (159-203)||(34842715-34842759)
[»] scaffold0140 (1 HSPs)
scaffold0140 (15-111)||(8217-8310)
[»] scaffold0148 (1 HSPs)
scaffold0148 (70-111)||(10935-10976)
[»] scaffold0098 (1 HSPs)
scaffold0098 (70-111)||(45402-45443)
[»] scaffold0087 (2 HSPs)
scaffold0087 (70-111)||(36684-36725)
scaffold0087 (70-111)||(43813-43854)
[»] scaffold0076 (2 HSPs)
scaffold0076 (123-207)||(15895-15977)
scaffold0076 (360-432)||(16190-16263)
[»] scaffold0006 (2 HSPs)
scaffold0006 (70-111)||(5889-5930)
scaffold0006 (70-111)||(133131-133172)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 5366110 - 5366299
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttc-attattggaaggat-nn 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||| | ||||| || |||||||||||       
T  5366110 aactttagggttgagagtctttggtgagagtttatttcttgagttggaaaacatttgtaaacaccttgggtagtaagatttcaataattggaaggatcga 5366209  T
Q  114 nnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
          || |||||||||||| |||||| ||||||||| |||||| |||||  |||||| |||||||||||| ||||| ||| |||||||    
T  5366210 aaagtttcctttagtgttttcgcttaggattcatttattagtgtgggtgactagaaaaaagggtagaaattaagattttttcattgtgag 5366299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 29100459 - 29100268
Alignment:
Q  19 tttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacattt--gtaaacaccttgggtagtgaaatttcattattggaaggatnnnnn 116  Q
    |||||||||||||||||||||||||||||||||||||  | || |||||||||  || ||||| | |||| |||| |||  |||| | |||||||         
T  29100459 tttagggttgagtgtctttggtgagagtttatttcttaggttgggaaacatttttgtgaacacatcgggtggtgagattatattaattgaaggataaaaa 29100360  T
Q  117 nnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgagtttt 207  Q
       | | |||||| || ||||||| | |||||||||||||||  ||||| ||||||| | |||||||||||| |||||||||||||||||||    
T  29100359 agtttcctttagtattatctcttatgattcatttatgagtgtaggtgacttgaaaaacgagtagaaattagggtttgttctttgtgagtttt 29100268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 3328198 - 3328326
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  |||||||||||        | | ||| ||||||||||||||| | |||| | ||||||| ||||  |||    
T  3328198 ttgtaaacaccttgggtagtgagatttcagcattggaaggatcaaaaaacttccttttgtgttttctcttaggatacattga-gagtgtgggtgatatga 3328296  T
Q  169 aaaatgggtagaaattaggatttgttcttt 198  Q
    |||||||||||||||||||| |||||||||    
T  3328297 aaaatgggtagaaattaggacttgttcttt 3328326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 21353753 - 21353674
Alignment:
Q  123 tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||| | ||||||  | |||||||||| | |||||||||||||||||||||| | |||||||||||||    
T  21353753 tttagtgttttctcttaagattcattg-taagtgtgagtggcatgaaaaatgggtagaaattaggttgtgttctttgtgag 21353674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 33386461 - 33386557
Alignment:
Q  12 agagaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||||||||  | |||   || ||||| | ||||||||||| |||||||||||||||||||| ||||||  |||||||||||    
T  33386461 agagaactttagggttgagtgtctttgtagtgagg--atctcttgggttgagaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggat 33386557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 35925723 - 35925599
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnntcatttagtgttttctcttagggttcat-ttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  |||||||||||        || ||| ||||||||||||||| ||||| || |||| ||| |||||   |    
T  35925723 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaagcttccttttgtgttttctcttaggattcatattgtgagagtgggtgac---a 35925627  T
Q  169 aaaatgggtagaaattaggatttgttct 196  Q
     |||||||||||||||||| ||||||||    
T  35925626 caaatgggtagaaattaggttttgttct 35925599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 36029338 - 36029212
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnntcatttagtgttttctcttagggttcat-ttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  |||||||||||        || ||| ||||||||||||||| ||||| || |||| |||||||||        
T  36029338 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaagcttccttttgtgttttctcttaggattcatattttgagagtgagtgac--ac 36029241  T
Q  169 aaaatgggtagaaattaggatttgttctt 197  Q
    |||||||||||||||||||  ||||||||    
T  36029240 aaaatgggtagaaattaggtcttgttctt 36029212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 4386851 - 4386911
Alignment:
Q  152 gagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag-ttttaagc 211  Q
    ||||||| ||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  4386851 gagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagcttttaagc 4386911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 1417390 - 1417460
Alignment:
Q  127 gtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
    ||||||||||||||| ||||||   ||||||| ||||  ||||||||||||||||||||||| |||||||||    
T  1417390 gtgttttctcttaggattcattgg-gagtgtgggtgatatgaaaaatgggtagaaattaggacttgttcttt 1417460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 8126875 - 8126834
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  8126875 ttgtaaacaccttgggtagtgagatttcatcattggaaggat 8126834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 25517146 - 25517085
Alignment:
Q  151 tgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag-ttttaagc 211  Q
    |||||||| ||||| ||||||||  |||||||||||| ||||||||||||||| ||||||||    
T  25517146 tgagtgtgggtgacttgaaaaataagtagaaattagggtttgttctttgtgagcttttaagc 25517085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 25517479 - 25517446
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagttt 48  Q
    ||||||||||||||||||||||||||||||||||    
T  25517479 gaactttagggttgagtgtctttggtgagagttt 25517446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 27986245 - 27986338
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    ||||||||||||||||||||||||  | |||   || ||||| | || |||||||| |||||||||||||||||||| ||||||  |||||||||||    
T  27986245 gaactttagggttgagtgtctttgtagtgagg--atctcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggat 27986338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 40592572 - 40592664
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||||  | |||   || ||||| | || |||||||| |||||||||||||||||||| ||||||  |||||||||||    
T  40592572 aactttagggttgagtgtctttgtagtgagg--atctcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggat 40592664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 21156620 - 21156542
Alignment:
Q  123 tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtga 202  Q
    |||||||||||||||||||  ||||||||||||||   |||| | |||||||| ||||||| ||  ||||||||||||||    
T  21156620 tttagtgttttctcttaggaatcatttatgagtgtttatgac-ttaaaaatggatagaaataagattttgttctttgtga 21156542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 29196541 - 29196507
Alignment:
Q  169 aaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||||| |||||||||||||||    
T  29196541 aaaatgggtagaaattagggtttgttctttgtgag 29196507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 37466450 - 37466408
Alignment:
Q  156 gtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
    ||||||||  ||||||||||||||||||||||| |||||||||    
T  37466450 gtgagtgatatgaaaaatgggtagaaattaggacttgttcttt 37466408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 1306195 - 1306154
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  1306195 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 1306154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 1736145 - 1736186
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  1736145 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 1736186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 3715843 - 3715884
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  3715843 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 3715884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 16264594 - 16264553
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  16264594 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 16264553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 18552726 - 18552767
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  18552726 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 18552767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 27453205 - 27453164
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  27453205 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 27453164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 27974793 - 27974834
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  27974793 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 27974834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 32143568 - 32143527
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  32143568 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 32143527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 39032395 - 39032436
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  39032395 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 39032436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 47923745 - 47923786
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  47923745 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 47923786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 9666623 - 9666587
Alignment:
Q  167 gaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||||||  |||||||||||||||    
T  9666623 gaaaaatgggtagaaattagattttgttctttgtgag 9666587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 21156429 - 21156381
Alignment:
Q  246 tggtgtgttggtttcttcctctcttaattatctttgttgctttgaatat 294  Q
    |||||||||| ||||||||  ||||  ||||||||||||||||||||||    
T  21156429 tggtgtgttgttttcttcccttctttcttatctttgttgctttgaatat 21156381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 25516877 - 25516833
Alignment:
Q  349 tgagactactttactctttgattactacttactttactctacaca 393  Q
    |||||||||||||||  ||||||||||||| |||||||| |||||    
T  25516877 tgagactactttacttattgattactactttctttactcaacaca 25516833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 25796024 - 25795984
Alignment:
Q  71 tgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  25796024 tgtaaacaccttgggtagtgagatttcaccattggaaggat 25795984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 37387574 - 37387542
Alignment:
Q  159 agtgacgtgaaaaatgggtagaaattaggattt 191  Q
    |||||| ||||||||||||||||||||||||||    
T  37387574 agtgacttgaaaaatgggtagaaattaggattt 37387542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 34670463 - 34670650
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnn 114  Q
    |||||||||||| |||||| ||| |||||||||| ||||||||| |||||||||||||||| || |||||||||||| || ||||||  ||||||||       
T  34670463 gaactttagggtagagtgtatttagtgagagttt-tttcttgagttgagaaacatttgtaagcatcttgggtagtgagatctcattagaggaaggatcta 34670561  T
Q  115 nnnnntca-tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
         |   ||||||||||||||||||| ||||||  |||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  34670562 aaagttttctttagtgttttctcttaggattcattg-tgagtgtgagtgacttgaaaaatggatagaaattatgatttgttctttgtgag 34670650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 37782114 - 37781970
Alignment:
Q  64 aaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnn-tcatttagtgttttctcttagggttcatttatgagtgtgagtg 162  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||         || ||||||||||||||||| | |||||||| ||||||  |||    
T  37782114 aaacatttgtaaacaccttgggtagtgagatttcattattggaagaatcaaaaagtctcttttagtgttttctcttaagattcatttacgagtgtaggtg 37782015  T
Q  163 acgtgaaaaatgggtagaaattaggatttgttctttgtgagtttt 207  Q
    || |||||||||||||||||||| |||||||||||||||||||||    
T  37782014 acttgaaaaatgggtagaaattaagatttgttctttgtgagtttt 37781970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 873316 - 873401
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcatta 101  Q
    |||||||||||||||||||||||||||| | ||| ||||||| | || | ||||||||||||||||||| ||||||| || ||||||    
T  873316 gaactttagggttgagtgtctttggtgataattt-tttcttgggttggggaacatttgtaaacaccttgagtagtgagatctcatta 873401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 432
Target Start/End: Original strand, 873731 - 873807
Alignment:
Q  357 ctttactctttgattactacttactttactctacacatctaag-tttattggtttgattatttgtttgaattcacaa 432  Q
    |||| ||| |||||||| |||| | |||||||| ||||||||| ||||||||| | ||||||||||| |||||||||    
T  873731 ctttgctcattgattacaacttccattactctatacatctaagttttattggtgtaattatttgtttaaattcacaa 873807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 16623094 - 16623186
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||||  | |||   || ||||| | || |||||||| |||||||||||||||||||| ||||||  |||||||||||    
T  16623094 aactttagggttgagtgtctttgtagtgagg--atctcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggat 16623186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 16628673 - 16628765
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||||  | |||   || ||||| | || |||||||| |||||||||||||||||||| ||||||  |||||||||||    
T  16628673 aactttagggttgagtgtctttgtagtgagg--atctcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggat 16628765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 18912276 - 18912351
Alignment:
Q  130 ttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgagttt 206  Q
    |||||||||||| ||||||  || || |||||||| |||||||||| || || ||||| ||||||||||||||||||    
T  18912276 ttttctcttaggattcattg-tgggtttgagtgacttgaaaaatggatataatttagggtttgttctttgtgagttt 18912351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 5112482 - 5112365
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat-nnnnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  |||||||||||         || |||  |||||||||||||| |||| || |||||||||||||| | |    
T  5112482 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttatgttttctcttaggattca-ttgtgagtgtgagtgacttaa 5112384  T
Q  169 aaaatgggtagaaattagg 187  Q
    ||||| |||| ||||||||    
T  5112383 aaaataggtacaaattagg 5112365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 10047626 - 10047585
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  10047626 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 10047585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 24334056 - 24334015
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  24334056 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 24334015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 28468388 - 28468429
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  28468388 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 28468429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 31985485 - 31985526
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||||||||||  || ||||||||    
T  31985485 ttgtaaacaccttgggtagtgaaatttcaccatgggaaggat 31985526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 5871832 - 5871867
Alignment:
Q  167 gaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||||||| |||||||||||||||    
T  5871832 gaaaaatgggtagaaattagg-tttgttctttgtgag 5871867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 6542328 - 6542300
Alignment:
Q  175 ggtagaaattaggatttgttctttgtgag 203  Q
    |||||||||||||||||||||||||||||    
T  6542328 ggtagaaattaggatttgttctttgtgag 6542300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 24969124 - 24969159
Alignment:
Q  167 gaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24969124 gaaaaatgggtagaaatta-gatttgttctttgtgag 24969159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 301
Target Start/End: Complemental strand, 37781835 - 37781807
Alignment:
Q  273 ttatctttgttgctttgaatatgcttgtg 301  Q
    |||||||||||||||||||||||||||||    
T  37781835 ttatctttgttgctttgaatatgcttgtg 37781807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 14979 - 14785
Alignment:
Q  18 ctttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnn 117  Q
    |||||||||||| |||||||||||||||||||||| ||| | || |||||||||||||| ||||| ||| |||| |||| ||||||||||| ||          
T  14979 ctttagggttgaatgtctttggtgagagtttattttttgggttgggaaacatttgtaaatacctttggtggtgagattttattattggaagcat-caaaa 14881  T
Q  118 nntcatttagtgttttctcttagggttca-tttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag-ttttaagc 211  Q
      || ||||||||||||||||||| |||| ||| |||||||| ||||| |||||||| ||||| || |||| || |||||||||||| ||||||||    
T  14880 actcctttagtgttttctcttaggattcactttgtgagtgtgggtgacttgaaaaataggtaggaactagggttagttctttgtgagcttttaagc 14785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 18674213 - 18674386
Alignment:
Q  30 gtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnnt-catttagt 128  Q
    |||||||||||||||||||| |||||| | || |||||||| |||||||||||| | ||||| |||||||||||| ||||||        | | |||| |    
T  18674213 gtgtctttggtgagagtttaattcttgggttgggaaacattcgtaaacaccttgagcagtgagatttcattattg-aaggatcaaaaagcttcctttaat 18674311  T
Q  129 gttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||| | |||||||||||||||| ||||| |||||||||| ||||||||| | |||||||||||||||    
T  18674312 gttttctcttatgattcatttatgagtgtgggtgacttgaaaaatggatagaaattatggtttgttctttgtgag 18674386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 28770572 - 28770768
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat-nn 113  Q
    ||||||||||||||||||||||||||||| |||| ||||||  | ||  |||||||||||||||||||||||||||| || ||||||   |||||||       
T  28770572 gaactttagggttgagtgtctttggtgagtgttt-tttctttggttggaaaacatttgtaaacaccttgggtagtgagatctcattagctgaaggataaa 28770670  T
Q  114 nnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag-ttttaagc 211  Q
          || ||||||||||||||||||| |||| ||  |||||||  |||| |||||||||||||||||||||  ||||||||||||||| ||||||||    
T  28770671 aaagtttcctttagtgttttctcttaggattca-ttgcgagtgtgtatgacttgaaaaatgggtagaaattagagtttgttctttgtgagcttttaagc 28770768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 12632980 - 12632890
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattgga 106  Q
    ||||||||||||||||||||||  ||||||||||||| ||| | |||||||||||||||||||||||||||  ||| |||| |||||||||    
T  12632980 aactttagggttgagtgtctttaatgagagtttatttattgggttgagaaacatttgtaaacaccttgggtgatgagattttattattgga 12632890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 16388344 - 16388261
Alignment:
Q  349 tgagactactttactctttgattactacttactttactctacacatctaagtttattggtttgattatttgtttgaattcacaa 432  Q
    ||||||||||||| || ||||||||||||| |||| ||| |||||||||||||||| ||| |||||||||||| ||||||||||    
T  16388344 tgagactactttattcattgattactactttctttgctccacacatctaagtttatcggtgtgattatttgttcgaattcacaa 16388261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 16388674 - 16388757
Alignment:
Q  349 tgagactactttactctttgattactacttactttactctacacatctaagtttattggtttgattatttgtttgaattcacaa 432  Q
    |||||||||||||||| ||||||||||||   ||| ||| |||||||||||||||||| | |||||||||||||||||||||||    
T  16388674 tgagactactttactcattgattactactatttttgctccacacatctaagtttattgatgtgattatttgtttgaattcacaa 16388757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 2869599 - 2869687
Alignment:
Q  124 ttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattagg-atttgttctttgtgag-ttttaagc 211  Q
    |||||||||||||||||| |||||| | ||||||| ||||| ||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  2869599 ttagtgttttctcttaggattcattga-gagtgtgggtgacttgaaaaatgggtagaaattaggtttttgttctttgtgagcttttaagc 2869687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 15903800 - 15903875
Alignment:
Q  127 gtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    |||||||||| |||| |||||| | ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||    
T  15903800 gtgttttctcataggattcattga-gagtgtgggtgacttgaaaaatgggtagaaattagaatttgttctttgtgag 15903875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 3278297 - 3278118
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat-nnn 114  Q
    |||||||||||||||| || ||| |||||| || |  |||| | ||  ||||||||||||||||||||| |||||| |||||||||| ||| ||||        
T  3278297 aactttagggttgagtatcgttgatgagagattct--cttgggttggaaaacatttgtaaacaccttggatagtgagatttcattataggacggatcaaa 3278200  T
Q  115 nnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctt 197  Q
         || ||||| |||||||||||||||||| || |||||||||||||  ||||||||| | ||||||  | ||||||||||    
T  3278199 aaacttcctttagcgttttctcttagggttca-ttgtgagtgtgagtgaattgaaaaatgagaagaaatcggaatttgttctt 3278118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 41586351 - 41586429
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaattt 96  Q
    |||||||||||||||||||||||||||||| |  | ||||| | ||  ||||| |||||||||||||||||||||| ||||    
T  41586351 aactttagggttgagtgtctttggtgagagct--tctcttgggttggaaaacagttgtaaacaccttgggtagtgagattt 41586429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 14698861 - 14698902
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  14698861 ttgtaaacaccttgggtagtgagatttcactattggaaggat 14698902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 23078323 - 23078364
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  23078323 ttgtaaacaccttgggtagtgagatttcatcattggaaggat 23078364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 2837936 - 2838015
Alignment:
Q  123 tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||||| |||||| |  || ||| ||||| ||||||||||| | |||||||| | |||||||||||||    
T  2837936 tttagtgttttctcttaggattcattgagaag-gtgggtgacatgaaaaatgggcaaaaattaggttgtgttctttgtgag 2838015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 36757563 - 36757655
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||||  | |||   || ||||| | || |||||||| |||||||||||||||||||| ||||||  |||||||||||    
T  36757563 aactttagggttgagtgtctttgtagtgagg--atctcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggat 36757655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 8040309 - 8040268
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  8040309 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 8040268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 10445319 - 10445360
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  10445319 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 10445360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 21630190 - 21630149
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  21630190 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 21630149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 34389096 - 34389055
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  34389096 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 34389055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 1631888 - 1631853
Alignment:
Q  167 gaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1631888 gaaaaatgggtagaaattagga-ttgttctttgtgag 1631853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 18674623 - 18674684
Alignment:
Q  366 ttgattactacttactttactctacacatctaagtttattggtttgattatttgtttgaattcaca 431  Q
    ||||||||||||| |||||||  |||||||||    ||||| | ||||||||||||||||||||||    
T  18674623 ttgattactactttctttacttcacacatcta----tattgatgtgattatttgtttgaattcaca 18674684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 35397694 - 35397628
Alignment:
Q  130 ttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
    |||||||||||| |||||| | || |||| ||||| |||||||||| ||||||||||| ||||||||||    
T  35397694 ttttctcttaggattcattga-gattgtgggtgacttgaaaaatggatagaaattagg-tttgttcttt 35397628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 30517922 - 30518112
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagtttatttcttgagatgag-aaacatttgtaaacaccttgggtagtgaa----atttcattattggaagg 109  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| || ||||||||||||| |  |||||||||||     |||||||||||||||||    
T  30517922 gaactttagagttgagtgtctttggtgagagtttatttctt-agattaggaaacatttgtaaatattttgggtagtgagtgagatttcattattggaagg 30518020  T
Q  110 atnnnnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtga 202  Q
    ||        || |||||||||||||| || | ||||||| |||||||| || || |||||||| ||||||||||| | ||||||||||||||    
T  30518021 atcaaaaacttcctttagtgttttctc-taagattcatttgtgagtgtgggtaacttgaaaaataggtagaaattaaggtttgttctttgtga 30518112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 33721404 - 33721548
Alignment:
Q  63 gaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnntca-tttagtgttttctcttagggttcatttatgagtgtgagt 161  Q
    |||||||||||||||||||| | |||||| ||||||||||||||| |||        ||  ||||||||||||||||||| |||||||| ||||||| ||    
T  33721404 gaaacatttgtaaacacctttg-tagtgagatttcattattggaatgatgaaaaagctccctttagtgttttctcttaggattcatttaggagtgtgtgt 33721502  T
Q  162 gacgtgaaaaatgggtagaaattaggatttgttctttgtgagtttt 207  Q
    ||| | |||||||||   |||||||| |||||||||| ||||||||    
T  33721503 gacctaaaaaatgggggaaaattaggttttgttctttatgagtttt 33721548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 31936820 - 31936695
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaa 169  Q
    |||||||||||||||||||||| ||||||  |||||||||||        |  ||| ||||||||||||||| |||||| | ||||||| ||||  ||||    
T  31936820 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttcttt-gtgttttctcttaggattcattga-gagtgtgggtgatatgaa 31936723  T
Q  170 aaatgggtagaaattaggatttgttctt 197  Q
    ||||||||||||||||||||||||||||    
T  31936722 aaatgggtagaaattaggatttgttctt 31936695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 31979808 - 31979631
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnn 115  Q
    |||||||||||||||||||||||  | ||| || |||  || | ||||||||||| |||||||||||||||||||| ||||||  |||||||||||        
T  31979808 aactttagggttgagtgtctttgtagtgaggttcttt--tgggttgagaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaa 31979712  T
Q  116 nnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
        || ||| ||||||||||||||| |||||| | ||||||| |||||   ||||||||||||||||||||  |||||||||    
T  31979711 agcttccttttgtgttttctcttaggattcattga-gagtgtgggtgac-acaaaaatgggtagaaattaggtcttgttcttt 31979631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 14521919 - 14521785
Alignment:
Q  70 ttgtaaacaccttgggtagtga-aatttcattattggaaggatnnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtg 167  Q
    |||||||||||||||||||||| |||||||  |||||||||||        | | |||| |||||||||||||| || ||| | ||||||| ||||| ||    
T  14521919 ttgtaaacaccttgggtagtgagaatttcaccattggaaggataaaaaatcttcctttaatgttttctcttaggatttattga-gagtgtgggtgacatg 14521821  T
Q  168 aaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||| |||||||||||| | |||||||||||||    
T  14521820 aaaaatgtgtagaaattaggttgtgttctttgtgag 14521785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 24435773 - 24435939
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat-nnn 114  Q
    ||||||||||||||||||||||| || ||| || |  |||||| || |||||||| |||||||||||||||||||| ||||||  |||||||||||        
T  24435773 aactttagggttgagtgtctttg-tgtgaggttct--cttgagttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaa 24435868  T
Q  115 nnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattagg 187  Q
         || ||| ||||||||||||||| |||| |||||| |||| ||||  | ||||||||||||||||||||    
T  24435869 aagcttccttttgtgttttctcttaggattca-ttatgaatgtgggtgatat-aaaaatgggtagaaattagg 24435939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 21801196 - 21801323
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat-nnnnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  |||||||||||         || ||| |||||||||||||||||||||||  ||||||| |||||        
T  21801196 ttgtaaacaccttgggtagtgagatttcaacattggaaggatcaaaaagcttccttttgtgttttctcttagggttcatttgagagtgtgggtgac--ac 21801293  T
Q  169 aaaatgggtagaaattaggatttgttcttt 198  Q
    ||||||||||||||||| |  |||||||||    
T  21801294 aaaatgggtagaaattaagtcttgttcttt 21801323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 437
Target Start/End: Complemental strand, 99055 - 98967
Alignment:
Q  351 agactactttactctttgattactacttactttactctacacatctaag-tttattggtttga-ttatttgtttgaattcacaataaaa 437  Q
    |||||||||| ||| ||||||||||||| |||||||| |||| | |||| ||||||||  ||| ||||||| | |||||||||||||||    
T  99055 agactactttgctcattgattactacttcctttactccacacgtttaagttttattggcgtgatttatttgctcgaattcacaataaaa 98967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 5572095 - 5572219
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaa 169  Q
    |||||||||||||||||||||| |||||| |||||||| |||        || ||| ||||||||||||||| |||||| | ||||||| |||||    |    
T  5572095 ttgtaaacaccttgggtagtgagatttcactattggaatgatcaaaagcttccttttgtgttttctcttaggattcattga-gagtgtgggtgac--aca 5572191  T
Q  170 aaatgggtagaaattaggatttgttctt 197  Q
    ||||| ||||||||||||  ||||||||    
T  5572192 aaatgcgtagaaattaggtcttgttctt 5572219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 18233091 - 18232964
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnntcatttagtgttttctcttagggttcat--ttatgagtgtgagtgacgtg 167  Q
    |||||||||||||||||||||| ||||||  |||||||||||        || ||| ||||||||||||||| |||||  ||  ||||||| |||||       
T  18233091 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaagcttccttttgtgttttctcttaggattcattattgagagtgtgggtgac--a 18232994  T
Q  168 aaaaatgggtagaaattaggatttgttctt 197  Q
     |||||||||||||||||||  ||||||||    
T  18232993 caaaatgggtagaaattaggtcttgttctt 18232964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 16569047 - 16569081
Alignment:
Q  169 aaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||||| |||||||||||||||    
T  16569047 aaaatgggtagaaattaggttttgttctttgtgag 16569081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 21356282 - 21356244
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaag 108  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  21356282 ttgtaaacaccttgggtagtgagatttcatcattggaag 21356244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 5757330 - 5757371
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  5757330 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 5757371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 22963944 - 22963903
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  22963944 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 22963903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 23824449 - 23824490
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  23824449 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 23824490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 1114895 - 1114931
Alignment:
Q  12 agagaactttagggttgagtgtctttggtgagagttt 48  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  1114895 agagaactttatggttgagagtctttggtgagagttt 1114931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 1115037 - 1115089
Alignment:
Q  151 tgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    |||||||| ||||| |||||||||| ||||||||||| |||||| ||| ||||    
T  1115037 tgagtgtgggtgacttgaaaaatggatagaaattagggtttgttatttttgag 1115089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 30519222 - 30519294
Alignment:
Q  349 tgagactactttactctttgattactacttactttactctacacatctaagtttattggtttgattatttgtt 421  Q
    |||||||| |||  || |||||||||| || |||| ||| |||||| ||| ||||||||| ||||||||||||    
T  30519222 tgagactattttgatcattgattactattttctttgctccacacatttaaatttattggtatgattatttgtt 30519294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 25116498 - 25116690
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacacctt-gggtagtgaaatttcattattggaagga-tn 112  Q
    ||||||||| ||||||||||||| |||||||||||||| ||| | || ||||||||||||||||| || ||||||||| ||||||||||| |||||| |     
T  25116498 gaactttagagttgagtgtcttttgtgagagtttatttattgggttgggaaacatttgtaaacacattagggtagtgagatttcattatttgaaggatta 25116597  T
Q  113 nnnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgagtttt 207  Q
           |  ||||||||||||||||| | || |||||||||||||  |||| ||||||  ||||| ||||||||  || |||||||||||||||    
T  25116598 aaaaaatttctttagtgttttctcttaagatttatttatgagtgtggatgacttgaaaa--gggtaaaaattaggggttcttctttgtgagtttt 25116690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 32889734 - 32889558
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnn 115  Q
    |||||||||||||||||||||||  | ||| || |||  || | || |||||||| |||||||||||||||||||| ||||||  ||||||||| |        
T  32889734 aactttagggttgagtgtctttgtagtgaggtttttt--tgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggttcaaa 32889638  T
Q  116 nnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctt 197  Q
        || ||| ||||||||||||||| |||||| | ||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  32889637 agcttctttt-gtgttttctcttaggattcattga-gagtgtgggtgatatgaaaaatgggtagaaattaggacttgttctt 32889558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 8281219 - 8281135
Alignment:
Q  349 tgagactactttactctttgattactacttactttactctacacatctaagtt-tattggtttgattatttgtttgaattcacaa 432  Q
    ||||||||||||| || |||||||||| || ||||| |||||||||||||||| ||||||| | |||||| ||||||||||||||    
T  8281219 tgagactactttattcattgattactatttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaa 8281135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 8281620 - 8281430
Alignment:
Q  12 agagaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    ||||||||||||||||| |  |||||| ||||||||| ||||||| | || ||| ||||||||||||||||||||||||| || ||||||  ||||| ||    
T  8281620 agagaactttagggttgggcatctttgatgagagttt-tttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaat 8281522  T
Q  112 -nnnnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
             || |||||||||||||||| || |||| || |||||| | ||||| | || ||| | |||||||||| ||||||||||||||||    
T  8281521 aaaaaaacttcctttagtgttttctctttggattca-ttgtgagtgcgggtgacttaaataattgatagaaattagaatttgttctttgtgag 8281430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 10996856 - 10996772
Alignment:
Q  349 tgagactactttactctttgattactacttactttactctacacatctaag-tttattggtttgattatttgtttgaattcacaa 432  Q
    |||| |||||||| || ||||||||||||| |||||||||||| || |||| ||||||||| ||||| |||||| ||||||||||    
T  10996856 tgaggctactttattcattgattactactttctttactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaa 10996772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 47098626 - 47098804
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnn 115  Q
    |||||||||||||||||||||||  | ||| || |  |||| | || |||||||| |||||||||||||||||||| ||||||  |||||||||||        
T  47098626 aactttagggttgagtgtctttgtagcgaggttct--cttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaa 47098722  T
Q  116 nnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
        | | ||| ||||||| ||||||| |||||| | ||||||| |||| ||||||| |||||||||||||||| |||||||||    
T  47098723 aagcttccttttgtgttttttcttaggtttcattga-gagtgtgggtgatgtgaaaa-tgggtagaaattaggacttgttcttt 47098804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 47102640 - 47102821
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat-nnn 114  Q
    |||||||||||||||||||||||  | ||| || |  |||| | || |||||||| |||||||||||||||||||| ||||||| |||||||||||        
T  47102640 aactttagggttgagtgtctttgtagtgaggttct--cttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcatcattggaaggatcaaa 47102736  T
Q  115 nnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatggg--tagaaattaggatttgttcttt 198  Q
         |  ||| ||||||| ||||||| |||||| | ||||||||||||  |||||||||||  |||||||||||| |||||||||    
T  47102737 aagctttcttttgtgttttttcttaggattcattga-gagtgtgagtgatatgaaaaatgggtatagaaattaggacttgttcttt 47102821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 17345429 - 17345502
Alignment:
Q  127 gtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtg 201  Q
    ||||||||||||| | |||||| | ||||||| ||||| | |||||||||||||||||||| |||||||||||||    
T  17345429 gtgttttctcttaagattcattaa-gagtgtgggtgacttaaaaaatgggtagaaattaggttttgttctttgtg 17345502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 19073173 - 19073046
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    ||||||||||||||| |||||| ||||||  |||||||||||        | | ||| |||||||||||||||||||||||  |||||||||||||        
T  19073173 ttgtaaacaccttggatagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttagggttcatttgagagtgtgagtgac--ac 19073076  T
Q  169 aaaatgggtagaaattaggatttgttcttt 198  Q
    |||||||||||||||||||  |||||||||    
T  19073075 aaaatgggtagaaattaggtattgttcttt 19073046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 19121063 - 19120936
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    ||||||||||||||| |||||| ||||||  |||||||||||        | | ||| |||||||||||||||||||||||  |||||||||||||        
T  19121063 ttgtaaacaccttggatagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttagggttcatttgagagtgtgagtgac--ac 19120966  T
Q  169 aaaatgggtagaaattaggatttgttcttt 198  Q
    |||||||||||||||||||  |||||||||    
T  19120965 aaaatgggtagaaattaggtattgttcttt 19120936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 35109443 - 35109531
Alignment:
Q  123 tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag-ttttaagc 211  Q
    |||||| ||||||| |||| ||||||  |||||||| ||||| |||||| ||||||||||||| | ||||||||||||||| ||||||||    
T  35109443 tttagtattttctcgtaggattcattg-tgagtgtgtgtgacttgaaaattgggtagaaattaaggtttgttctttgtgagcttttaagc 35109531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 32736902 - 32736976
Alignment:
Q  123 tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
    ||||| ||||||||||||| ||||||  |||||||   |||| |||||||||||||||||||||| ||||||||||    
T  32736902 tttagggttttctcttaggattcattg-tgagtgtcgatgacttgaaaaatgggtagaaattagggtttgttcttt 32736976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 35109745 - 35109811
Alignment:
Q  366 ttgattactacttactttactctacacatctaag-tttattggtttgatta-tttgtttgaattcac 430  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||| |||||| |||||| ||||||||    
T  35109745 ttgattactacttcctttcctctacacatctaagttttattggtgtgattattttgttcgaattcac 35109811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 11032268 - 11032309
Alignment:
Q  166 tgaaaaatgggtagaaattaggatttgttctttgtgagtttt 207  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  11032268 tgaaaaatgggtagaaattatgttttgttctttgtgagtttt 11032309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 918428 - 918468
Alignment:
Q  166 tgaaaaatgggtagaaattaggatttgttctttgtgagttt 206  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  918428 tgaaaaatgggtagaaattatggtttgttctttgtgagttt 918468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 3019921 - 3019839
Alignment:
Q  123 tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgagttt 206  Q
    |||| |||||||| | ||| ||||||| || || |||||||| |||||||| |||||||||||| |  ||||||||||||||||    
T  3019921 tttattgttttctatcaggattcattt-tgggtttgagtgacttgaaaaattggtagaaattagaaaatgttctttgtgagttt 3019839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 3281952 - 3281911
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  3281952 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 3281911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 10997120 - 10997071
Alignment:
Q  151 tgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgt 200  Q
    |||||| | ||||| |||||||||||||||||||||| |||||| |||||    
T  10997120 tgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgt 10997071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 10997263 - 10997173
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagttt----atttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcatta 101  Q
    |||||||| || ||||||| | ||||||||||||    |||||||  | || ||||||||| |||||||||||| ||||||||| ||||||    
T  10997263 gaactttaaggctgagtgtatgtggtgagagtttcttaatttcttaggttgggaaacatttttaaacaccttggatagtgaaatgtcatta 10997173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 11031320 - 11031366
Alignment:
Q  63 gaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||| |||||||||  | |||||||||||||||||    
T  11031320 gaaacatttgtaaacaccgtgggtagtg--agttcattattggaaggat 11031366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 13598645 - 13598604
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  13598645 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 13598604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 13604474 - 13604515
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  13604474 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 13604515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 16124366 - 16124407
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  16124366 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 16124407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 19358693 - 19358734
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  19358693 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 19358734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 19361282 - 19361323
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  19361282 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 19361323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 19366158 - 19366199
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  19366158 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 19366199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 19379922 - 19379963
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  19379922 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 19379963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 22819613 - 22819541
Alignment:
Q  130 ttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    |||||||||||| |||||| | ||||||| ||||| |||||||||| ||||||||| |  || |||||||||||    
T  22819613 ttttctcttaggattcattga-gagtgtgggtgacttgaaaaatggttagaaattatgtcttattctttgtgag 22819541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 29652058 - 29652017
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  29652058 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 29652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 40816668 - 40816709
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  40816668 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 40816709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 31513135 - 31513314
Alignment:
Q  20 ttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnn 119  Q
    ||||||| ||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||  |||||| |||||||||  ||||||||            
T  31513135 ttagggtcgagtgtcttcgatgagagtttatttcttgggttgagaaacatttgtaaacaccttgaatagtgagatttcattagaggaaggataaaaaaaa 31513234  T
Q  120 tcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtga 202  Q
       ||||||||||||||||||| |||| || ||||||||  |||| |  ||||| ||||||||||||| ||||||||||||||    
T  31513235 atctttagtgttttctcttaggattca-ttgtgagtgtggatgac-tcgaaaataggtagaaattagg-tttgttctttgtga 31513314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 8863425 - 8863604
Alignment:
Q  14 agaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnn 113  Q
    ||||||||| | ||||||||||| ||||| | ||||||||||  | |  |||||| |||||||||| |||| |||||| |||||||||||   |||||      
T  8863425 agaactttaagtttgagtgtcttcggtgaaaatttatttcttaggctaggaaacagttgtaaacacattggttagtgagatttcattatt---aggatta 8863521  T
Q  114 nnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttct 196  Q
          || |||| |||||||||||  | |||||||||| ||||||||||| |||||||||||||||||||| | ||||||||    
T  8863522 aaatcttcctttaatgttttctctttagattcatttatgtgtgtgagtgacttgaaaaatgggtagaaattaaggtttgttct 8863604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 19752246 - 19752372
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaa 169  Q
    |||||||||||||||||||||| ||||||| |||||||||||        |   || ||||||||||||||| |||||| | ||||||| ||||  ||||    
T  19752246 ttgtaaacaccttgggtagtgagatttcatcattggaaggatcaaaaagcttcctttgtgttttctcttaggattcattga-gagtgtgggtgatatgaa 19752344  T
Q  170 aaatgggtagaaattaggatttgttctt 197  Q
    ||||||||||||||||||| ||||||||    
T  19752345 aaatgggtagaaattaggacttgttctt 19752372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 3051420 - 3051232
Alignment:
Q  12 agagaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||||||||  | | | || |  |||||| || |||||||| ||||||| |||||||||||| ||||||  ||||||| |||    
T  3051420 agagaactttagggttgagtgtctttgtagtggggttct--cttgagttgggaaacatt-gtaaacatcttgggtagtgagatttcaccattggaaagat 3051324  T
Q  112 nnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
            | | ||| ||| ||||||||||| |||||| | |||||| |||||| |||||||||||||||||||| | |||||||||||||||    
T  3051323 caaaaagcttccttttgtgctttctcttaggattcattga-gagtgtaagtgacatgaaaaatgggtagaaattaagttttgttctttgtgag 3051232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 9054748 - 9054820
Alignment:
Q  128 tgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtg 201  Q
    |||||||||||||| |||||| | ||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  9054748 tgttttctcttaggattcattga-gagtgtgagtgacttgaaaaatgggtagaaattagattttgttctttgtg 9054820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 6813845 - 6813795
Alignment:
Q  154 gtgtgagtgacgtgaaaaatgggtag-aaattaggatttgttctttgtgag 203  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  6813845 gtgtgagtgacttgaaaaatgggtagaaaattaggttttgttctttgtgag 6813795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 7493025 - 7493158
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  ||| |||||||        | | ||||||||||| ||||||| || ||| | ||||||| ||||| |||    
T  7493025 ttgtaaacaccttgggtagtgagatttcacaattagaaggatcaaaaagcttcctttagtgttttttcttaggatttattga-gagtgtgggtgacttga 7493123  T
Q  169 aaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||  ||||||||||||| |||||||| ||||||    
T  7493124 aaaacaggtagaaattaggttttgttctgtgtgag 7493158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 19175606 - 19175647
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  19175606 ttgtaaacaccttgggtagtgagatttcactattggaaggat 19175647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 7412636 - 7412544
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||||  |||||   || ||||| | || |||||| |||||||||||||||||||||| ||||||  |||| ||||||    
T  7412636 aactttagggttgagtgtctttgtagagag--gatctcttgggttgggaaaca-ttgtaaacaccttgggtagtgagatttcaccattgaaaggat 7412544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 30291620 - 30291654
Alignment:
Q  169 aaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||||| |||||||||||||||    
T  30291620 aaaatgggtagaaattaggttttgttctttgtgag 30291654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 5990467 - 5990555
Alignment:
Q  123 tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag-ttttaagc 211  Q
    ||||||||||||||||||| |||||| |  |||||| ||||| ||||||||||||  |||| |||   ||||||||||||| ||||||||    
T  5990467 tttagtgttttctcttaggattcattga-aagtgtgggtgacttgaaaaatgggtgaaaatgaggtcgtgttctttgtgagcttttaagc 5990555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 11712266 - 11712237
Alignment:
Q  16 aactttagggttgagtgtctttggtgagag 45  Q
    ||||||||||||||||||||||||||||||    
T  11712266 aactttagggttgagtgtctttggtgagag 11712237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 26288137 - 26288096
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  26288137 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 26288096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 26301394 - 26301353
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  26301394 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 26301353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 26313388 - 26313347
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  26313388 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 26313347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 26403081 - 26403122
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  26403081 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 26403122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 31071079 - 31071120
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  31071079 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 31071120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 42093128 - 42093168
Alignment:
Q  166 tgaaaaatgggtagaaattaggatttgttctttgtgagttt 206  Q
    |||||||| ||||||||||| ||| ||||||||||||||||    
T  42093128 tgaaaaataggtagaaattatgatatgttctttgtgagttt 42093168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 23402814 - 23402993
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnn 115  Q
    |||||||||||||||||||||||  | ||| || |  |||| | || |||||||| |||||||||||||||||||| ||||||  ||||||| |||        
T  23402814 aactttagggttgagtgtctttgtagtgaggttct--cttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaatgatcaaa 23402910  T
Q  116 nnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
        | | ||| ||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| |||||||||    
T  23402911 aagcttccttttgtgttttctcttaggattcattga-gagtgtgagtgatgtgaaaaatgggtagaaattaggacttgttcttt 23402993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 5817180 - 5817255
Alignment:
Q  127 gtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||| ||||||| |||||| | ||||||||||||| |||||||||| ||||||||||| |||||||||||||||    
T  5817180 gtgttttttcttaggattcattga-gagtgtgagtgacttgaaaaatggatagaaattaggttttgttctttgtgag 5817255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 20284385 - 20284206
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnn 115  Q
    |||||||||||||||||||||||  | ||| || |  |||| | || |||||||| |||||||||||||||||||| ||||||  |||||||||||        
T  20284385 aactttagggttgagtgtctttgtagtgaggttct--cttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaa 20284289  T
Q  116 nnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
        | | ||| ||||||||||||||| |||||| | ||||||| ||||  ||||||| ||||||||||||||| |||||||||    
T  20284288 aagcttccttttgtgttttctcttaggattcattga-gagtgtgggtgatatgaaaaaagggtagaaattaggacttgttcttt 20284206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 9185026 - 9185153
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  |||||||||||        | | ||  ||||||||||||||| |||||| | ||||||| ||||  |||    
T  9185026 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttgtgtgttttctcttaggattcattaa-gagtgtgggtgatatga 9185124  T
Q  169 aaaatgggtagaaattaggatttgttctt 197  Q
    |||||||||||||||||||| ||||||||    
T  9185125 aaaatgggtagaaattaggacttgttctt 9185153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 9189859 - 9189986
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  |||||||||||        | | ||  ||||||||||||||| |||||| | ||||||| ||||  |||    
T  9189859 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttgtgtgttttctcttaggattcattaa-gagtgtgggtgatatga 9189957  T
Q  169 aaaatgggtagaaattaggatttgttctt 197  Q
    |||||||||||||||||||| ||||||||    
T  9189958 aaaatgggtagaaattaggacttgttctt 9189986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 27984747 - 27984678
Alignment:
Q  12 agagaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacacctt 82  Q
    |||||||||||||  || ||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||    
T  27984747 agagaactttaggactgggtgtctttggtgagagttt-tttcttgggatgagaaatatttgtaaaaacctt 27984678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 2580635 - 2580508
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  |||| ||||||        | | ||| ||||||||||||||| |||||| | ||||||| ||||  |||    
T  2580635 ttgtaaacaccttgggtagtgagatttcaccattgaaaggatcaaaaagcttccttttgtgttttctcttaggattcattga-gagtgtgggtgatatga 2580537  T
Q  169 aaaatgggtagaaattaggatttgttctt 197  Q
    |||||||||||||| ||||| ||||||||    
T  2580536 aaaatgggtagaaactaggacttgttctt 2580508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 46516106 - 46516198
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||||  | |||   || ||||||| || |||||||| |||||||||||||||||||| ||||||  |||||||||||    
T  46516106 aactttagggttgagtgtctttgtagtgagg--atctcttgagttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggat 46516198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 28617334 - 28617378
Alignment:
Q  257 tttcttcctctcttaattatctttgttgctttgaatatgcttgtg 301  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||    
T  28617334 tttcttcctttcttgcttatctttgttgctttgaatatgcttgtg 28617378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 9235492 - 9235562
Alignment:
Q  127 gtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
    ||||||||||||||| ||| || | ||||| | ||||  ||||||||||||||||||||||| |||||||||    
T  9235492 gtgttttctcttaggattcgttga-gagtgcgggtgatatgaaaaatgggtagaaattaggacttgttcttt 9235562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 24526051 - 24526017
Alignment:
Q  169 aaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||||| |||||||||||||||    
T  24526051 aaaatgggtagaaattaggttttgttctttgtgag 24526017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 28617173 - 28617219
Alignment:
Q  166 tgaaaaatgggtagaaattaggatttgttctttgtgag-ttttaagc 211  Q
    |||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  28617173 tgaaaaataggtagaaattaggttttgttctttgtgagcttttaagc 28617219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 56194 - 56153
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  56194 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 56153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 2479581 - 2479540
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  2479581 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 2479540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 4162699 - 4162756
Alignment:
Q  148 ttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgagtt 205  Q
    ||||| || ||| |||| ||||||||  |||||||||| |||||||||||||||||||    
T  4162699 ttatgggtttgaatgacttgaaaaataagtagaaattatgatttgttctttgtgagtt 4162756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 4796520 - 4796561
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  4796520 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 4796561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 21640055 - 21640014
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  21640055 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 21640014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 21646253 - 21646212
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  21646253 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 21646212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 21983531 - 21983490
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  21983531 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 21983490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 29160050 - 29160009
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  29160050 ttgtaaacaccttgggtagtgagatttcaacattggaaggat 29160009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 3047441 - 3047367
Alignment:
Q  127 gtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||| ||||| | |||||| | ||||||| ||||| | ||||||||||||||||||||  ||||||||||||||    
T  3047441 gtgttttatcttaagattcattga-gagtgtgggtgactt-aaaaatgggtagaaattaggtcttgttctttgtgag 3047367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 18413884 - 18413844
Alignment:
Q  71 tgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  18413884 tgtaaacaccttgggtagtgagatttcaccattggaaggat 18413844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 102292 - 102479
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnn 114  Q
    ||||||||| ||||||||| |||||||||| ||||||||| | | ||  ||||||||| |||||||||||  ||| | |||| ||||  ||||||||       
T  102292 gaactttagtgttgagtgt-tttggtgagattttatttctagggttggaaaacatttgaaaacaccttggtaagtaagattttattagaggaaggatcaa 102390  T
Q  115 nnnnn-tcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
          || |||||||||||||||| |  || ||| ||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||    
T  102391 aaagcatcctttagtgttttctcttcgaatttatt-atgagtgtgtgtgacttgaaaaatgggtagaaattagggtttgttttttgtgag 102479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 2630530 - 2630339
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnn 114  Q
    |||||||| ||||||| || |||||||||||||||||| ||  | | ||||||||||| ||||| ||| | |||||||||||||  |||| ||||||       
T  2630530 gaactttatggttgagagt-tttggtgagagtttatttatttggttaagaaacatttgcaaacatctttgatagtgaaatttcaccattgaaaggatcaa 2630432  T
Q  115 nnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgagtttt 207  Q
         | | ||||||||||||||||||| ||||||  |||||| | ||||| |||||||||  || |||||||| ||||||||||||| |||||    
T  2630431 aaagcttcctttagtgttttctcttaggattcattg-tgagtgagggtgacttgaaaaatgtataaaaattaggttttgttctttgtgtgtttt 2630339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 33030854 - 33030934
Alignment:
Q  131 tttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag-ttttaagc 211  Q
    ||||||||||| |||||| | ||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||    
T  33030854 tttctcttaggattcattga-gagtgtgagtgacttgaaaaatgggtagaaattatgttttgttctttgtgagcttttaagc 33030934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 6742039 - 6741961
Alignment:
Q  127 gtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgagttt 206  Q
    ||||||| ||||||| |||||| | ||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  6742039 gtgttttttcttaggattcattga-gagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagttt 6741961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 31300396 - 31300574
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnn 115  Q
    ||||||| |||||||||||||||  | ||| || |  |||| | ||||||||||| |||||||||||||||||||| ||||||  |||||||||||        
T  31300396 aactttaaggttgagtgtctttgtagtgaggttct--cttgggttgagaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaa 31300492  T
Q  116 nnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctt 197  Q
        | | ||| ||||||||||||||| |||||| | ||||||| ||||  ||| ||||||||||||||||||| ||||||||    
T  31300493 aggcttccttttgtgttttctcttaggattcattga-gagtgtgggtgatatgagaaatgggtagaaattaggacttgttctt 31300574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 28832502 - 28832374
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnnt-catttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||| ||||||  |||||||||||        | | ||| ||||||||||||||| |||||| | ||||||| ||||  |||    
T  28832502 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattga-gagtgtgggtgatatga 28832404  T
Q  169 aaaatgggtagaaattaggatttgttcttt 198  Q
    |||||||||||||||||| | |||||||||    
T  28832403 aaaatgggtagaaattagaacttgttcttt 28832374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 34842500 - 34842436
Alignment:
Q  349 tgagactactttactctttgattactacttactttactctacacatctaagtttattggtttgatt 414  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||    
T  34842500 tgaggctactttactctt-gattactacttcctttactccacacatctaagtttattggtgtgatt 34842436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 3651686 - 3651613
Alignment:
Q  128 tgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtga 202  Q
    |||||| ||||||| |||||| ||  || |||||||| |||||||||||||||||||||| ||||||||||||||    
T  3651686 tgttttatcttaggattcatt-ataggtttgagtgacttgaaaaatgggtagaaattagggtttgttctttgtga 3651613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 11181684 - 11181800
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat-nnnnnnnntcatttagtgttttctcttagggttcatttatgagtgtgagtgacgtga 168  Q
    |||||||||||||||||||||||||||||  |||||||||||         || ||| ||||||||||||||| |||| || |||||||| ||||| ||     
T  11181684 ttgtaaacaccttgggtagtgaaatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattca-ttgtgagtgtgggtgacatg- 11181781  T
Q  169 aaaatgggtagaaattagg 187  Q
    |||||||||||||||||||    
T  11181782 aaaatgggtagaaattagg 11181800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 3325821 - 3325885
Alignment:
Q  19 tttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggt 86  Q
    |||||||| |||||||||||||||| |||    ||||||| |||||||||||||||||||||||||||    
T  3325821 tttagggtcgagtgtctttggtgagtgttc---tcttgagttgagaaacatttgtaaacaccttgggt 3325885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 42127320 - 42127390
Alignment:
Q  127 gtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttcttt 198  Q
    ||||||||||||||| |||||| | ||||||| ||||  ||||||||||||||||| ||||| |||||||||    
T  42127320 gtgttttctcttaggattcattga-gagtgtgggtgatatgaaaaatgggtagaaagtaggacttgttcttt 42127390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 11916824 - 11916901
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggatnnnnnnnntcatttagtgttttctcttagggttcat 147  Q
    |||||||||||||||||||||| ||||||  |||||||||||        || ||| |||||||||||||||||||||    
T  11916824 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaacttccttttgtgttttctcttagggttcat 11916901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 30900161 - 30900070
Alignment:
Q  16 aactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||| ||| ||||| | ||||  |||||| ||   ||||||| ||||||||||||||||||| |||||||||  ||||||||    
T  30900161 aactttagggttgagtgtattttgtgaggggttat--cttgagttgg--aacatttataaacaccttgggtagtgagatttcattagaggaaggat 30900070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 5611333 - 5611255
Alignment:
Q  123 tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtga 202  Q
    |||||||||||||||||||  ||||||||||||||   |||| | |||||||| ||||||| ||  ||||||||||||||    
T  5611333 tttagtgttttctcttaggaatcatttatgagtgtttatgac-ttaaaaatggatagaaataagattttgttctttgtga 5611255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 9353184 - 9353225
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  9353184 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 9353225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 10281997 - 10281956
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  10281997 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 10281956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 17003811 - 17003852
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  17003811 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 17003852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 31182986 - 31183022
Alignment:
Q  169 aaaatgggtagaaattaggatttgttctttgtgagttt 206  Q
    |||||||||||||||||||| |||||||||||||||||    
T  31182986 aaaatgggtagaaattagga-ttgttctttgtgagttt 31183022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 36932200 - 36932241
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  36932200 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 36932241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 38219645 - 38219604
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  38219645 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 38219604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 5611142 - 5611094
Alignment:
Q  246 tggtgtgttggtttcttcctctcttaattatctttgttgctttgaatat 294  Q
    |||||||||| ||||||||  ||||  ||||||||||||||||||||||    
T  5611142 tggtgtgttgttttcttcccttctttcttatctttgttgctttgaatat 5611094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 19806395 - 19806432
Alignment:
Q  167 gaaaaatgggtagaaattaggatttgttctttgtgagttt 206  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  19806395 gaaaaatgggtagaaattagg--ttgttctttgtgagttt 19806432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 33831692 - 33831727
Alignment:
Q  167 gaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    ||||||||||||||||||||| |||||||||||||||    
T  33831692 gaaaaatgggtagaaattagg-tttgttctttgtgag 33831727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 34842759 - 34842715
Alignment:
Q  159 agtgacgtgaaaaatgggtagaaattaggatttgttctttgtgag 203  Q
    |||||| ||||||||| |||||||||||||| ||||||| |||||    
T  34842759 agtgacttgaaaaatgagtagaaattaggatatgttcttggtgag 34842715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 8217 - 8310
Alignment:
Q  15 gaactttagggttgagtgtctttggtgagagtttatttcttgagatgagaaacatttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    ||||||||||||||||||||||||  | |||   || ||||| | || |||||||| |||||||||||||||||||| ||||||  |||||||||||    
T  8217 gaactttagggttgagtgtctttgtagtgagg--atctcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggat 8310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 10976 - 10935
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  10976 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 10935  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 45443 - 45402
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  45443 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 45402  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 36684 - 36725
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  36684 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 36725  T

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Target: scaffold0087; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 43813 - 43854
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  43813 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 43854  T

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Target: scaffold0076 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 15895 - 15977
Alignment:
Q  123 tttagtgttttctcttagggttcatttatgagtgtgagtgacgtgaaaaatgggtagaaattaggatttgttctttgtgagtttt 207  Q
    |||||||| |||| ||||  ||||||||||||||||  ||||  ||||||||||   |||||||| ||||||||||||| |||||    
T  15895 tttagtgtcttcttttagaattcatttatgagtgtg--tgaccagaaaaatgggggaaaattaggttttgttctttgtgggtttt 15977  T

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Target: scaffold0076; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 432
Target Start/End: Original strand, 16190 - 16263
Alignment:
Q  360 tactctttgattactacttactttactctacacatctaag-tttattggtttgattatttgtttgaattcacaa 432  Q
    ||||| ||||||||||||| |||| ||| ||||||||||| ||||||||| | |||||| |||  |||||||||    
T  16190 tactcattgattactacttcctttgctcgacacatctaagttttattggtgtaattattagttcaaattcacaa 16263  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 5930 - 5889
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  5930 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 5889  T

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Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 133131 - 133172
Alignment:
Q  70 ttgtaaacaccttgggtagtgaaatttcattattggaaggat 111  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  133131 ttgtaaacaccttgggtagtgagatttcaccattggaaggat 133172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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