View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_low_11 (Length: 471)

Name: NF11109_low_11
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_low_11
NF11109_low_11
[»] chr1 (12 HSPs)
chr1 (47-385)||(1863528-1863855)
chr1 (318-385)||(1836792-1836859)
chr1 (383-447)||(44291298-44291365)
chr1 (389-447)||(17088621-17088682)
chr1 (386-444)||(17641854-17641915)
chr1 (389-447)||(29021347-29021408)
chr1 (390-447)||(25274760-25274820)
chr1 (388-445)||(45048619-45048679)
chr1 (389-444)||(2868193-2868251)
chr1 (393-444)||(23526665-23526719)
chr1 (388-447)||(39485067-39485129)
chr1 (389-444)||(50304442-50304500)
[»] chr2 (2 HSPs)
chr2 (389-447)||(31797259-31797320)
chr2 (389-444)||(42192243-42192301)
[»] scaffold1432 (1 HSPs)
scaffold1432 (389-447)||(547-608)
[»] chr4 (4 HSPs)
chr4 (389-447)||(24335764-24335825)
chr4 (389-447)||(24336245-24336306)
chr4 (389-447)||(23986523-23986584)
chr4 (388-447)||(229641-229703)
[»] chr3 (8 HSPs)
chr3 (389-447)||(49407799-49407860)
chr3 (388-444)||(40838654-40838713)
chr3 (388-447)||(27199704-27199766)
chr3 (389-447)||(36701578-36701639)
chr3 (383-444)||(40839137-40839201)
chr3 (389-444)||(40275096-40275154)
chr3 (389-444)||(52237302-52237360)
chr3 (389-444)||(52375330-52375388)
[»] chr5 (3 HSPs)
chr5 (389-444)||(15115577-15115635)
chr5 (389-446)||(41834542-41834602)
chr5 (389-447)||(13556998-13557056)
[»] scaffold0007 (2 HSPs)
scaffold0007 (389-447)||(205849-205910)
scaffold0007 (389-447)||(210819-210880)
[»] chr7 (3 HSPs)
chr7 (389-447)||(49064202-49064263)
chr7 (389-444)||(34595257-34595315)
chr7 (389-444)||(39137018-39137076)
[»] chr8 (1 HSPs)
chr8 (388-447)||(28877371-28877433)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 47 - 385
Target Start/End: Original strand, 1863528 - 1863855
Alignment:
Q  47 tcaaacgaatcgattgaattatcaaaaataatttcacaaaactaatggaataaaatcattttgcacaatttatttattagcttacgattaaattaatagt 146  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1863528 tcaaacgaatcgattgaattatcagaaataatttcacaaaactaatggaataaaatcattttgcacaatttatttattagcttacgattaaattaatagt 1863627  T
Q  147 tcaacttattcttctcacttaatagtgacaagaagtagtgtacacatcacatttagctatcatgagagaataaaatcaatattcctagatattacccgtt 246  Q
    |||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1863628 tcaacttattcttctcacttaatagtgacaa-----------cacatcacatttagctatcatgagagaacaaaatcaatattcctagatattacccgtt 1863716  T
Q  247 gactgaaaaagaaaatattaagtcttcgtcaagcataagtcatacataaatttaaggatccaattaatagttcaacttaatcttctcactaagaatgcca 346  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1863717 gactgaaaaagaatatattaagtcttcgtcaagcataagtcatacataaatttaaggatccaattaatagttcaacttaatcttctcactaagaatgcca 1863816  T
Q  347 agtagtgccgtctagattccgccacaaatataaaacttt 385  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  1863817 agtagtgccgtctagattgggccacaaatataaaacttt 1863855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 1836792 - 1836859
Alignment:
Q  318 tcaacttaatcttctcactaagaatgccaagtagtgccgtctagattccgccacaaatataaaacttt 385  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||   |||| |||||| |||||||    
T  1836792 tcaacttaatcttctcactcagaatgccaagtaatgtcgtctagatcgagccataaatatcaaacttt 1836859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 447
Target Start/End: Original strand, 44291298 - 44291365
Alignment:
Q  383 tttgatttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    ||||| |||||| |||||| | ||||||||||||||||   ||||||||||||| |||||||||||||    
T  44291298 tttgacttaattgcacttttggtcctcacattttgaccagctcacgaaaatggttatgcctctttcaa 44291365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 17088682 - 17088621
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||||||||| | ||||| |||||||| |   |||||||||||||||||||||||||||    
T  17088682 ttaattacacttttggtcctctcattttgaacagctcacgaaaatggtcatgcctctttcaa 17088621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 17641915 - 17641854
Alignment:
Q  386 gatttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctcttt 444  Q
    |||||||||||||||| | ||||| |||||||||   ||||||||||||||||| |||||||    
T  17641915 gatttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcatacctcttt 17641854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 29021408 - 29021347
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    |||||| |||||| | ||||||||||||||||   ||||||||||| |||||||||||||||    
T  29021408 ttaattgcacttttggtcctcacattttgaccagctcacgaaaatgttcatgcctctttcaa 29021347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 447
Target Start/End: Original strand, 25274760 - 25274820
Alignment:
Q  390 taattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    ||||| |||||| | ||||| ||||||||||   |||||||||||||||||||||||||||    
T  25274760 taattgcacttttggtcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaa 25274820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 445
Target Start/End: Complemental strand, 45048679 - 45048619
Alignment:
Q  388 tttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttc 445  Q
    |||||||||||||| | ||||| ||||||||||   |||||||||||||||| ||||||||    
T  45048679 tttaattacacttttggtcctcgcattttgaccagttcacgaaaatggtcatacctctttc 45048619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 2868251 - 2868193
Alignment:
Q  389 ttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctcttt 444  Q
    ||||||||||||| |||||||||||||||||   | ||||||||||||| | |||||||    
T  2868251 ttaattacacttttgatcctcacattttgaccaacacacgaaaatggtcctacctcttt 2868193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 444
Target Start/End: Original strand, 23526665 - 23526719
Alignment:
Q  393 ttacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctcttt 444  Q
    ||||||||| | ||||||||||||||||   |||||||||||||| |||||||||    
T  23526665 ttacacttttggtcctcacattttgaccagctcacgaaaatggtcctgcctcttt 23526719  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 447
Target Start/End: Original strand, 39485067 - 39485129
Alignment:
Q  388 tttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctctttcaa 447  Q
    |||||||||||||| | ||||| |||||||||   ||||||||||||||| | ||||||||||    
T  39485067 tttaattacacttttggtcctcgcattttgactagctcacgaaaatggtcctacctctttcaa 39485129  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 50304442 - 50304500
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctcttt 444  Q
    ||||||||||||| | ||||| ||||||||||   |||||||||||||||| |||||||    
T  50304442 ttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcatacctcttt 50304500  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 31797320 - 31797259
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||||||||| | ||||||||||||||||   |||||||||||||||||||||||||||    
T  31797320 ttaattacacttttggtcctcacattttgaccagctcacgaaaatggtcatgcctctttcaa 31797259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 42192243 - 42192301
Alignment:
Q  389 ttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctcttt 444  Q
    ||||||||||||| | |||||||||||||||   ||||||||||||||| | |||||||    
T  42192243 ttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctacctcttt 42192301  T

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Target: scaffold1432 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 608 - 547
Alignment:
Q  389 ttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||||||||| ||||||| |||||||||   ||||||||||||||| ||||||||||||    
T  608 ttaattacacttttgatcctcgcattttgacgagctcacgaaaatggtcttgcctctttcaa 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 24335764 - 24335825
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||||||||| ||||||  ||||||||||   |||||||||||||||||||||||||||    
T  24335764 ttaattacactttcgatccttgcattttgaccagctcacgaaaatggtcatgcctctttcaa 24335825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 24336306 - 24336245
Alignment:
Q  389 ttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||||||||| ||||||| |||||||||   ||||||||||||||| ||||||||||||    
T  24336306 ttaattacacttttgatcctcgcattttgacaagctcacgaaaatggtcctgcctctttcaa 24336245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 23986523 - 23986584
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    |||||| |||||| | ||||||||||||||||   ||||||||||||||||| |||||||||    
T  23986523 ttaatttcacttttggtcctcacattttgaccagctcacgaaaatggtcatgtctctttcaa 23986584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 229703 - 229641
Alignment:
Q  388 tttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    |||||||||||||| | || || ||||||||||   |||||||||||||| ||||||||||||    
T  229703 tttaattacacttttggtcttcgcattttgaccagctcacgaaaatggtcttgcctctttcaa 229641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 49407799 - 49407860
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||||||||| | ||||| ||||||||||   |||||||||||||||||||||||||||    
T  49407799 ttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaa 49407860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 40838654 - 40838713
Alignment:
Q  388 tttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctcttt 444  Q
    |||||||||||||| ||||||| |||||||||   ||||||||||||||||| |||||||    
T  40838654 tttaattacacttttgatcctcgcattttgaccaactcacgaaaatggtcatacctcttt 40838713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 447
Target Start/End: Original strand, 27199704 - 27199766
Alignment:
Q  388 tttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    |||||||||| ||| | ||||| ||||||||||   |||||||||||||||||||||||||||    
T  27199704 tttaattacatttttggtcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaa 27199766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 36701639 - 36701578
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||||||||| | ||||| ||||||||||   ||||||||||||||||| |||||||||    
T  36701639 ttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcatgtctctttcaa 36701578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 444
Target Start/End: Complemental strand, 40839201 - 40839137
Alignment:
Q  383 tttgatttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctcttt 444  Q
    |||| |||||||||||||| | |||||||||||||||   ||||||||||||||| | |||||||    
T  40839201 tttggtttaattacacttttggtcctcacattttgacaaactcacgaaaatggtcttacctcttt 40839137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 40275096 - 40275154
Alignment:
Q  389 ttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctcttt 444  Q
    ||||||||||||| | |||||||||||||||   ||||||||||||||| | |||||||    
T  40275096 ttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctacctcttt 40275154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 52237360 - 52237302
Alignment:
Q  389 ttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctcttt 444  Q
    ||||||||||||| | |||||||||||||||   ||||||||||||||| | |||||||    
T  52237360 ttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctacctcttt 52237302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 52375330 - 52375388
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctcttt 444  Q
    ||||||||||||| | |||||||||||| |||   |||||||||||||||| |||||||    
T  52375330 ttaattacacttttggtcctcacattttaaccaattcacgaaaatggtcatacctcttt 52375388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 15115635 - 15115577
Alignment:
Q  389 ttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctcttt 444  Q
    ||||||||||||| |||||||||||||||||   ||||||||||||||| | |||||||    
T  15115635 ttaattacacttttgatcctcacattttgaccaactcacgaaaatggtcctacctcttt 15115577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 41834602 - 41834542
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttca 446  Q
    ||||||||||||| | ||||| ||||||||||   |||||||||||||| |||||||||||    
T  41834602 ttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcctgcctctttca 41834542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 13556998 - 13557056
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||||||||   |||||| ||||||||||   |||||||||||||||||||||||||||    
T  13556998 ttaattacactt---atcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaa 13557056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 205910 - 205849
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    |||||||||||||   ||||||||||||||||   |||||||||||||| ||||||||||||    
T  205910 ttaattacacttttagtcctcacattttgaccaactcacgaaaatggtcctgcctctttcaa 205849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 210880 - 210819
Alignment:
Q  389 ttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||||||||| | |||||||||||||||   |||| |||||||||| ||||||||||||    
T  210880 ttaattacacttttggtcctcacattttgaccaactcatgaaaatggtcctgcctctttcaa 210819  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 49064263 - 49064202
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctctttcaa 447  Q
    ||||||| ||||| ||||||||||||||| ||   ||||||||||||||||| |||||||||    
T  49064263 ttaattatacttttgatcctcacattttggccagttcacgaaaatggtcatgactctttcaa 49064202  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 34595315 - 34595257
Alignment:
Q  389 ttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctcttt 444  Q
    ||||||||||||| | |||||||||||||||   ||||||||||||||| ||| |||||    
T  34595315 ttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctgcatcttt 34595257  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 39137076 - 39137018
Alignment:
Q  389 ttaattacactttggatcctcacattttgacc---tcacgaaaatggtcatgcctcttt 444  Q
    ||||||||||||| |||||||  |||||||||   |||||||||||||| |||||||||    
T  39137076 ttaattacacttttgatcctcgtattttgacccgctcacgaaaatggtcctgcctcttt 39137018  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 28877433 - 28877371
Alignment:
Q  388 tttaattacactttggatcctcacattttgac---ctcacgaaaatggtcatgcctctttcaa 447  Q
    |||||||||||||| | ||||| |||||||||   |||||||||||||| || ||||||||||    
T  28877433 tttaattacacttttggtcctcgcattttgaccaactcacgaaaatggttatacctctttcaa 28877371  T

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