View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_low_12 (Length: 461)

Name: NF11109_low_12
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_low_12
NF11109_low_12
[»] chr4 (5 HSPs)
chr4 (124-450)||(2565927-2566235)
chr4 (229-285)||(43429325-43429381)
chr4 (229-285)||(21438386-21438442)
chr4 (229-285)||(51206853-51206909)
chr4 (308-347)||(1757358-1757397)
[»] chr7 (4 HSPs)
chr7 (296-402)||(24007376-24007482)
chr7 (310-347)||(7792353-7792390)
chr7 (294-347)||(33618193-33618246)
chr7 (312-344)||(38599738-38599770)
[»] chr2 (5 HSPs)
chr2 (229-285)||(6256953-6257009)
chr2 (229-285)||(12328773-12328829)
chr2 (294-347)||(43871378-43871431)
chr2 (313-347)||(9171577-9171611)
chr2 (295-347)||(42554034-42554086)
[»] chr1 (2 HSPs)
chr1 (229-285)||(4437186-4437242)
chr1 (229-285)||(25668984-25669040)
[»] chr3 (3 HSPs)
chr3 (294-347)||(51390518-51390571)
chr3 (229-285)||(54523246-54523302)
chr3 (310-384)||(34848184-34848258)
[»] chr5 (1 HSPs)
chr5 (294-347)||(25595424-25595477)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 124 - 450
Target Start/End: Original strand, 2565927 - 2566235
Alignment:
Q  124 tatctaacaaaactatcaaagcattgatttaagttactgatacaaaacatagagtgccacttgaattaagaaactagactttcaaatcatatcataaatt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2565927 tatctaacaaaactatcaaagcattgatttaagttactgatacaaaacatagagtgccacttgaattaagaaactagactttcaaatcatatcataaatt 2566026  T
Q  224 catggttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattctaattaaaactacatcatgttgatgttgattacatcgtt 323  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2566027 catgcttctatgttattcatcttgtttgtctaacttccttcatccgccttctacgtcattctaattaaaactacatcatgttaatgttgattacatcgtt 2566126  T
Q  324 attgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttcaatagcctgtttatatcatatgtaaatgatggacaatttt 423  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||                  ||||||| |||||||  |||||||||||||||||    
T  2566127 attgtttcgttactttattatcctcattactatcactgcttcatacat------------------ctgtttacatcatatacaaatgatggacaatttt 2566208  T
Q  424 tagatggattgatcaaactgtattctt 450  Q
    |||||||||||||||||||||||||||    
T  2566209 tagatggattgatcaaactgtattctt 2566235  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 43429381 - 43429325
Alignment:
Q  229 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 285  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  43429381 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgtcattct 43429325  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 21438386 - 21438442
Alignment:
Q  229 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 285  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| | ||||||    
T  21438386 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattct 21438442  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 51206909 - 51206853
Alignment:
Q  229 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 285  Q
    |||||| |||||||||| |||||||||||||||||||||| | ||||| | ||||||    
T  51206909 ttctatgttattcatctggtttgtctaacttccttcatcctttttctatgccattct 51206853  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 1757358 - 1757397
Alignment:
Q  308 tgttgattacatcgttattgttccgttactttattatcct 347  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  1757358 tgttgattacatcgttattgtttcgttagtttattatcct 1757397  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 402
Target Start/End: Original strand, 24007376 - 24007482
Alignment:
Q  296 acatcatgttgatgttgattacatcgttattgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttcaatagcctgttt 395  Q
    ||||| ||||| | ||||||||||| |||||||| | ||| ||||||||||| ||| |||||||||||||||| ||||||| |||||| | | |||||||    
T  24007376 acatcgtgttgttattgattacatctttattgtttcattattttattatccttattgctatcactgcttcatatatcgttattgtttcgacaacctgttt 24007475  T
Q  396 atatcat 402  Q
    | |||||    
T  24007476 acatcat 24007482  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 7792353 - 7792390
Alignment:
Q  310 ttgattacatcgttattgttccgttactttattatcct 347  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7792353 ttgattacatcgttattgtttcgttactttattatcct 7792390  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 33618246 - 33618193
Alignment:
Q  294 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 347  Q
    ||||||| ||||| | | |||||||||||||||||| | |||||||||||||||    
T  33618246 ctacatcgtgttgttatcgattacatcgttattgtttctttactttattatcct 33618193  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 38599770 - 38599738
Alignment:
Q  312 gattacatcgttattgttccgttactttattat 344  Q
    |||||||||||||||||| ||||||||||||||    
T  38599770 gattacatcgttattgtttcgttactttattat 38599738  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 6256953 - 6257009
Alignment:
Q  229 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 285  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| | ||||||    
T  6256953 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattct 6257009  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 12328773 - 12328829
Alignment:
Q  229 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 285  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  12328773 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 12328829  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 43871378 - 43871431
Alignment:
Q  294 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 347  Q
    ||||||||||||| | | |||||||||||||||||| |||| ||||||||||||    
T  43871378 ctacatcatgttgttatagattacatcgttattgtttcgttgctttattatcct 43871431  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 9171577 - 9171611
Alignment:
Q  313 attacatcgttattgttccgttactttattatcct 347  Q
    ||||||||||||||||| |||||||||||||||||    
T  9171577 attacatcgttattgtttcgttactttattatcct 9171611  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 42554034 - 42554086
Alignment:
Q  295 tacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 347  Q
    |||||||||||| | | |||||||||||||||||  ||||||| |||||||||    
T  42554034 tacatcatgttgttatcgattacatcgttattgtctcgttactctattatcct 42554086  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 4437242 - 4437186
Alignment:
Q  229 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 285  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  4437242 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 4437186  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 25669040 - 25668984
Alignment:
Q  229 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 285  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  25669040 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 25668984  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 51390571 - 51390518
Alignment:
Q  294 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 347  Q
    ||||||||||||| | | ||||||||||| |||||| |||||||||||||||||    
T  51390571 ctacatcatgttgttatcgattacatcgtcattgtttcgttactttattatcct 51390518  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 54523302 - 54523246
Alignment:
Q  229 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 285  Q
    |||||| |||||||||| ||||||||||||| |||||||| ||||||| | ||||||    
T  54523302 ttctatgttattcatctggtttgtctaactttcttcatccttcttctatgccattct 54523246  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 34848258 - 34848184
Alignment:
Q  310 ttgattacatcgttattgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttca 384  Q
    ||||||||||  ||||||||  |||||||||||| ||| |||  ||||||| |||||||||| |||| |||||||    
T  34848258 ttgattacattattattgttttgttactttattaaccttattgttatcactccttcatacattgttactgtttca 34848184  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 25595424 - 25595477
Alignment:
Q  294 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 347  Q
    ||||||| ||||||| | |||||||||||||||||| | ||||| |||||||||    
T  25595424 ctacatcgtgttgatatcgattacatcgttattgtttctttactctattatcct 25595477  T

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