View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_low_13 (Length: 430)
Name: NF11109_low_13
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 30276204 - 30276600
Alignment:
| Q |
18 |
attaaggtggttaaaaccatttaaatttgaaacttcttgttgagtgttattgccattctgagtagccaacatgtgaacggattctattccttgtcctact |
117 |
Q |
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| T |
30276204 |
attaaggtggttaaaaccatttaaatttgaaacttcttgttgagtgttattgccattctgagtagccaacatgtgaacggattctattccttgtgctact |
30276303 |
T |
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| Q |
118 |
tgagcattgtgcatttgacaatacctttgcctgcaaataaagagtaccaaataagttgttgaatatttcttttgaatagtttttaacttttaacttacaa |
217 |
Q |
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| T |
30276304 |
tgagcattgtgcatctgacaatacctttgcctgcaaataaagagtaccaaataagttgttgaatatttcttttgaatagtttttaacttttaacttacaa |
30276403 |
T |
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| Q |
218 |
gtaaagcaaataaataagagattaattttgatgtatcgtcagtgtaaaacattttatcctttaccgatcacaaaccatcctttatatgccttttaaggaa |
317 |
Q |
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| T |
30276404 |
gtaaagcaaataaataagagattaattttgatgcatcgtcagtgtaaaacattttatactctaccaatcacaaaccatcctttatatcccttttaaggca |
30276503 |
T |
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| Q |
318 |
gatatgattgaaatcaaatgttttaaatgatccaacaattgtgatagattgacagtgtaatgaattggtatatacctcaattcagaagatcgacttc |
414 |
Q |
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| T |
30276504 |
tatatgattgaaatcaaatgttttaaatgatccaacaattgtgattgattgacagtgtaatgaattggtatatacctcaattcagaagatcgacttc |
30276600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 377
Target Start/End: Original strand, 39156659 - 39156752
Alignment:
| Q |
284 |
atcacaaaccatcctttatatgccttttaaggaagatatgattgaaatcaaatgttttaaatgatccaacaattgtgatagattgacagtgtaa |
377 |
Q |
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||||||||||||| ||| |||| ||||||||| | |||||||||| |||||| |||| | |||||||| || |||| ||||||||| |||| |
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| T |
39156659 |
atcacaaaccatcatttgtatgacttttaaggtatgtatgattgaagtcaaatatttttattgatccaatggttatgattgattgacagagtaa |
39156752 |
T |
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