View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_low_14 (Length: 394)
Name: NF11109_low_14
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 38356176 - 38356551
Alignment:
| Q |
19 |
acacttggaaaatcaatatcccccatgtaactatacttgaatagcacattctagttttcaagatacttgagtgaaacatgaggtgaaattaaaaagcatt |
118 |
Q |
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| T |
38356176 |
acacatggaaaatcaatatcccctatgtaactatacttgaatagcacattctagttttcaagatacttgagtgaaacatgaggtgaaattaaaaagcatt |
38356275 |
T |
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| Q |
119 |
cttaatcttgaagactaataatttaacccacttagtataactgaatgaaggtttatctgaaacaggtatgagctttactaagcaagcaagtggccatgaa |
218 |
Q |
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| T |
38356276 |
cttaatcttgaagactaataatttaacccacttagtataactgaatgaaggtttatctgaaacaggtatgagctttactaagcaagcaagtggccatgaa |
38356375 |
T |
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| Q |
219 |
acaactgcaattccaatacaaattccccattgctcccatgttaatctttctgtatcagcaaatttccttagcagttccaccatcaggatttgaagaacaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356376 |
acaactgcaattccaatacaaattccccattgctcccatgttaatctttctgtatcagcaaatttccttagcagttccaccatcaggatttgaagaacaa |
38356475 |
T |
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| Q |
319 |
cagtaataccaataattccaagaaacaagtggtttttaagaatcccttcaaatacataaagtttctccatgcttct |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356476 |
tagtaataccaataattccaagaaacaagtggtttttaagaatcccttcaaatacataaagtttctccatgcttct |
38356551 |
T |
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