View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_low_15 (Length: 392)

Name: NF11109_low_15
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_low_15
NF11109_low_15
[»] chr6 (28 HSPs)
chr6 (18-385)||(4579189-4579556)
chr6 (94-379)||(4574141-4574426)
chr6 (177-379)||(4560422-4560624)
chr6 (151-379)||(4598061-4598289)
chr6 (256-379)||(4585631-4585754)
chr6 (252-379)||(4613732-4613859)
chr6 (258-379)||(4563708-4563829)
chr6 (243-379)||(4557107-4557243)
chr6 (250-379)||(4592220-4592349)
chr6 (247-379)||(4570958-4571090)
chr6 (261-379)||(4480693-4480811)
chr6 (261-379)||(4516321-4516439)
chr6 (271-379)||(4504411-4504519)
chr6 (264-379)||(3171744-3171859)
chr6 (261-379)||(4461123-4461241)
chr6 (261-379)||(4617022-4617140)
chr6 (243-339)||(4606945-4607041)
chr6 (280-379)||(4490369-4490468)
chr6 (261-377)||(4505857-4505973)
chr6 (261-379)||(4601789-4601907)
chr6 (261-374)||(4515140-4515253)
chr6 (271-379)||(4469813-4469921)
chr6 (261-356)||(4492955-4493050)
chr6 (265-367)||(4392052-4392154)
chr6 (264-379)||(4625954-4626069)
chr6 (280-377)||(4568072-4568172)
chr6 (264-356)||(4267203-4267295)
chr6 (264-379)||(4622145-4622260)
[»] chr8 (3 HSPs)
chr8 (245-375)||(20863861-20863991)
chr8 (261-377)||(1674226-1674342)
chr8 (243-379)||(16686281-16686417)
[»] scaffold0477 (1 HSPs)
scaffold0477 (264-378)||(4701-4815)
[»] chr5 (2 HSPs)
chr5 (261-377)||(28000115-28000231)
chr5 (264-356)||(24103002-24103094)
[»] scaffold0288 (1 HSPs)
scaffold0288 (264-379)||(3733-3848)
[»] chr3 (1 HSPs)
chr3 (261-367)||(1281114-1281220)
[»] chr7 (1 HSPs)
chr7 (271-314)||(3086430-3086473)


Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 4579189 - 4579556
Alignment:
Q  18 ataggatataacctttcaaatcaatctccgaagcaagaagcttacaagcaatgagaagtttatgaatataatattaatgtgatctttagttatgaagaat 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4579189 ataggatagaacctttcaaatcaatctccgaagcaagaagcttacaagcaatgagaagtttatgaatataatattaatgtgatctttagttacgaagaat 4579288  T
Q  118 gaacttgatgaagttgaatgcattgttacgatattcctgactaaaatgttgatatccacacttaagaacataggtagacataaaatgcaaattatttggt 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579289 gaacttgatgaagttgaatgcattgttacgatgttcctgactaaaatgttgatatccacacttaagaacataggtagacataaaatgcaaattatttggt 4579388  T
Q  218 ccgaacaaaactataaaaattgtacaaaagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcc 317  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4579389 ccgaacaaaactataaaaatcgtacaaaagtcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcc 4579488  T
Q  318 tccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttctctgctt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4579489 tccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttctttgctt 4579556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 94 - 379
Target Start/End: Original strand, 4574141 - 4574426
Alignment:
Q  94 atgtgatctttagttatgaagaatgaacttgatgaagttgaatgcattgttacgatattcctgactaaaatgttgatatccacacttaagaacataggta 193  Q
    |||||||||||| |||||||||||||||||||||||   ||||||||  |||| || || ||||||||| ||||||| | || ||||||||||||||| |    
T  4574141 atgtgatctttatttatgaagaatgaacttgatgaacaagaatgcatcattacaatgtttctgactaaattgttgatgttcatacttaagaacataggaa 4574240  T
Q  194 gacataaaatgcaaattatttggtccgaacaaaactataaaaattgtacaaaagtcacttaagtttgattttgtttgagcaacacctccttaatcacttt 293  Q
    ||| ||||||   ||||||||| ||| |||||||||||| | |||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||    
T  4574241 gacctaaaatatgaattatttgttcctaacaaaactatatatattgtataaaagtgacttaagcttgattttgtttaagcaacacctccttaatcacttt 4574340  T
Q  294 ctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttct 379  Q
    |||||||||  |||||||||| |||||||||||||||||| |||||||||||||||||| |||||| || ||||||||||||||||    
T  4574341 ctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatggctttttgcctcatcttct 4574426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 177 - 379
Target Start/End: Original strand, 4560422 - 4560624
Alignment:
Q  177 acttaagaacataggtagacataaaatgcaaattatttggtccgaacaaaactataaaaattgtacaaaagtcacttaagtttgattttgtttgagcaac 276  Q
    ||||||||||||||  |||| |||||| ||||| ||||| ||| |||||||||||| | |||||| |||||| ||||| |||||||||||||| ||||||    
T  4560422 acttaagaacatagcaagacctaaaatacaaatgatttgttcctaacaaaactatatatattgtataaaagtaacttatgtttgattttgtttaagcaac 4560521  T
Q  277 acctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatct 376  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||| ||||||| ||| || ||||||||||||||||    
T  4560522 acctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggccttttgcctcatct 4560621  T
Q  377 tct 379  Q
    |||    
T  4560622 tct 4560624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 151 - 379
Target Start/End: Original strand, 4598061 - 4598289
Alignment:
Q  151 ttcctgactaaaatgttgatatccacacttaagaacataggtagacataaaatgcaaattatttggtccgaacaaaactataaaaattgtacaaaagtca 250  Q
    ||||||||||||||||||||   ||||||| |||| ||||||  ||| ||| |  |||||||||| ||| || ||||||||||| ||| ||  ||||| |    
T  4598061 ttcctgactaaaatgttgatgctcacactttagaatataggttaacaaaaagtaaaaattatttgatcctaataaaactataaatattttattaaagtta 4598160  T
Q  251 cttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttctt 350  Q
     |||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||| ||||| ||||    
T  4598161 attaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatctt 4598260  T
Q  351 caactcaattgccttttgcctcatcttct 379  Q
    ||| ||||||| |||||||||||| ||||    
T  4598261 caaatcaattgtcttttgcctcattttct 4598289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 256 - 379
Target Start/End: Original strand, 4585631 - 4585754
Alignment:
Q  256 gtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaact 355  Q
    |||||||||| ||| ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  4585631 gtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaact 4585730  T
Q  356 caattgccttttgcctcatcttct 379  Q
    | ||||||||||||||||||||||    
T  4585731 cgattgccttttgcctcatcttct 4585754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 252 - 379
Target Start/End: Complemental strand, 4613859 - 4613732
Alignment:
Q  252 ttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttc 351  Q
    |||||||||||||||||| |||| |||||| || |||||||| ||||||||||| |||||||| ||||| |||||||||||||||||  |||||||||||    
T  4613859 ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttc 4613760  T
Q  352 aactcaattgccttttgcctcatcttct 379  Q
    ||||||||||||||||||||||| ||||    
T  4613759 aactcaattgccttttgcctcattttct 4613732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 258 - 379
Target Start/End: Original strand, 4563708 - 4563829
Alignment:
Q  258 ttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactca 357  Q
    |||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||  |||||||| |||||||||||||||    
T  4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactca 4563807  T
Q  358 attgccttttgcctcatcttct 379  Q
    ||||||||||||| ||||||||    
T  4563808 attgccttttgccgcatcttct 4563829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 243 - 379
Target Start/End: Original strand, 4557107 - 4557243
Alignment:
Q  243 aaaagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccacc 342  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||| ||    
T  4557107 aaaagtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgcc 4557206  T
Q  343 ttcttcttcaactcaattgccttttgcctcatcttct 379  Q
    ||| |||||| |||||||  ||||| || ||||||||    
T  4557207 ttcgtcttcatctcaattatctttttccacatcttct 4557243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 250 - 379
Target Start/End: Original strand, 4592220 - 4592349
Alignment:
Q  250 acttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttct 349  Q
    |||||| ||||||||| ||| |||||||||||||| |||| ||| ||||||||||| |||||||| |||||||||||||||| ||||||  |||||||||    
T  4592220 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttct 4592319  T
Q  350 tcaactcaattgccttttgcctcatcttct 379  Q
    ||||||| |||||||||| |||||||||||    
T  4592320 tcaactcgattgcctttttcctcatcttct 4592349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 247 - 379
Target Start/End: Original strand, 4570958 - 4571090
Alignment:
Q  247 gtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttct 346  Q
    |||||||| || ||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  4570958 gtcacttaggtgtgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttct 4571057  T
Q  347 tcttcaactcaattgccttttgcctcatcttct 379  Q
    |||||| ||| |||   |||| |||||||||||    
T  4571058 tcttcatctccattatatttttcctcatcttct 4571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 261 - 379
Target Start/End: Original strand, 4480693 - 4480811
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||  || ||||||||||||| ||     
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatg 4480792  T
Q  361 gccttttgcctcatcttct 379  Q
    ||||||||| |||||||||    
T  4480793 gccttttgcttcatcttct 4480811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 379
Target Start/End: Original strand, 4516321 - 4516439
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    |||||||||||||| |||||||||||||||||| ||||||||||  |||||||| || || ||||| |||||||||||  ||||||||||||| || ||     
T  4516321 attttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatg 4516420  T
Q  361 gccttttgcctcatcttct 379  Q
    |||||||||||||||||||    
T  4516421 gccttttgcctcatcttct 4516439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 379
Target Start/End: Complemental strand, 4504519 - 4504411
Alignment:
Q  271 agcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcc 370  Q
    ||||| || |||||||||||||| |||||||||||||||||||| || ||| |||| |||||||||||  |||||||||||||||| || ||||||||||    
T  4504519 agcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttttgcc 4504420  T
Q  371 tcatcttct 379  Q
    |||||||||    
T  4504419 tcatcttct 4504411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 3171744 - 3171859
Alignment:
Q  264 ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc 363  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||||||| || |||  ||| || ||||||||  |||||||||||||||| || |||    
T  3171744 ttgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggcc 3171843  T
Q  364 ttttgcctcatcttct 379  Q
     |||||||||||||||    
T  3171844 ctttgcctcatcttct 3171859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 379
Target Start/End: Original strand, 4461123 - 4461241
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    ||||||||| ||||| || |||||||| ||||| ||||||||| ||||||||   ||||||||||| || |||||||||||||||||||| || || ||     
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatg 4461222  T
Q  361 gccttttgcctcatcttct 379  Q
     ||||||||||||||||||    
T  4461223 accttttgcctcatcttct 4461241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 379
Target Start/End: Original strand, 4617022 - 4617140
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    ||||||||| |||||||| |||||||| ||||| | |||||||||||||||||| || || ||||| |||| ||||||  |||||||||||||||| ||     
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 4617121  T
Q  361 gccttttgcctcatcttct 379  Q
    ||||||||| |||| ||||    
T  4617122 gccttttgcttcattttct 4617140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 4607041 - 4606945
Alignment:
Q  243 aaaagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctcc 339  Q
    |||||||||||| |||||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| | || || |||||| ||||| |||||    
T  4607041 aaaagtcacttaggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctcttgtccccctcc 4606945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 379
Target Start/End: Complemental strand, 4490468 - 4490369
Alignment:
Q  280 tccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttct 379  Q
    |||||||||||||| |||||||||||||||||||  || ||  |||||||||||||| |  ||||||||||||||||  | |||||||||||||||||||    
T  4490468 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 4490369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 377
Target Start/End: Original strand, 4505857 - 4505973
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||| || |||||||| || |||||||   || |||| |||||||| ||     
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatg 4505956  T
Q  361 gccttttgcctcatctt 377  Q
     |||||| |||||||||    
T  4505957 acctttttcctcatctt 4505973  T

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Target: chr6; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 379
Target Start/End: Original strand, 4601789 - 4601907
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    ||||||||| ||||||||||||||||| ||||| |||| |||| |||||||||| || ||  |||| |||  |||||   || ||||||||||||| ||     
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatg 4601888  T
Q  361 gccttttgcctcatcttct 379  Q
    |||||||||||||||||||    
T  4601889 gccttttgcctcatcttct 4601907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 374
Target Start/End: Complemental strand, 4515253 - 4515140
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    ||||||||| |||||||||||||| |||||||| |||||||||| ||||||| | || ||| |||| |||||||| ||  ||||||| |||||||| ||     
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccata 4515154  T
Q  361 gccttttgcctcat 374  Q
     |||||| ||||||    
T  4515153 acctttttcctcat 4515140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 379
Target Start/End: Original strand, 4469813 - 4469921
Alignment:
Q  271 agcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcc 370  Q
    ||||| || |||||||| ||||| ||||||||| ||||||||   ||||||||||| || |||||||||||||||||||| ||||| ||   ||||| ||    
T  4469813 agcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttttccc 4469912  T
Q  371 tcatcttct 379  Q
    |||||||||    
T  4469913 tcatcttct 4469921  T

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Target: chr6; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 4492955 - 4493050
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 356  Q
    ||||||||| ||||| || ||||| |||||||| |||||||||||||||||||| || ||||||   |||||||||||  ||||||| ||||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactc 4493050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 367
Target Start/End: Complemental strand, 4392154 - 4392052
Alignment:
Q  265 tgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcct 364  Q
    ||||| ||||| ||||||||||||| ||| |||||||||||| ||||| | || |||||||  ||||||||||   |||||||||||||||| || ||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgcct 4392055  T
Q  365 ttt 367  Q
    |||    
T  4392054 ttt 4392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 4625954 - 4626069
Alignment:
Q  264 ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc 363  Q
    |||||| ||||| || || ||||||| ||| ||||  |||||||||||||| || || || ||  ||| ||||||  |||||||||||||||| || |||    
T  4625954 ttgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggcc 4626053  T
Q  364 ttttgcctcatcttct 379  Q
    ||||||||||||||||    
T  4626054 ttttgcctcatcttct 4626069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 4568072 - 4568172
Alignment:
Q  280 tccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcct---ccaccttcttcttcaactcaattgccttttgcctcatct 376  Q
    |||||||||||||| |||||||||||||||||| |  | |||||||| ||||||| ||   ||  ||||||||||||||| |  ||||||||||||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatct 4568171  T
Q  377 t 377  Q
    |    
T  4568172 t 4568172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 4267295 - 4267203
Alignment:
Q  264 ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 356  Q
    |||||| ||||  ||||||||||| ||||| |||||||||||||||||| | || |||||||| |||| ||| ||  ||||| ||||||||||    
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactc 4267203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 4622145 - 4622260
Alignment:
Q  264 ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc 363  Q
    |||||| ||||  ||||||||||| ||||| ||||||||  |||||||||| || ||||| || ||   ||| ||  |||||| ||||||||| || |||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc 4622244  T
Q  364 ttttgcctcatcttct 379  Q
    ||||| ||||||||||    
T  4622245 ttttgtctcatcttct 4622260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 245 - 375
Target Start/End: Complemental strand, 20863991 - 20863861
Alignment:
Q  245 aagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccacctt 344  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||  ||| | ||||| |||||||||||  ||||    
T  20863991 aagtcacttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgcctt 20863892  T
Q  345 cttcttcaactcaattgccttttgcctcatc 375  Q
    ||||||||||||| ||| |||||||||||||    
T  20863891 cttcttcaactcatttgtcttttgcctcatc 20863861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 377
Target Start/End: Original strand, 1674226 - 1674342
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || || ||||| |||| ||||||  ||||||||||||| || ||     
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatg 1674325  T
Q  361 gccttttgcctcatctt 377  Q
    |||||||||||||||||    
T  1674326 gccttttgcctcatctt 1674342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 379
Target Start/End: Complemental strand, 16686417 - 16686281
Alignment:
Q  243 aaaagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccacc 342  Q
    |||||||||||| |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| || |||||||||| ||| || ||||||    
T  16686417 aaaagtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccacc 16686318  T
Q  343 ttcttcttcaactcaattgccttttgcctcatcttct 379  Q
    ||| | | ||  ||||||  ||||| |||||||||||    
T  16686317 ttcatttgcagttcaattatctttttcctcatcttct 16686281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 378
Target Start/End: Complemental strand, 4815 - 4701
Alignment:
Q  264 ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc 363  Q
    |||||| ||||  ||||||||||||||||| ||||||||||||||||||||||| ||||  || |||| ||||||  |||||||||||||||| || |||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggcc 4716  T
Q  364 ttttgcctcatcttc 378  Q
    |||||||||||||||    
T  4715 ttttgcctcatcttc 4701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 28000231 - 28000115
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    ||||||||| | |||||| |||||||||||||| |||||||||||||||||||| || || ||||| |||| ||||||  |||| ||||||||||| ||     
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatg 28000132  T
Q  361 gccttttgcctcatctt 377  Q
    |||||||||||||||||    
T  28000131 gccttttgcctcatctt 28000115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 24103002 - 24103094
Alignment:
Q  264 ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactc 356  Q
    |||||| ||||  ||||||||||| ||||| |||||||||||||||||| | || |||| ||| |||| ||| ||  |||||||||| |||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactc 24103094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 3848 - 3733
Alignment:
Q  264 ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc 363  Q
    |||||| ||||| ||||||||||| ||||| |||| ||||||||||||||  || || ||||| |||| ||||||  |||||||||| ||||| |  |||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggcc 3749  T
Q  364 ttttgcctcatcttct 379  Q
    ||||||||||||||||    
T  3748 ttttgcctcatcttct 3733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 1281114 - 1281220
Alignment:
Q  261 attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt 360  Q
    ||||||||| |||||||  |||||||||||||| || ||||||||||||||||| || || ||||| |||| ||||||| ||  ||||||||| || ||     
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatg 1281213  T
Q  361 gcctttt 367  Q
    |||||||    
T  1281214 gcctttt 1281220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 3086430 - 3086473
Alignment:
Q  271 agcaacacctccttaatcactttctccaagttcatgtatgaaca 314  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||    
T  3086430 agcaagacctccttaataactttgtccaagttcatgtatgaaca 3086473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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