View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_low_2 (Length: 639)

Name: NF11109_low_2
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_low_2
NF11109_low_2
[»] chr8 (8 HSPs)
chr8 (20-627)||(4130045-4130652)
chr8 (168-627)||(4120112-4120568)
chr8 (86-627)||(4150471-4151016)
chr8 (429-626)||(4142806-4143003)
chr8 (431-627)||(4159837-4160033)
chr8 (168-340)||(4159557-4159729)
chr8 (144-334)||(4142514-4142704)
chr8 (486-527)||(10401662-10401703)
[»] chr7 (18 HSPs)
chr7 (501-626)||(19939021-19939146)
chr7 (501-626)||(19970160-19970285)
chr7 (250-331)||(20062380-20062461)
chr7 (501-626)||(20284855-20284980)
chr7 (235-331)||(20294824-20294920)
chr7 (253-333)||(20303863-20303943)
chr7 (490-623)||(20289169-20289302)
chr7 (169-293)||(20279703-20279827)
chr7 (220-332)||(20289417-20289529)
chr7 (543-626)||(20062632-20062715)
chr7 (220-331)||(20243796-20243907)
chr7 (490-626)||(20168098-20168234)
chr7 (490-626)||(20279425-20279561)
chr7 (220-311)||(20231744-20231835)
chr7 (501-626)||(20005402-20005527)
chr7 (250-326)||(20167901-20167977)
chr7 (490-602)||(20243546-20243658)
chr7 (502-626)||(20294572-20294696)
[»] chr4 (3 HSPs)
chr4 (490-626)||(40823849-40823985)
chr4 (237-332)||(40823639-40823734)
chr4 (505-569)||(36366446-36366510)
[»] chr5 (1 HSPs)
chr5 (218-278)||(28433416-28433476)
[»] chr3 (4 HSPs)
chr3 (227-278)||(1050700-1050751)
chr3 (227-278)||(1077602-1077653)
chr3 (227-278)||(1091481-1091532)
chr3 (496-604)||(5488882-5488990)
[»] chr2 (2 HSPs)
chr2 (501-536)||(37713838-37713873)
chr2 (220-278)||(2698252-2698310)
[»] chr6 (2 HSPs)
chr6 (487-527)||(20233288-20233328)
chr6 (487-527)||(22127272-22127312)


Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 20 - 627
Target Start/End: Original strand, 4130045 - 4130652
Alignment:
Q  20 ttcagttgtgaaaatgggtcccataatataaaaactctaattcacgtaaaataatggaacccacacaaattttagacaataatgaagtgatgaacatgta 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130045 ttcagttgtgaaaatggatcccataatataaaaactctaattcacgtaaaataatggaacccacacaaattttagacaataatgaagtgatgaacatgta 4130144  T
Q  120 ttgctaaactttttgtcaaattaagtaatagagacatggattacatagacttacaaagccaacaaggctaagagaatcctcattttgataaaagctgtta 219  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130145 ttgctaaactttttgtcaaataaagtaatagagacatggattacatagacttacaaagccaacaaggctaagagaatcctcattttgataaaagctgtta 4130244  T
Q  220 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130245 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatat 4130344  T
Q  320 aaccactacatttagagcatatatattataacaagtacatatgtaataactaactcactaatttgtaagattaattattttaacattatattgtcaaatg 419  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130345 aaccactacatttagagcatatatattataataagtacatatgtaataactaactcactaatttgtaagattaattattttaacattatattgtcaaatg 4130444  T
Q  420 atataggaatacttactaagttccaacaaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatattttt 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130445 atataggaatacttactaagttccaacaaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatattttt 4130544  T
Q  520 ggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagcta 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4130545 ggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctgtgtataatcttaagtctcgagtctctatgaagatacattattcctcgagcta 4130644  T
Q  620 ttccttca 627  Q
    ||||||||    
T  4130645 ttccttca 4130652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 168 - 627
Target Start/End: Original strand, 4120112 - 4120568
Alignment:
Q  168 acttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatat 267  Q
    |||||||||||| ||||||||||| ||||||||  | |||||||||||  |||||||||| || || |||||||||||||||||||| ||||||||||||    
T  4120112 acttacaaagcctacaaggctaagtgaatcctcgctgtgataaaagctcgtatttcttcgcccactgacaatctctagcaataaaaccccaaagctatat 4120211  T
Q  268 acatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttagagcatatatattataacaagtacatatgtaata 367  Q
    |||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||| ||   ||   |||||     
T  4120212 acatctgatttctcagagaaaagcccctccattgcatattctggcggcatataaccactgcatttaaagcatatatgttataataa---caggagtaatg 4120308  T
Q  368 actaactcactaatttgtaagattaattattttaacattatattgtcaaatgatataggaatacttactaagttccaacaaccctttttgtgttagcttc 467  Q
    | |||   | | |||||||  |||||| ||   |||| |||| |||  ||||| |||||| ||||||||||||||| ||||||||||| |||||||||||    
T  4120309 attaaacaattcatttgtagcattaataatcccaacaatataatgttcaatgagataggattacttactaagttccgacaacccttttcgtgttagcttc 4120408  T
Q  468 atcaccttctccacctttaacaattctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctcta 567  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||  ||||||||||||  |||||||||||||||||||||    
T  4120409 atcatcttctccacctttaacaattctagctaacccaaagtctgatatctttggaatcatgtctccatcaagtaagacattgcttgcttttaaatctcta 4120508  T
Q  568 tgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttca 627  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  4120509 tgtataatcttaagtcttgagtctctatgaagatacattatacctcgagctattccttca 4120568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 86 - 627
Target Start/End: Original strand, 4150471 - 4151016
Alignment:
Q  86 aaattttagacaataatgaagtgatgaacatgtattgctaa-actt--tttgtcaaattaagtaatagagacatggattacatagacttacaaagccaac 182  Q
    ||||||||||||| ||||||||| ||||  |||||||| || ||||  ||| ||| | || |||||  || |||||| ||  ||||||||||||||| ||    
T  4150471 aaattttagacaagaatgaagtgttgaaagtgtattgccaacacttcttttctcatagtatgtaatgaaggcatggagtatttagacttacaaagcctac 4150570  T
Q  183 aaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctct 282  Q
    ||||||||||| |||||| |  ||| |||||||  ||||||||| |||||| |||||||| ||||||| ||| ||||||||||| ||||||||||| ||     
T  4150571 aaggctaagagtatcctcgtgatgagaaaagctactatttcttcttccgctaacaatctccagcaatagaaccccaaagctatagacatctgatttttca 4150670  T
Q  283 gagaaaagtccccccattgcatattcaggcggcatataaccactacatttagagcatatat-attataac---aagtacatatgtaataactaactcact 378  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||||| | | ||||||   ||||| | |    | || |||  ||||    
T  4150671 gagaaaagcccctccattgcatattcaggcggcatataaccactgcatttagaacatatgttactataaccccaagtaaaaaaaataaaattaaaccact 4150770  T
Q  379 aatttgtaagattaattattttaacattatattgtcaaatgatataggaatacttactaagttccaacaaccctttttgtgttagcttcatcaccttctc 478  Q
     |||||||| | |||||     ||||||||| | |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4150771 catttgtaacactaattcc---aacattataatatcaaatgagatagtactacttactaagttccaacaaccctttttgtgttagcttcatcatcttctc 4150867  T
Q  479 cacctttaacaattctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataatttt 578  Q
    ||  |||||||||||| |||||||| ||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||||| ||  |    
T  4150868 caaatttaacaattcttgctaaaccgaagtctgatatttttggaatcatgtcactatcaagtaagatgttgcttgcttttagatctctatgtatgatcct 4150967  T
Q  579 aagtctcgagtctctatgaagatacattattcctcgagctattccttca 627  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4150968 tagtctcgagtctctatgaagatacattatacctcgagctattccttca 4151016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 429 - 626
Target Start/End: Original strand, 4142806 - 4143003
Alignment:
Q  429 tacttactaagttccaacaaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatatttttggaatcatc 528  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||     
T  4142806 tacttactaagttccaacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattctagctaaaccaaagtctgatatttttggaatcatg 4142905  T
Q  529 tcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttc 626  Q
    ||  |||||||||||| |||||| |||||||||||||||||||||||  | ||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  4142906 tcgccatcaagtaagacgttgctggcttttaaatctctatgtataatccttagtcttgagtctctatgaagatacattatacctcgagctatcccttc 4143003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 431 - 627
Target Start/End: Original strand, 4159837 - 4160033
Alignment:
Q  431 cttactaagttccaacaaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatatttttggaatcatctc 530  Q
    |||||||||||||||||||||| |||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4159837 cttactaagttccaacaaccctatttgtgtttgtttcatcatcttctcctcctttaacaattctagctaaaccaaagtctgatatttttggaaccatctc 4159936  T
Q  531 atcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttca 627  Q
      ||||||||||||||||||||||||||||||| | |||||||||  | || |||||||||||||||||||| | ||| ||||||||||| ||||||    
T  4159937 cccatcaagtaagatgttgcttgcttttaaatcccgatgtataatccttagcctcgagtctctatgaagataaagtatacctcgagctatgccttca 4160033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 168 - 340
Target Start/End: Original strand, 4159557 - 4159729
Alignment:
Q  168 acttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatat 267  Q
    |||||||||||||||||||||||||||||| || || || ||||||||  | |||||||| ||||| |||||||||| ||||||||| |||||||||||     
T  4159557 acttacaaagccaacaaggctaagagaatcttcgttgtggtaaaagctactgtttcttcggccgctaacaatctctaacaataaaactccaaagctataa 4159656  T
Q  268 acatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttagagcata 340  Q
    |||||||||||||| || ||||||||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  4159657 acatctgatttctcagaaaaaagtccttccattgcatattcaggcggcatataaccactgcatttagagcata 4159729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 144 - 334
Target Start/End: Original strand, 4142514 - 4142704
Alignment:
Q  144 gtaatagagacatggattacatagacttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctct 243  Q
    |||||| |||||| || || ||| |||||||||||| ||||||||||||||||||||  | |||||||||||  ||||||||||||| || |||| ||||    
T  4142514 gtaataaagacatcgactatataaacttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctct 4142613  T
Q  244 agcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttag 334  Q
    ||||||||||| || || ||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||    
T  4142614 agcaataaaactccgaaactatagacatctgatttctctgagaaaagcccctccattgcatattcaggtggcatataaccactgcatttag 4142704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 527
Target Start/End: Original strand, 10401662 - 10401703
Alignment:
Q  486 aacaattctagctaaaccaaagtctgatatttttggaatcat 527  Q
    |||||||||||| | |||||| ||||||||||||||||||||    
T  10401662 aacaattctagcaagaccaaaatctgatatttttggaatcat 10401703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 501 - 626
Target Start/End: Complemental strand, 19939146 - 19939021
Alignment:
Q  501 accaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaaga 600  Q
    |||||||||||||||||||||| | | ||||| ||| || ||||| || ||||  || |||||||||||||||||||| ||||| || ||||| || |||    
T  19939146 accaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcaga 19939047  T
Q  601 tacattattcctcgagctattccttc 626  Q
    ||||  | ||||||||||||||||||    
T  19939046 tacaacaatcctcgagctattccttc 19939021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 501 - 626
Target Start/End: Complemental strand, 19970285 - 19970160
Alignment:
Q  501 accaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaaga 600  Q
    |||||||||||||||||||||| | | ||||| ||| || ||||| || ||||  || |||||||||||||||||||| ||||| || ||||| || |||    
T  19970285 accaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcaga 19970186  T
Q  601 tacattattcctcgagctattccttc 626  Q
    ||||  | ||||||||||||||||||    
T  19970185 tacaacaatcctcgagctattccttc 19970160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 20062380 - 20062461
Alignment:
Q  250 aaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatt 331  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||   |||||| |||||||| | |||||||||||| ||||    
T  20062380 aaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcgtattcaggagacatataaccactgcatt 20062461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 626
Target Start/End: Complemental strand, 20284980 - 20284855
Alignment:
Q  501 accaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaaga 600  Q
    |||||||||||||||||||||| ||| ||| ||||| |  ||||  || ||||| || ||||||||||| |||||| | ||||| || ||||| ||||||    
T  20284980 accaaagtctgatatttttggattcagctcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctagaatctctgtgaaga 20284881  T
Q  601 tacattattcctcgagctattccttc 626  Q
    || |  | ||||||||||||||||||    
T  20284880 tatagcaatcctcgagctattccttc 20284855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 20294920 - 20294824
Alignment:
Q  235 acaatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatt 331  Q
    |||||||||||||  ||||||||||||||| | ||||||||||||||||| || | |||   ||||||||||||||| | |||||| ||||| ||||    
T  20294920 acaatctctagcatcaaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccactgcatt 20294824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 20303943 - 20303863
Alignment:
Q  253 acaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacattta 333  Q
    |||||||||||| | ||||||||||||||||| |||||||| | |||||| |||||||| | |||||| ||||| ||||||    
T  20303943 acaccaaagctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatatagccactgcattta 20303863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 623
Target Start/End: Complemental strand, 20289302 - 20289169
Alignment:
Q  490 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 589  Q
    |||||||| | |||||||||||||||||| ||| ||| ||| || || |  |||||||| ||||  ||||||||||| ||||||||| | | | | || |    
T  20289302 attctagccataccaaagtctgatattttgggattcaactcctcgtctaacaagatgttacttgtctttaaatctctgtgtataattctcaatttggaat 20289203  T
Q  590 ctctatgaagatacattattcctcgagctattcc 623  Q
    ||||||||||||| |  | |||||||||||||||    
T  20289202 ctctatgaagataaagcaatcctcgagctattcc 20289169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 293
Target Start/End: Complemental strand, 20279827 - 20279703
Alignment:
Q  169 cttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatata 268  Q
    |||||||| || ||||| || |||| || |||||| | |||||||||    |||||||  ||||| || |||||||| |  ||||||||||||||| | |    
T  20279827 cttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctcccgctaacgatctctagtaccaaaacaccaaagctaaaaa 20279728  T
Q  269 catctgatttctctgagaaaagtcc 293  Q
    |||||||||||||||| ||||||||    
T  20279727 catctgatttctctgaaaaaagtcc 20279703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 20289529 - 20289417
Alignment:
Q  220 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatat 319  Q
    |||||||  ||||| | ||||||||| || ||||||||||||||| | ||||||||||||||||| || |||||   |||||| ||||| || |  ||||    
T  20289529 tttcttctcccgctaataatctctagtaacaaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcattgcgtattcgggagatatat 20289430  T
Q  320 aaccactacattt 332  Q
    ||||||| |||||    
T  20289429 aaccactgcattt 20289417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 626
Target Start/End: Original strand, 20062632 - 20062715
Alignment:
Q  543 gatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttc 626  Q
    |||||| ||||| || |||||||| ||||||||| | ||||  || ||||| |||||||||| || ||||||||||||||||||    
T  20062632 gatgttacttgccttcaaatctctgtgtataattctgagtcgggaatctctgtgaagatacaataatcctcgagctattccttc 20062715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 331
Target Start/End: Complemental strand, 20243907 - 20243796
Alignment:
Q  220 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatat 319  Q
    ||||||| |||| | ||||||||||| |  || |||||||||||| | ||||||||||||||||| || | |||   ||||||||||||||| | ||| |    
T  20243907 tttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatgt 20243808  T
Q  320 aaccactacatt 331  Q
    | ||||||||||    
T  20243807 agccactacatt 20243796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 626
Target Start/End: Original strand, 20168098 - 20168234
Alignment:
Q  490 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 589  Q
    |||||||| | |||||| ||||||||||||||| ||| ||| ||||| |  ||||  || ||||| || ||||||||||| |||||| | ||||| || |    
T  20168098 attctagccataccaaattctgatatttttggattcaactcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctggaat 20168197  T
Q  590 ctctatgaagatacattattcctcgagctattccttc 626  Q
    |||| || ||||| |  | ||| ||||||||||||||    
T  20168198 ctctgtggagatatagcaatccacgagctattccttc 20168234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 626
Target Start/End: Complemental strand, 20279561 - 20279425
Alignment:
Q  490 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 589  Q
    |||||||| | |||||||||||||||||||||| ||| ||| ||||| |  | ||  || ||||| || |||||||| || |||||| | ||||| || |    
T  20279561 attctagccataccaaagtctgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctgtgaataattcttagtctggaat 20279462  T
Q  590 ctctatgaagatacattattcctcgagctattccttc 626  Q
    |||| |||||||| |  | ||| ||||||||||||||    
T  20279461 ctctgtgaagatatagcaatccgcgagctattccttc 20279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 20231835 - 20231744
Alignment:
Q  220 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcagg 311  Q
    ||||||| |||| | ||||||||||| |  || |||||||||||| | ||||||||||||||||| || | |||   |||||||||||||||    
T  20231835 tttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcagg 20231744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 626
Target Start/End: Original strand, 20005402 - 20005527
Alignment:
Q  501 accaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaaga 600  Q
    ||||||||| |||||||||||| |||  |  || || || ||||| || |||||||| | |||||||||||| ||||| || || || |||||||| |||    
T  20005402 accaaagtcagatatttttggattcaggttctcgtctagcaagatattacttgctttcatatctctatgtatgatttttagcctggaatctctatgcaga 20005501  T
Q  601 tacattattcctcgagctattccttc 626  Q
    || |  | ||| ||||||||||||||    
T  20005502 taaagcaatccacgagctattccttc 20005527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 20167901 - 20167977
Alignment:
Q  250 aaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccact 326  Q
    ||||||||||||||| | ||||||||||||||||| || |||||   ||||||||| || || | |||||| |||||    
T  20167901 aaaacaccaaagctaaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatatagccact 20167977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 602
Target Start/End: Complemental strand, 20243658 - 20243546
Alignment:
Q  490 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 589  Q
    |||||||| | |||||||||||||||||||||| ||| ||| ||||| |  | ||  || ||||| || ||||||||||| |||||| | || || || |    
T  20243658 attctagccagaccaaagtctgatatttttggattcaactcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaat 20243559  T
Q  590 ctctatgaagata 602  Q
    |||| ||||||||    
T  20243558 ctctgtgaagata 20243546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 626
Target Start/End: Complemental strand, 20294696 - 20294572
Alignment:
Q  502 ccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagat 601  Q
    |||||||| |||||||||||| ||| ||| ||||| |  | ||  || ||||| || ||||||||||| |||||| | || || || ||||  |||||||    
T  20294696 ccaaagtccgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctcggtgaagat 20294597  T
Q  602 acattattcctcgagctattccttc 626  Q
    |||  | ||||||||||||||||||    
T  20294596 acagcaatcctcgagctattccttc 20294572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 626
Target Start/End: Original strand, 40823849 - 40823985
Alignment:
Q  490 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 589  Q
    |||||||| | |||||||||||||||||||||| ||| ||| || || |  |||||||| ||||  |||| |||||| ||||||||| | | | | ||      
T  40823849 attctagccataccaaagtctgatatttttggattcaactcctcgtctaacaagatgttacttgtctttagatctctgtgtataattctcaatttggaag 40823948  T
Q  590 ctctatgaagatacattattcctcgagctattccttc 626  Q
    ||||||||||||| |  | ||||||||||||||||||    
T  40823949 ctctatgaagataaagcaatcctcgagctattccttc 40823985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 40823639 - 40823734
Alignment:
Q  237 aatctctagcaataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacattt 332  Q
    ||||||||| |  ||||||||||||||| | ||||||||||||||||| || |||||   ||| ||||||||||| | ||||||||| || |||||    
T  40823639 aatctctagtatcaaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataaccgctgcattt 40823734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 569
Target Start/End: Complemental strand, 36366510 - 36366446
Alignment:
Q  505 aagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatg 569  Q
    ||||||||||| |||||| |||||||  |||||||||  ||||||||||| || | |||||||||    
T  36366510 aagtctgatatctttggattcatctctccatcaagtagaatgttgcttgccttaagatctctatg 36366446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 28433476 - 28433416
Alignment:
Q  218 tatttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 278  Q
    ||||||||  ||||||||  || ||||||||||| |||||||||||| |||||||||||||    
T  28433476 tatttctttttccgcttattatttctagcaataatacaccaaagctaaatacatctgattt 28433416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 1050751 - 1050700
Alignment:
Q  227 gtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 278  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||| |||||    
T  1050751 gtccacttacaatctctagcaataatacgccaaagctaaatacatcagattt 1050700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 1077653 - 1077602
Alignment:
Q  227 gtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 278  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||| |||||    
T  1077653 gtccacttacaatctctagcaataatacgccaaagctaaatacatcagattt 1077602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 1091532 - 1091481
Alignment:
Q  227 gtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 278  Q
    |||| |||||||||||||| ||||| |||||||||||| ||||||| |||||    
T  1091532 gtccacttacaatctctagtaataatacaccaaagctaaatacatcagattt 1091481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 604
Target Start/End: Original strand, 5488882 - 5488990
Alignment:
Q  496 gctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctat 595  Q
    |||||||||||||||| ||| ||||| ||||| ||| ||||||| |  || ||||||| ||| | |||||||||||| ||| | ||| | || |||  ||    
T  5488882 gctaaaccaaagtctgctatctttgggatcatatcaacatcaagaagaatattgcttgttttcatatctctatgtatgattcttagtgtagaatcttgat 5488981  T
Q  596 gaagataca 604  Q
    |||||||||    
T  5488982 gaagataca 5488990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 536
Target Start/End: Original strand, 37713838 - 37713873
Alignment:
Q  501 accaaagtctgatatttttggaatcatctcatcatc 536  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37713838 accaaagtctgatatctttggaatcatctcatcatc 37713873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 2698252 - 2698310
Alignment:
Q  220 tttcttcgtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 278  Q
    ||||| || ||||| ||||||||||| | ||| |||||||| |||||||||||||||||    
T  2698252 tttctgcggccgctcacaatctctagtagtaatacaccaaaactatatacatctgattt 2698310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 527
Target Start/End: Complemental strand, 20233328 - 20233288
Alignment:
Q  487 acaattctagctaaaccaaagtctgatatttttggaatcat 527  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  20233328 acaattctagcaagaccaaaatctgatatttttggaatcat 20233288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 527
Target Start/End: Complemental strand, 22127312 - 22127272
Alignment:
Q  487 acaattctagctaaaccaaagtctgatatttttggaatcat 527  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  22127312 acaattctagcaagaccaaaatctgatatttttggaatcat 22127272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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