View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_low_20 (Length: 323)

Name: NF11109_low_20
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_low_20
NF11109_low_20
[»] chr7 (3 HSPs)
chr7 (10-307)||(42467491-42467788)
chr7 (10-308)||(42474152-42474450)
chr7 (10-308)||(42479687-42479985)
[»] chr1 (1 HSPs)
chr1 (10-140)||(26046509-26046639)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 42467788 - 42467491
Alignment:
Q  10 agaatgatatgcaacgctttccatagaaatgggctttagggaagtagacgctgtttctcataattccagtgacgtaagtcctagaatgagatgacaaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42467788 agaatgatatgcaacgctttccatagaaatgggctttagggaagtagacgctgtttctcataattccagtgacgtaagtcctagaatgagatgacaaaaa 42467689  T
Q  110 actagcaaaaagtgtcactccgtctagtgttctcacctcttttaattccattaatgtccgatctaatttgaaaattatcgggtcctcaccacaacatata 209  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  42467688 actagcaaaaagtgtcactccatctagtgttctcacctcttttcattccattagtgtccgatctaatttgaaaattattgggtcctcaccacaacatata 42467589  T
Q  210 tgaattacaaatatatttactttgtgatctatcataaaactctctttcgccgagtttttggcagtagaactctctaataggcatttgggcggaggtac 307  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42467588 tgaatgacaaatatatttcctttgtgatctatcataaagctctctttcgccgagtttttggcagtagaactctctaataggcatttgggcggaggtac 42467491  T

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Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 42474450 - 42474152
Alignment:
Q  10 agaatgatatgcaacgctttccatagaaatgggctttagggaagtagacgctgtttctcataattccagtgacgtaagtcctagaatgagatgacaaaaa 109  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42474450 agaatgatatgcaacgctttccatagaaacggactttagggaagtagactctgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaa 42474351  T
Q  110 actagcaaaaagtgtcactccgtctagtgttctcacctcttttaattccattaatgtccgatctaatttgaaaattatcgggtcctcaccacaacatata 209  Q
    || |||||||||||||||||| |||||||||||||| |||||  ||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||    
T  42474350 accagcaaaaagtgtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatata 42474251  T
Q  210 tgaattacaaatatatttactttgtgatctatcataaaactctctttcgccgagtttttggcagtagaactctctaataggcatttgggcggaggtact 308  Q
    ||||  |||||||||||| ||||||| |||||||||||  ||||||||| | ||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  42474250 tgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcggaggtact 42474152  T

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Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 42479985 - 42479687
Alignment:
Q  10 agaatgatatgcaacgctttccatagaaatgggctttagggaagtagacgctgtttctcataattccagtgacgtaagtcctagaatgagatgacaaaaa 109  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  42479985 agaatgatatgcaacgttttccatagaaacggactttagggaagtagacactgtttctcattattccagtggcgtaagtcctagaatgagatgacaaaaa 42479886  T
Q  110 actagcaaaaagtgtcactccgtctagtgttctcacctcttttaattccattaatgtccgatctaatttgaaaattatcgggtcctcaccacaacatata 209  Q
    ||||||||||||||| ||||| | ||||| ||||||||||||  ||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||    
T  42479885 actagcaaaaagtgttactccatttagtgatctcacctctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatata 42479786  T
Q  210 tgaattacaaatatatttactttgtgatctatcataaaactctctttcgccgagtttttggcagtagaactctctaataggcatttgggcggaggtact 308  Q
    |||| ||||||||||||| ||||||| |||||||||||  || |||||| | | |||||||||||||||||||||  ||||||||||||||||||||||    
T  42479785 tgaactacaaatatatttcctttgtgctctatcataaatttccctttcgaccaatttttggcagtagaactctctgctaggcatttgggcggaggtact 42479687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 26046509 - 26046639
Alignment:
Q  10 agaatgatatgcaacgctttccatagaaatgggctttagggaagtagacgctgtttctcataattccagtgacgtaagtcctagaatgagatgacaaaaa 109  Q
    ||||||||||||||||||||||||| ||| |  |||||| ||||||||  ||||| |||||| |||||  || || |||||| |||||||| ||||| ||    
T  26046509 agaatgatatgcaacgctttccataaaaacgaactttagagaagtagatactgttcctcatatttccaaggaggtcagtccttgaatgagaagacaagaa 26046608  T
Q  110 actagcaaaaagtgtcactccgtctagtgtt 140  Q
    ||||||||| || ||  |||| |||||||||    
T  26046609 actagcaaatagagttgctccatctagtgtt 26046639  T

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