View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_low_21 (Length: 294)

Name: NF11109_low_21
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_low_21
NF11109_low_21
[»] chr5 (17 HSPs)
chr5 (19-286)||(30337164-30337431)
chr5 (19-286)||(30750846-30751113)
chr5 (19-286)||(30061572-30061839)
chr5 (19-286)||(30712067-30712334)
chr5 (19-286)||(30484601-30484868)
chr5 (19-286)||(30675927-30676194)
chr5 (53-283)||(29854545-29854775)
chr5 (53-283)||(29873408-29873638)
chr5 (19-259)||(30437013-30437238)
chr5 (59-263)||(30207762-30207966)
chr5 (63-286)||(30401321-30401544)
chr5 (58-286)||(30241032-30241245)
chr5 (84-238)||(17417355-17417509)
chr5 (63-263)||(30329503-30329700)
chr5 (59-263)||(30476615-30476819)
chr5 (59-149)||(30520401-30520491)
chr5 (59-149)||(30560741-30560831)
[»] chr4 (2 HSPs)
chr4 (19-286)||(20295221-20295488)
chr4 (59-238)||(52353201-52353380)
[»] chr3 (1 HSPs)
chr3 (59-282)||(25292590-25292813)
[»] chr7 (1 HSPs)
chr7 (28-260)||(26708541-26708758)
[»] chr1 (2 HSPs)
chr1 (196-238)||(7580415-7580457)
chr1 (198-238)||(7100785-7100825)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 30337431 - 30337164
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  30337431 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttacgttcagcaatattatctaacctccttgtaatctctttcaacctgtt 30337332  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30337331 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagc 30337232  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337231 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30337164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 30750846 - 30751113
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750846 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 30750945  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30750946 accaatctcatggcgaaacatgatgttctttggtttgaaagaggtacatcctctcagtcgacaagacttaatcgagtactcatcaaggatatcatcgagc 30751045  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30751046 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30751113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 30061572 - 30061839
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| |||||||||||||||| |||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30061572 gatctgggatttccctaagagtgccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgtt 30061671  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061672 accaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 30061771  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061772 acataaacaccatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30061839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 30712334 - 30712067
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30712334 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgtt 30712235  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  30712234 accaatctcatggcgaaacatgatgttctttagtttgaaagaggtaaatcctctcagtcgaaaagactcgatcgagtactcatcaaggatatcatcgagc 30712135  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30712134 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30712067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 30484601 - 30484868
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||| ||||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  30484601 gatctgggattaccctaagagtttcacccgtctgtagagaaaacttgttctttctttcagcaatatcatctaacctccttgtaatctctttcaacctgtt 30484700  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  30484701 accaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctgagtcgacaagactcgatcgagtactcatcaaggatatcatcgagc 30484800  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30484801 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30484868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 30676194 - 30675927
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30676194 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 30676095  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
     |||||||||  ||||||| |||||||||||||||||| |||||   ||||||| ||| ||| ||||||||| || ||||||||||||||||||||||||    
T  30676094 gccgatctcactgcgaaacatgatgttctttggtttgagagaggatgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagc 30675995  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30675994 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 30675927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 53 - 283
Target Start/End: Original strand, 29854545 - 29854775
Alignment:
Q  53 tagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggt 152  Q
    |||| |||||||||||||||| |||||||||||||| ||  |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  29854545 tagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttggt 29854644  T
Q  153 ttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccata 252  Q
    ||||||||||| |||||||| ||| ||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  29854645 ttgaaagaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccata 29854744  T
Q  253 gcttaatagagagttctttgaattgtttctt 283  Q
     |||||||||| | ||| ||| |||||||||    
T  29854745 ccttaatagagtggtctgtgacttgtttctt 29854775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 283
Target Start/End: Original strand, 29873408 - 29873638
Alignment:
Q  53 tagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggt 152  Q
    |||| |||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||||||||| |||||||| ||||||| ||||||    
T  29873408 tagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttggt 29873507  T
Q  153 ttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccata 252  Q
    || |||||| |  ||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||    
T  29873508 ttaaaagagattgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccata 29873607  T
Q  253 gcttaatagagagttctttgaattgtttctt 283  Q
     |||||||||| | ||| ||| |||||||||    
T  29873608 ccttaatagagcggtctgtgacttgtttctt 29873638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 30437013 - 30437238
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| || |||||||||||||| |||| || |  ||||||||||||||||||| ||||||||||  ||| ||||||| |||||||||||| ||||||||    
T  30437013 gatctgggctttccctaagagttacacccgtatggagagaaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgtt 30437112  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    |||||||| |||||||||||| |               |||| || |||  ||||||||||| ||||||||||||  ||||||||||||| |||||||||    
T  30437113 accgatcttatggcgaaacttta---------------aagatgtgaattttctcagtcgactagacttgatcgaacactcatcaaggatgtcatcgagc 30437197  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaat 259  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  30437198 acataaacagcatctttgaggtcttgtagccataccttaat 30437238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 59 - 263
Target Start/End: Original strand, 30207762 - 30207966
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 158  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| || || || || |||||| | | |||  ||||||||||||||||||||    
T  30207762 aaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaatctcacgacaaaaaatgatgttctttggtttgaaa 30207861  T
Q  159 gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa 258  Q
    || |   |  |  | ||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||| |    
T  30207862 gatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttta 30207961  T
Q  259 tagag 263  Q
    |||||    
T  30207962 tagag 30207966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 63 - 286
Target Start/End: Original strand, 30401321 - 30401544
Alignment:
Q  63 ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 162  Q
    ||||||||| | |||||||||||||| || || |||||||||||||| |||||||| ||||||| | ||||||||  |||||||||||| |||||||||     
T  30401321 ttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttctttgggttgaaagaga 30401420  T
Q  163 taaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga 262  Q
       | ||||  ||||||  ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||| |    
T  30401421 atgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaatata 30401520  T
Q  263 gagttctttgaattgtttcttctc 286  Q
    |   ||||||| |||| |||||||    
T  30401521 gctgtctttgacttgtctcttctc 30401544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 58 - 286
Target Start/End: Complemental strand, 30241245 - 30241032
Alignment:
Q  58 aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa 157  Q
    ||||||| ||| | || |||||||||||||| |||||||   |||||||||  |||||||||||||||||||||||||||||||                    
T  30241245 aaaacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgttaccgatctcatggcgaaacttgag--------------- 30241161  T
Q  158 agaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta 257  Q
    |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| ||||    
T  30241160 agaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccatacctta 30241061  T
Q  258 atagagagttctttgaattgtttcttctc 286  Q
    ||||||   ||| ||| ||||||||||||    
T  30241060 atagagcagtctgtgacttgtttcttctc 30241032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 17417509 - 17417355
Alignment:
Q  84 tcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaag 183  Q
    ||||| || ||||||||||||||||  ||||| |  ||||||||| |||||||  |||||||||||||||||||| |||   | ||||| || |||| ||    
T  17417509 tcatcaaatctccttgtaatctcttccaacctttggccgatctcacggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccag 17417410  T
Q  184 acttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgag 238  Q
    ||| ||| ||| |||||||||| |||||||| |||||||||||| ||||||||||    
T  17417409 actcgattgagcactcatcaagaatatcatctagcacataaacaacatctttgag 17417355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 263
Target Start/End: Complemental strand, 30329700 - 30329503
Alignment:
Q  63 ttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg 162  Q
    ||||||||| |||||||||| | |||||| || || ||||| ||||| ||||| ||   |||||||||||||||    ||||||||||||||||||||||    
T  30329700 ttgttcttattttcagcaatcttatctaatcttctggtaatttctttcaacctatt---gatctcatggcgaaatacaatgttctttggtttgaaagagg 30329604  T
Q  163 taaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga 262  Q
       | ||||| | ||||| ||||| |||| || ||||||||||||||||||| |||||||| | | |||||||||  | ||| | ||||| |||||||||    
T  30329603 atgagcctctaattcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaataga 30329504  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 263
Target Start/End: Original strand, 30476615 - 30476819
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 158  Q
    ||||||||  |||||||||||||| | ||| || ||||||||||| ||||| ||||| || ||||| ||| ||||||||   ||||||||| | ||||||    
T  30476615 aaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaatgttctttaggttgaaa 30476714  T
Q  159 gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa 258  Q
     |||   |  || | |||| || ||| |  || ||  | |||||||| |||||||| |||||||| |||||||||||||| | ||| | ||||| |||||    
T  30476715 caggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccataccttaa 30476814  T
Q  259 tagag 263  Q
    |||||    
T  30476815 tagag 30476819  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 30520491 - 30520401
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttcttt 149  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||  | || || | |||||||||| |||| ||||||    
T  30520491 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt 30520401  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 30560831 - 30560741
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttcttt 149  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||  | || || | |||||||||| |||| ||||||    
T  30560831 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt 30560741  T

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Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 20295488 - 20295221
Alignment:
Q  19 gatctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 118  Q
    ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  20295488 gatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttaaacctgct 20295389  T
Q  119 accgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagc 218  Q
    |||||||||||||||||||  ||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  20295388 accgatctcatggcgaaacgcgatgttcattggtttgaaagagttaaatcctctcagtcgaccagactcgatcgagtactcatcaaggatatcaccgagc 20295289  T
Q  219 acataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctc 286  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20295288 acataaacagcatctttgaggtcttgtaaccattgcttaatagagagttctttgaattgtttcttctc 20295221  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 52353201 - 52353380
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 158  Q
    |||||||||||| ||||||||||  | ||| || ||||||||||| ||||| || ||||| || || ||||| ||||||   || || |||||||||||     
T  52353201 aaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatcatgacgaaacacaatattttttggtttgaat 52353300  T
Q  159 gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgag 238  Q
    || |  || ||  | ||||||| ||| ||||||||  | |||||||||||||||||||| || |||||||||||||||||    
T  52353301 gacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgag 52353380  T

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Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 59 - 282
Target Start/End: Complemental strand, 25292813 - 25292590
Alignment:
Q  59 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa 158  Q
    ||||||||||||| || ||||||||||||| || ||||||||||||||||| ||| |||| || || | |||| ||||| ||||||||||||||||||||    
T  25292813 aaacttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgatgttctttggtttgaaa 25292714  T
Q  159 gaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa 258  Q
    ||||   | ||||| ||||||| ||| |||||| |  |||||||||||||||||||||||||||| ||| |||||||||| | ||||| ||||| |||||    
T  25292713 gaggatgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaa 25292614  T
Q  259 tagagagttctttgaattgtttct 282  Q
    ||||| | ||| ||| ||||||||    
T  25292613 tagagcgatctgtgacttgtttct 25292590  T

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Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 260
Target Start/End: Original strand, 26708541 - 26708758
Alignment:
Q  28 tttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgatctc 127  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||  ||| ||||||| |||||||||||| ||||||||||||||||     
T  26708541 tttccctaagagttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgttaccgatctt 26708640  T
Q  128 atggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaaca 227  Q
    ||||||||||               || |||||||| |||  | ||||||||| ||||||||||||| | ||||||||||| |||||||||||||| |||    
T  26708641 atggcgaaac---------------tttaaagaggtgaattttttcagtcgactagacttgatcgagcattcatcaaggatgtcatcgagcacatataca 26708725  T
Q  228 gcatctttgaggtcttgtaaccatagcttaata 260  Q
     |||||||||||||||||| ||||| |||||||    
T  26708726 acatctttgaggtcttgtagccataccttaata 26708758  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 7580457 - 7580415
Alignment:
Q  196 actcatcaaggatatcatcgagcacataaacagcatctttgag 238  Q
    ||||||||||||||||||| |||||||| || |||||||||||    
T  7580457 actcatcaaggatatcatcaagcacatacaccgcatctttgag 7580415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 7100785 - 7100825
Alignment:
Q  198 tcatcaaggatatcatcgagcacataaacagcatctttgag 238  Q
    ||||||||||||||||| |||||||| || |||||||||||    
T  7100785 tcatcaaggatatcatcaagcacatacaccgcatctttgag 7100825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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