View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_low_24 (Length: 275)
Name: NF11109_low_24
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 2442361 - 2442102
Alignment:
| Q |
1 |
atgaaacgaagggttgggtgaagtttcaaagttaataggaggagacttcatttcttcttgttaagttataaattcaacaagacattcaaaatagttgtta |
100 |
Q |
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| T |
2442361 |
atgaaacgaagggttgggtgaagtttcaaagttaataggaggagacttcatttcttcttgttaagttataaattcaacaagacattcaaaatagttgtta |
2442262 |
T |
|
| Q |
101 |
nnnnnnnnnn-aatggcattcaaaatagttgttattgaaaattgtaaaaagaagaaaaatgtcggagggagttcatttatagttgctcaccagtcgcaac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442261 |
tttttttttttaatggcattcaaaatagttgttattgaaaattgtaaaaagaagaaaaatgtcggagggagttcatttatagttgctcaccagtcgcaac |
2442162 |
T |
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| Q |
200 |
ttcaaatagaagtgtaattttataatcagaggggagaacaatatggtttaagcagctctc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442161 |
ttcaaatagaagtgtaattttataatcagaggggagaacaatatggtttaagcagctctc |
2442102 |
T |
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