View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_low_25 (Length: 275)
Name: NF11109_low_25
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 12286762 - 12286992
Alignment:
| Q |
19 |
ctgaaacggtttgagaatgaagatattacattggatgagattgtggaagtgtttgataaacttgttgagttgtgtggtggtgaagatgggaatggtaatg |
118 |
Q |
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| T |
12286762 |
ctgaaacagtttgagaatgaagatattacattggatgagattgtggaagtgtttgataaacttgttgagttgtgtggtggtgaagatgggaatggtaatg |
12286861 |
T |
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| Q |
119 |
ctgctattgcaacgaaaaatgggggtgttgagttggtttgtggtgtttttgaaaagataaggagtagtgatggatctcgagttgttcttgtttcgggttt |
218 |
Q |
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| T |
12286862 |
ctgctattgcaacgaaaaatgggggtgttgagttggtttgtggtgtttttgaaaagataaggagtagtgatggatctcgagttgttcttgtttcgggttt |
12286961 |
T |
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| Q |
219 |
gaatgctctggcgttgttgcttcatggttag |
249 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12286962 |
gaatgctctggcgttgttgcttcatggttag |
12286992 |
T |
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