View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_low_27 (Length: 251)
Name: NF11109_low_27
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 43150816 - 43150598
Alignment:
| Q |
11 |
gagatgaaccagcatatacatgaacgtatatcaaacacattatattatgtacgttttttattgactttgaattaatgaacagtgcctattctcatgaaca |
110 |
Q |
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| T |
43150816 |
gagatgaaccagcatatacatgaacgtatatcaaacacattat-----gtacgttttttattgactttgaattaatgaacagtgcctattctcatgaaca |
43150722 |
T |
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| Q |
111 |
agctataatgctagaactatatagtagtaagtcttatgcatacatatgtcacattaatatggttggatgagtttatatgttttcttaattgactttgaag |
210 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43150721 |
agctattatgctagaactatatagtagtaagtcttatgcatacatatgtcacattaatatggttggatgagtttatatgttttcttaattgactttgaag |
43150622 |
T |
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| Q |
211 |
tattgatgttccacagtttattat |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
43150621 |
tattgatgttccacagtttattat |
43150598 |
T |
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