View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_low_3 (Length: 582)
Name: NF11109_low_3
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 2 - 565
Target Start/End: Complemental strand, 40516208 - 40515641
Alignment:
| Q |
2 |
taagacagtaacttagtacggatttgataggtcagctattttatagagaaagggttatatgtggggctggggctgctagaataatcaactttttactatt |
101 |
Q |
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| T |
40516208 |
taagacagtaacttagtacggatttgataggtcagctattttatagagaaagggttatatgtggggctggggctgctagaataatcaactttttactatt |
40516109 |
T |
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| Q |
102 |
cacatataagaaactactaaaaaataacagtgttcaggcttttgttgctgcttatgatacagattaattattattgtttatattattacagtgagtacag |
201 |
Q |
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| T |
40516108 |
cacatataagaaacta---aaaaataacagtgttcaggcttttgttgctgcttatgatacagattaattattattgtttatattattaaagtgagtacag |
40516012 |
T |
|
| Q |
202 |
agagagatgcattttccccttcnnnnnnnctttcccttttggccccattccattgtcttgctatttattaaggtcatttatacatttggctatattgcag |
301 |
Q |
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| T |
40516011 |
agagagatgcattttccccttctttttttcttttccttttggccccattccattgtcttgctatttattaaggtcatttatacatttggctatattgcag |
40515912 |
T |
|
| Q |
302 |
gtgtacgaaatcctaagccactgataaaagccgaggaatgcggaattgctttactacaaggaaagggacagaatgtagagaacccctggttctacacgtg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40515911 |
gtgtacgaaatcctaagccactgataaaagccgaggaatgcggaattgctttactacaaggaaagggacagaatgtagagaacccctggttctacacgtg |
40515812 |
T |
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| Q |
402 |
gcctttaatcatcatacaataggacaaaaacattacac-------tactccatttcaaaccttagttttgtgtttcattatatgctttttatttttcatc |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40515811 |
gcctttaatcatcatacaataggacaaaaacattacactactgactactccatttcaaaccttagttttgtgtttcattatatgctttttatttttcatc |
40515712 |
T |
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| Q |
495 |
tttacaccatcttcgtatttgaattgagcctaatcaaatttaataaaattggcttgagtaatgaagactat |
565 |
Q |
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| T |
40515711 |
tttacaccatcttcgtatttgaattgagcctaatcaaatttaataaaattggcttgagtaatgaagactat |
40515641 |
T |
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