View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11109_low_37 (Length: 201)

Name: NF11109_low_37
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11109_low_37
NF11109_low_37
[»] chr8 (21 HSPs)
chr8 (15-185)||(4693446-4693616)
chr8 (15-170)||(21436173-21436328)
chr8 (15-185)||(4730593-4730763)
chr8 (22-185)||(4684802-4684965)
chr8 (18-185)||(4741279-4741446)
chr8 (39-185)||(4754732-4754878)
chr8 (15-185)||(4825706-4825876)
chr8 (15-172)||(4896977-4897135)
chr8 (15-186)||(4772590-4772761)
chr8 (15-185)||(4908795-4908965)
chr8 (18-186)||(4846039-4846207)
chr8 (18-185)||(4800798-4800965)
chr8 (19-185)||(4918901-4919067)
chr8 (18-185)||(4886465-4886632)
chr8 (15-185)||(10450896-10451066)
chr8 (15-185)||(10455322-10455492)
chr8 (18-185)||(4865715-4865882)
chr8 (15-185)||(4719689-4719859)
chr8 (15-88)||(4709499-4709572)
chr8 (22-179)||(4790435-4790592)
chr8 (17-185)||(4722370-4722543)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 4693446 - 4693616
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||  |||||||| |||    
4693446 cagagaacaggaaacacaaataagaaaaatgatatctacagctttgggataattctatttgagttgatcactggaaagaaagcaatggtgagagcatctg 4693545  T
115 gagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    |||||||||||||  || |||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
4693546 gagaaaacattcacatacttcaatgggttatttccttagttaaaggaggagatattcgaaacattgttgat 4693616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 21436328 - 21436173
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctg 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||| ||||||||||    
21436328 cagagaacaggaaacacaaataaaaaaaatgatatctacagctttggaataattctatttgtgttgatcactggtcatgaagcaataataagagcagctg 21436229  T
115 gagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatatt 170  Q
    |||||||||||||  || || |||||||||||||  || |||||| ||||||||||    
21436228 gagaaaacattcacatacttgaatgggttattcctgtaattgaagaaggagatatt 21436173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 4730593 - 4730763
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctg 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||| |||||||||||| | |||| | | |    
4730593 cagagaacaggaaacacaaataagaaaaatgatatttacagctttgggataattctatttgagttggtcactgggaagaaagcaatagtaagagaatccg 4730692  T
115 gagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    |||||||||||||  || ||||||||||||||||| ||||| ||||||| |||||||||||  ||||||||    
4730693 gagaaaacattcacatacttcaatgggttattcccatagttaaaggaggggatattcaaaatgttgttgat 4730763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 4684802 - 4684965
Alignment:
22 caggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctggagaaaa 121  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||| || |||||| | |||||||||     
4684802 caggaaacacaaataagaaaaatgatatctatagctttggtataattctatttgtgttgatcaccgggaagaaagcactagtgagagaatctggagaaag 4684901  T
122 cattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    ||||||  || ||||||||||||||||  | ||| || ||||||||||||||||||||||||||    
4684902 cattcacatacttcaatgggttattcctattgttaaaagaggagatattcaaaacattgttgat 4684965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 4741279 - 4741446
Alignment:
18 agaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctggag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | || ||| |||| | |||| ||| ||    
4741279 agaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgagttgatcactggccaaaaggcactaataaaagcatctgaag 4741378  T
118 aaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    ||| ||||||  || ||||||||||||||||  |||||||||||||||||||||||||  ||||||||    
4741379 aaaccattcacatacttcaatgggttattccaatagttgaaggaggagatattcaaaatgttgttgat 4741446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 4754732 - 4754878
Alignment:
39 aaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctggagaaaacattcatttaattcaat 138  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||| || |||||||| | ||||||||||||||  || ||||||    
4754732 aaaaatgatatctatagctttgggataattctatttgagttgatcacttgaaagaaagcattagtgagagcatccggagaaaacattcacatacttcaat 4754831  T
139 gggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||    
4754832 gggttattcccatagttaaaggaggagatattcaaaacattgttgat 4754878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 4825876 - 4825706
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  | |||||| |||  | |||| |||    
4825876 cagagaacaggaaacacaaataagaaaaatgatatctacagctttgggataattctatttgagttgatcactggccaaaaagcactaacaaaagcatctg 4825777  T
115 gagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    | |||||| ||||  || || |||||||||||||| |||||||||| ||||||||||||||  ||||||||    
4825776 gtgaaaaccttcacatacttgaatgggttattcccatagttgaagggggagatattcaaaatgttgttgat 4825706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 4897135 - 4896977
Alignment:
15 cagagaacaggaaacacaaataagaaaaa-tgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagct 113  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||     |||||||| | | |||||||    
4897135 cagagaacaggaaacacaaataaaaaaaaatgatatctacagctttggaataattctatttgtgttgatcactggtcgtcaagcaatagtaaaagcagct 4897036  T
114 ggagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattca 172  Q
    ||||||||||||||| || ||||| ||||||||||| || ||||||| |||||||||||    
4897035 ggagaaaacattcatatacttcaacgggttattcccataattgaaggtggagatattca 4896977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 4772761 - 4772590
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||  ||||||||||||||||||||| || | |||||| | |    
4772761 cagagaacaggaaacacaaataagaaaaatgatatctacagctttgggatagttctacttgaattgatcactggaaagaaagcattagtaagagcatcag 4772662  T
115 gagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgatg 186  Q
    |||||| ||||||  || |||||||||||| |||  |||||||| |||||||||||| || |||| ||||||    
4772661 gagaaagcattcacatacttcaatgggttactccaatagttgaaagaggagatattcgaagcattattgatg 4772590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 4908965 - 4908795
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctg 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||     | |||||| | ||||||||||    
4908965 cagagaacaggaaacacaaataaaaaaaatgatatctacagctttggaataattctatttgtgttaatcagtggtcgtcacgcaatagtaagagcagctg 4908866  T
115 gagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    ||||||| |||||  || || | ||||||||||| ||||||||| ||||||||||||||||  ||||||||    
4908865 gagaaaatattcacatacttgattgggttattcctttagttgaaagaggagatattcaaaatgttgttgat 4908795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 4846207 - 4846039
Alignment:
18 agaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctggag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| ||||||||| | || | |||| |||  |    
4846207 agaacaggaaacacaaataagaaaaatgatatctacagctttggaattattctatttgagctgatcactggcaagaaagcactcataaaagcacctgatg 4846108  T
118 aaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgatg 186  Q
    ||| ||||||  || |||||||||||||||| ||| |  |||| |||||||||||||||||| ||||||    
4846107 aaaccattcacatacttcaatgggttattccattaataaaaggtggagatattcaaaacattattgatg 4846039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 4800965 - 4800798
Alignment:
18 agaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctggag 117  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| | |||||||||| ||||||||| |||| | |||| |||  |    
4800965 agaacaggaaacacaaacaagaaaaatgatatttacagctttggaattattctatttgagctgatcactggcaagaaagcactaataaaagcacctgatg 4800866  T
118 aaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    ||| ||||||  || ||||||||||| |||||||| |  |||| ||||||||||||||||||||||||    
4800865 aaaccattcacatacttcaatgggttcttcccttaataaaaggtggagatattcaaaacattgttgat 4800798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 4919067 - 4918901
Alignment:
19 gaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctggaga 118  Q
    |||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||     |||||||| | ||||||||||||||    
4919067 gaacgggaaacacaaataaaaaaaatgatatctacagctttgggataattctatttgtgttgataaccgggcgtcaagcaatagtaagagcagctggaga 4918968  T
119 aaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    ||| |||||  || || |||||||||||||| |||||||||||||||||||||| ||  ||||||||    
4918967 aaatattcacatacttgaatgggttattcccatagttgaaggaggagatattcagaaagttgttgat 4918901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 4886632 - 4886465
Alignment:
18 agaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctggag 117  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||| ||||||||||||  | |||||| |||| | |||| ||| |     
4886632 agaaccggaaacacaaataagaaaaacgatatctacagctttgggattattctatttgagttgatcactggccaaaaagcactaataaaagcatctgaaa 4886533  T
118 aaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    ||| ||||||  || || |||||||||||||| |||||||||||||||||||||||||  ||||||||    
4886532 aaaccattcacatacttgaatgggttattcccatagttgaaggaggagatattcaaaatgttgttgat 4886465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 10450896 - 10451066
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctg 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||||||| ||    |||||| ||   |||||| |||    
10450896 cagagaacaggaaacacaaataaaaaaaatgatatctacagctttggaattattttatttgagttgatcaccggtcgaaaagcagtagcaagagcatctg 10450995  T
115 gagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
      ||| |||||||  || ||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
10450996 atgaatacattcacatacttcaatgggttattcccatagttgaaggaggagatattcaaaatgttgttgat 10451066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 10455322 - 10455492
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctg 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||||||| ||    |||||| ||   |||||| |||    
10455322 cagagaacaggaaacacaaataaaaaaaatgatatctacagctttggaattattttatttgagttgatcaccggtcgaaaagcagtagcaagagcatctg 10455421  T
115 gagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
      ||| |||||||  || ||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
10455422 atgaatacattcacatacttcaatgggttattcccatagttgaaggaggagatattcaaaatgttgttgat 10455492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 4865882 - 4865715
Alignment:
18 agaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctggag 117  Q
    |||||| |||| ||||| || |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||  ||||| | |||  |    
4865882 agaacaagaaagacaaacaaaaaaaatgatatctacagcttcggaattattctatttgagttgatcactggaaaaaaagcaatagcgagagtatctgatg 4865783  T
118 aaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    || || ||||  || | ||||||||||||||| |||||||||||||| ||||||||||  ||||||||    
4865782 aataccttcacatactgcaatgggttattcccatagttgaaggaggaaatattcaaaatgttgttgat 4865715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 4719689 - 4719859
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctg 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||| ||    |||||| || | | |||| | |    
4719689 cagagaacaggaaacacaaataaaaaaaatgatatctacagctttgggataattctatttgagctgatcaccggccgaaaagcactagtaaaagcatccg 4719788  T
115 gagaaaacattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    ||||||| |||||  || ||||||||| ||||||  || ||||| | ||| ||||||||||||||||||||    
4719789 gagaaaaaattcacatacttcaatgggctattcctataattgaaagtggaaatattcaaaacattgttgat 4719859  T

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Target: chr8; HSP #19
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 4709499 - 4709572
Alignment:
15 cagagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactgg 88  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
4709499 cagagaacaggaaacacaaataaaaaaaatgatatctacagctttgggataattctatttgagttgatcactgg 4709572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 4790592 - 4790435
Alignment:
22 caggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagcaataatgagagcagctggagaaaa 121  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||| ||||||||| |||||||||||| |    ||| ||  || ||||||    
4790592 caggaaacacaaataagaaaaatgatatctttagctttgggataattctatttgagttgatcaccggaaagaaagcacttgaaagatcatatgaagaaaa 4790493  T
122 cattcatttaattcaatgggttattcccttagttgaaggaggagatattcaaaacatt 179  Q
     |||||| || | ||||||||| ||||| || || ||| |||| ||||||||||||||    
4790492 tattcatatactgcaatgggttgttcccataattaaagcaggaaatattcaaaacatt 4790435  T

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Target: chr8; HSP #21
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 4722370 - 4722543
Alignment:
17 gagaacaggaaacacaaataagaaaaatgatatctacagctttggaataattctatttgtgttgatcactggaaagaaagc---aataatgagagcagct 113  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    |||||   | || | |||||| |     
4722370 gagaacatgaagcacaaataagaaaaatgatatctacagctttgggataattctatttgagttgatcactggtcgaaaagcactagtactaagagcatcc 4722469  T
114 ggagaaaacattcatttaattc--aatgggttattcccttagttgaaggaggagatattcaaaacattgttgat 185  Q
    ||||||||||||||  || |||  |||||| ||||||  || | ||||| ||| ||||||||||||||||||||    
4722470 ggagaaaacattcacatacttcaaaatgggctattcctataatcgaaggcggaaatattcaaaacattgttgat 4722543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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