View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_low_4 (Length: 560)
Name: NF11109_low_4
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 51112957 - 51112416
Alignment:
| Q |
1 |
tgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaatatgcttcagacgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112957 |
tgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaatatgcttcagacgct |
51112858 |
T |
|
| Q |
101 |
gcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgctgctgagaaaacca |
200 |
Q |
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| T |
51112857 |
gcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgctgctgagaaaacca |
51112758 |
T |
|
| Q |
201 |
aaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgaaaagaccaaacattatgctgctgacgaaagctatgcagatga |
300 |
Q |
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| T |
51112757 |
aaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgagaagaccaaacattatgctgctgacgaaagctatgcagatga |
51112658 |
T |
|
| Q |
301 |
tgatgatgatgcagaggacaacagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaaggccaaagaatatgct |
400 |
Q |
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| T |
51112657 |
tgatgatgatgcagaggacaacagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaaggccaaagaatatgct |
51112558 |
T |
|
| Q |
401 |
actaatgctgctcagaaggctgcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagacca |
500 |
Q |
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| T |
51112557 |
actgatgctgctcagaaggctgcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaaaacca |
51112458 |
T |
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| Q |
501 |
aagagtatgcaggtgatgctacagagaagaccaaagagtatg |
542 |
Q |
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| T |
51112457 |
aagagtatgcaggtgatgctacagagaagaccaaagagtatg |
51112416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 465 - 542
Target Start/End: Complemental strand, 51112460 - 51112383
Alignment:
| Q |
465 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgctacagagaagaccaaagagtatg |
542 |
Q |
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| T |
51112460 |
ccaaagagtatgcaggtgatgctacagagaagaccaaagagtatgcaggcgatgctgcacagaaaaccaaagactatg |
51112383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 542
Target Start/End: Complemental strand, 51112427 - 51112350
Alignment:
| Q |
465 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgctacagagaagaccaaagagtatg |
542 |
Q |
| |
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| T |
51112427 |
ccaaagagtatgcaggcgatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatg |
51112350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 504
Target Start/End: Complemental strand, 51112096 - 51112028
Alignment:
| Q |
436 |
agaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaaga |
504 |
Q |
| |
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| T |
51112096 |
agaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaaga |
51112028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 542
Target Start/End: Complemental strand, 51112278 - 51112230
Alignment:
| Q |
494 |
aagaccaaagagtatgcaggtgatgctacagagaagaccaaagagtatg |
542 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||| |||| |
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| T |
51112278 |
aagaccaaagattatgcaggtgatgcagcagagaagaccaaagattatg |
51112230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 520
Target Start/End: Complemental strand, 51112013 - 51111958
Alignment:
| Q |
465 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgct |
520 |
Q |
| |
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||||||| ||||| ||||| ||||||||||| ||||||| ||||||||||||||| |
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| T |
51112013 |
ccaaagactatgctggtgaagctgcacaaaaagccaaagattatgcaggtgatgct |
51111958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 51112360 - 51112301
Alignment:
| Q |
433 |
caaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcaca |
492 |
Q |
| |
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| T |
51112360 |
caaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtgatgctgcaca |
51112301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 529
Target Start/End: Complemental strand, 51112280 - 51112210
Alignment:
| Q |
459 |
acaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgctacagagaag |
529 |
Q |
| |
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||||| ||||||| |||||||||||||| ||| | ||||||||||| |||| | |||||||| || ||||| |
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| T |
51112280 |
acaagaccaaagattatgcaggtgatgcagcagagaagaccaaagattatggaagtgatgctgcacagaag |
51112210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 505
Target Start/End: Complemental strand, 51111939 - 51111874
Alignment:
| Q |
440 |
tatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagag |
505 |
Q |
| |
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| T |
51111939 |
tatgccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgctcaaaaaaccaaagag |
51111874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 537
Target Start/End: Complemental strand, 51112065 - 51112028
Alignment:
| Q |
500 |
aaagagtatgcaggtgatgctacagagaagaccaaaga |
537 |
Q |
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||||| ||||||||||||||| |||||||||||||||| |
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| T |
51112065 |
aaagactatgcaggtgatgctgcagagaagaccaaaga |
51112028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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