View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_low_7 (Length: 514)
Name: NF11109_low_7
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 4864965 - 4865344
Alignment:
| Q |
15 |
agtttcttgtttatcgagtttgccatagttgtgtgagaagagggtgaagaaggattgattatgttgttgttgttgaggtttggaatgctagaagttacat |
114 |
Q |
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| T |
4864965 |
agtttcttgtttatcgagtttgccatagttgtgtgagaagagggtgaagaaggattgattatgttgttgttgttgaggtttggaatgctagaagttacat |
4865064 |
T |
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| Q |
115 |
ttatttattcttataaacattgagaggtaggaagggaaatttctgtgaaattgacaactttgaaatggtcaaaagatctctttgttacaaaatccacatt |
214 |
Q |
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| T |
4865065 |
ttatttattcttataaacattgaaaggtaggaagggaaatttctgtgaaattgacaactttgaaatggtcaaaagatctctttgttacaaaaaccacatt |
4865164 |
T |
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| Q |
215 |
aaaataattatggctgcattttaaagtagtcacatt----nnnnnnnncagtggcgactacatcaccattttcatattttaaactctcactctcattaag |
310 |
Q |
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| T |
4865165 |
aaaataattatggctgcattttaaagtagtcacattaaaaaaaaaaaacagtggcgactacatcaccattatcatattttaaactctcactctcattaag |
4865264 |
T |
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| Q |
311 |
tgaaagagctggtcatgtaaatgaaagaggggtaaaatttcccatacatcattggagtatgtaatttttattaagaaagc |
390 |
Q |
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| T |
4865265 |
tgaaagagctggtcctgtaaatgaaatagaggtaaaatttcccatacatcattggagtatgtaatttttattaagaaagc |
4865344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 424 - 503
Target Start/End: Original strand, 4865344 - 4865431
Alignment:
| Q |
424 |
cagatgagaaagagggcacataacatcactaaagacagttag--------gcaagttatctcttaattaggaaagatttcattttcat |
503 |
Q |
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| T |
4865344 |
cagatgagaaagagggcacataacatcactaaagacagttagcttggagcgcaagttatctcttaattaggaaagatttcattttcat |
4865431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 4673749 - 4673814
Alignment:
| Q |
21 |
ttgtttatcgagtttgccatagttgtgtgagaagagggtgaagaaggattgattatgttgttgttg |
86 |
Q |
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| T |
4673749 |
ttgtttatggagtttgccatagctgtgtgagaagagggtgaagaagggttgattctgttgttgttg |
4673814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 4711134 - 4711028
Alignment:
| Q |
23 |
gtttatcgagtttgccatagttgtgtgagaagagggtgaagaaggattgattatgttgttgttgttgaggtttggaatgctagaagttacatttatttat |
122 |
Q |
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| T |
4711134 |
gtttatggagtttgccatagttatgtgaaaatagagtgaagaagagtagattttgtttttcttgttgagtgttaggatgcttgaagttgcatttatttat |
4711035 |
T |
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| Q |
123 |
tcttata |
129 |
Q |
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| T |
4711034 |
tgttata |
4711028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 4637897 - 4637942
Alignment:
| Q |
21 |
ttgtttatcgagtttgccatagttgtgtgagaagagggtgaagaag |
66 |
Q |
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| T |
4637897 |
ttgtttatggagtttgccatagctgtgtgagaagagagtgaagaag |
4637942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 4644735 - 4644780
Alignment:
| Q |
21 |
ttgtttatcgagtttgccatagttgtgtgagaagagggtgaagaag |
66 |
Q |
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| T |
4644735 |
ttgtttatggtgtttgccatagttgtgtgagaagagagtgaagaag |
4644780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 4654539 - 4654583
Alignment:
| Q |
21 |
ttgtttatcgagtttgccatagttgtgtgagaagagggtgaagaa |
65 |
Q |
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| T |
4654539 |
ttgtttatggagtttgccatatctgtgtgagaagagtgtgaagaa |
4654583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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