View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11109_low_8 (Length: 499)
Name: NF11109_low_8
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 36120903 - 36120434
Alignment:
| Q |
18 |
atttcttcccctttatctcctcttctaacttctccatgatttctcttgcctcctttagagctttttcccattcattacctttcttaatcaatgcaatcca |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36120903 |
atttcttcccctttatatcctcttctaacttctccatgatttctcttgcctcctttagagctttttcccattcattacctttcttaatcaatgcaatcca |
36120804 |
T |
|
| Q |
118 |
tgaacccagtgcaagctatatataatttacacatacaaaaataggcttttgtaatctcaaaataatcctaggttaaatttgcacaacataaagaaaaaag |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36120803 |
tgaacccagtgcaagctatagataatttacacatacaaaaataggcttttgtaatctcaaaataatcctaggttaaatttgcacaacataaagaaaaaag |
36120704 |
T |
|
| Q |
218 |
agataaactatcaccttttcatcagataaattagcccaaaagcgagcccgagatctttgatatggatcaggaggcagcaatggatattgcttccatgttt |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36120703 |
agataaactatcaccttttcatcagataacttagcccaaaagcgagcccgagatctttgataaggatcaggaggcagcaatggatattgcttccatgttt |
36120604 |
T |
|
| Q |
318 |
catcaatgtattcaagaataatcagtgactctgcaattgatttctggccatgaacaagaactggaactttcttatgaaccgggttcaattccaaaagaag |
417 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36120603 |
catcaatgtattcaagaataatcagcgactctgcaattgacttctggccatgaacaagaactggaactttcttatgaaccgggttcatttccaaaagaag |
36120504 |
T |
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| Q |
418 |
actacttttgttgaagatatcttcttctatataatcaaactcaacacccttgagttttagagcccattca |
487 |
Q |
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| T |
36120503 |
actacttttgttgaagatatcttcttctatataatcaaactcaacacccttgagttttagagcccattca |
36120434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 245 - 471
Target Start/End: Complemental strand, 36134012 - 36133786
Alignment:
| Q |
245 |
aaattagcccaaaagcgagcccgagatctttgatatggatcaggaggcagcaatggatattgcttccatgtttcatcaatgtattcaagaataatcagtg |
344 |
Q |
| |
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|||| ||||||||| ||||| ||| ||||| |||||||| |||||| | |||| ||||||||||||||||||||||||| ||||| ||||| | || |
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| T |
36134012 |
aaatcagcccaaaaacgagcaagagctctttcatatggatgttgaggcaaaagtggagattgcttccatgtttcatcaatgtactcaaggataatgaatg |
36133913 |
T |
|
| Q |
345 |
actctgcaattgatttctggccatgaacaagaactggaactttcttatgaaccgggttcaattccaaaagaagactacttttgttgaagatatcttcttc |
444 |
Q |
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|||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||||| |
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| T |
36133912 |
actctgcaattggtttctgagcatgaacaagaaccggaaccttcttgtgaaccgggttcaattccaaaaggagaggagttttgttgaagatatcttcttc |
36133813 |
T |
|
| Q |
445 |
tatataatcaaactcaacacccttgag |
471 |
Q |
| |
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|| ||| ||| | | ||||||||||| |
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| T |
36133812 |
tacatactcataatttacacccttgag |
36133786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 36134550 - 36134517
Alignment:
| Q |
18 |
atttcttcccctttatctcctcttctaacttctc |
51 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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| T |
36134550 |
atttcttcccctttatctcctcttctatcttctc |
36134517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 300 - 446
Target Start/End: Complemental strand, 2684974 - 2684829
Alignment:
| Q |
300 |
gatattgcttccatgtttcatcaatgtattcaagaataatcagtgactctgcaattgatttctggccatgaacaagaactggaactttcttatgaaccgg |
399 |
Q |
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||||||||| |||| ||||||||||||||||| ||||| | |||||||| ||||| ||| ||| |||| |||||||||||||| ||||| |||| ||| |
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| T |
2684974 |
gatattgctgtcatgcttcatcaatgtattcaaagataatgaatgactctggaattggtttttgggcatggacaagaactggaaccttcttgtgaa-cgg |
2684876 |
T |
|
| Q |
400 |
gttcaattccaaaagaagactacttttgttgaagatatcttcttcta |
446 |
Q |
| |
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|||| |||||||| | || |||| |||||||||||||||||||| |
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| T |
2684875 |
gttccattccaaatggggagagctttcgttgaagatatcttcttcta |
2684829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 23817485 - 23817565
Alignment:
| Q |
271 |
tctttgatatggatcaggaggcagcaatggatattgcttccatgtttcatcaatgtattcaagaataatcagtgactctgc |
351 |
Q |
| |
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|||||| |||||||||| ||||| | ||||| ||| ||||| || |||||||| ||||||||||| | ||||||||||| |
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| T |
23817485 |
tctttggtatggatcagaaggcaatattggattttgtttccaagtctcatcaatatattcaagaatcacaagtgactctgc |
23817565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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