View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11109_low_9 (Length: 498)
Name: NF11109_low_9
Description: NF11109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11109_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 54791100 - 54791581
Alignment:
| Q |
1 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791100 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
54791199 |
T |
|
| Q |
101 |
ccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggata |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54791200 |
ccgaagctgtcaaccaacctgtaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgattctggata |
54791299 |
T |
|
| Q |
201 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54791300 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaat |
54791399 |
T |
|
| Q |
301 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791400 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
54791499 |
T |
|
| Q |
401 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaac |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791500 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaac |
54791581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 54778045 - 54777565
Alignment:
| Q |
1 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54778045 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
54777946 |
T |
|
| Q |
101 |
ccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggata |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
54777945 |
ccgaagctgtcaaccaacctgtaccgcaggttgagaattatgt-tggccatggacaggtataatcgttaacattaagagcaaccttaacgattctggata |
54777847 |
T |
|
| Q |
201 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54777846 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaat |
54777747 |
T |
|
| Q |
301 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
54777746 |
ggtttcaagaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggaatggaattcaatggacatgctggccagttcagacattt |
54777647 |
T |
|
| Q |
401 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaac |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54777646 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccctcggaacaaaggaaggctgagaac |
54777565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 52283758 - 52284239
Alignment:
| Q |
1 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
52283758 |
aacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtttttggagactgacctagcaaatgaagcagaccaaatacctcccccgcctttga |
52283857 |
T |
|
| Q |
101 |
ccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggata |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| | || ||| ||||||| |
|
|
| T |
52283858 |
ccgaagctgtcaaccaacctgcaccacaggttgagaactatgtctggccatggacaggcataattgttaatattaagagcaaactgaatgattctggata |
52283957 |
T |
|
| Q |
201 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52283958 |
ctggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaat |
52284057 |
T |
|
| Q |
301 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284058 |
ggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacattt |
52284157 |
T |
|
| Q |
401 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaac |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284158 |
atggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaac |
52284239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 479
Target Start/End: Original strand, 799049 - 799506
Alignment:
| Q |
16 |
caaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgtcaacc |
115 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||||||||| |||||| |||||||||| | | |||||| || |
|
|
| T |
799049 |
caaaaagcaaaccacctggctctggcaaagtttttgaggactgacttagcaaatgaagcagaccaagtacctcgcccggctttgactgtagctgttgtcc |
799148 |
T |
|
| Q |
116 |
aacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggatactggctaaaggaatt |
215 |
Q |
| |
|
|||||| | | |||||||| || || ||||| |||||||||||| | || ||||| | |||| | | ||| ||||||||| || ||||||||| |
|
|
| T |
799149 |
aacctgtcc---aagttgagaactacgtttggccgtggacaggcatacttgtcaacataa---gcaaatcacatgattctggatacttgcaaaaggaatt |
799242 |
T |
|
| Q |
216 |
tgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaatggtttcatgaatgca |
315 |
Q |
| |
|
||| ||||||| ||| |||| ||| ||| ||||| ||||||||| || |||||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
799243 |
tgctaagtacaaaccgttggctgttcatacgttcttgatggatggtaactccgtggctgttatagacttcaacaatgactggaatgggtttatgaatgca |
799342 |
T |
|
| Q |
316 |
agtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggccagttcagacatttatggatgggttgcac |
415 |
Q |
| |
|
||||| ||||||||| |||||| ||||||| || ||| || ||||| |||||||| | |||| |||||| ||||||||| ||||| || |||||||||| |
|
|
| T |
799343 |
agtgagcttgagaaatgctttgagactaaacgtcgtggaaaaaaggattggaattccatggacttgcaggacagttcagagatttacggttgggttgcac |
799442 |
T |
|
| Q |
416 |
gtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgag |
479 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
799443 |
gtgaagatgattataattgtccagggttgattggggagtaccttcgcaacaaaggaaggctgag |
799506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University