View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1110_high_10 (Length: 289)

Name: NF1110_high_10
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1110_high_10
NF1110_high_10
[»] chr6 (11 HSPs)
chr6 (29-280)||(11193370-11193621)
chr6 (111-280)||(13022110-13022279)
chr6 (111-280)||(12991483-12991652)
chr6 (124-200)||(13004414-13004491)
chr6 (201-250)||(24469620-24469670)
chr6 (121-182)||(6512408-6512469)
chr6 (199-262)||(21845921-21845985)
chr6 (204-262)||(22404482-22404541)
chr6 (201-262)||(23230191-23230253)
chr6 (201-254)||(24479842-24479896)
chr6 (230-266)||(18171524-18171560)
[»] chr4 (26 HSPs)
chr4 (111-278)||(37741393-37741561)
chr4 (112-208)||(48014833-48014929)
chr4 (32-103)||(47410586-47410657)
chr4 (193-258)||(25096114-25096179)
chr4 (146-208)||(12782142-12782205)
chr4 (146-208)||(15430666-15430729)
chr4 (146-208)||(15437280-15437343)
chr4 (146-208)||(21419015-21419078)
chr4 (146-208)||(40794228-40794291)
chr4 (201-249)||(17711128-17711177)
chr4 (199-254)||(11252352-11252407)
chr4 (146-208)||(3718372-3718435)
chr4 (146-200)||(14571062-14571117)
chr4 (204-262)||(16928733-16928792)
chr4 (149-200)||(19861196-19861247)
chr4 (157-200)||(40617721-40617764)
chr4 (209-262)||(8968305-8968359)
chr4 (121-191)||(53093733-53093803)
chr4 (149-182)||(37104168-37104201)
chr4 (201-260)||(1832278-1832338)
chr4 (230-262)||(9849962-9849994)
chr4 (202-257)||(10108062-10108118)
chr4 (149-181)||(12237394-12237426)
chr4 (211-262)||(15047583-15047635)
chr4 (211-262)||(15106789-15106841)
chr4 (149-181)||(19865571-19865603)
[»] chr3 (19 HSPs)
chr3 (111-262)||(11636111-11636261)
chr3 (111-207)||(22994495-22994591)
chr3 (146-208)||(9380047-9380110)
chr3 (203-254)||(18747639-18747690)
chr3 (146-208)||(31548587-31548650)
chr3 (159-208)||(3839843-3839892)
chr3 (111-191)||(11784065-11784146)
chr3 (202-262)||(34276666-34276727)
chr3 (159-208)||(41976371-41976420)
chr3 (146-208)||(16243202-16243265)
chr3 (111-208)||(28008844-28008942)
chr3 (146-208)||(54736751-54736814)
chr3 (147-208)||(29344673-29344735)
chr3 (109-169)||(15196137-15196198)
chr3 (149-181)||(10107542-10107574)
chr3 (149-181)||(17532597-17532629)
chr3 (108-144)||(30220878-30220914)
chr3 (149-181)||(52198345-52198377)
chr3 (146-208)||(53815007-53815071)
[»] scaffold0009 (1 HSPs)
scaffold0009 (111-208)||(38801-38898)
[»] chr2 (9 HSPs)
chr2 (201-262)||(28930083-28930145)
chr2 (193-262)||(29144443-29144513)
chr2 (193-260)||(22378046-22378114)
chr2 (193-262)||(21905535-21905605)
chr2 (204-262)||(27907751-27907810)
chr2 (203-262)||(18758110-18758170)
chr2 (201-248)||(27540491-27540539)
chr2 (149-181)||(15466210-15466242)
chr2 (230-266)||(18120803-18120839)
[»] chr7 (24 HSPs)
chr7 (193-254)||(4450488-4450549)
chr7 (122-208)||(18563346-18563434)
chr7 (193-262)||(11804508-11804578)
chr7 (146-208)||(9273935-9273998)
chr7 (146-208)||(9865543-9865606)
chr7 (209-262)||(3585757-3585811)
chr7 (201-262)||(25692598-25692660)
chr7 (159-208)||(9080426-9080475)
chr7 (193-280)||(6046319-6046406)
chr7 (146-200)||(17730009-17730064)
chr7 (146-200)||(20081549-20081604)
chr7 (233-280)||(23298144-23298191)
chr7 (201-254)||(8052655-8052709)
chr7 (205-262)||(39270501-39270559)
chr7 (226-266)||(8317690-8317730)
chr7 (204-254)||(10611529-10611581)
chr7 (226-266)||(13287959-13287999)
chr7 (201-229)||(18986970-18986998)
chr7 (201-229)||(19001598-19001626)
chr7 (201-260)||(20175906-20175966)
chr7 (203-262)||(26249303-26249363)
chr7 (149-181)||(26556550-26556582)
chr7 (146-208)||(45288038-45288102)
chr7 (146-208)||(45291374-45291438)
[»] chr8 (8 HSPs)
chr8 (201-262)||(15176657-15176719)
chr8 (201-262)||(23868055-23868117)
chr8 (201-272)||(24389556-24389627)
chr8 (146-208)||(12582254-12582317)
chr8 (201-259)||(28858649-28858708)
chr8 (111-208)||(2559800-2559898)
chr8 (201-262)||(13313473-13313535)
chr8 (230-280)||(24091131-24091181)
[»] chr5 (19 HSPs)
chr5 (146-208)||(2837576-2837639)
chr5 (193-254)||(24658517-24658579)
chr5 (146-200)||(32837119-32837174)
chr5 (193-262)||(28666301-28666371)
chr5 (201-249)||(24320749-24320798)
chr5 (230-278)||(19052895-19052943)
chr5 (146-208)||(18031746-18031809)
chr5 (146-208)||(21827941-21828004)
chr5 (146-200)||(22937964-22938019)
chr5 (111-169)||(26908229-26908288)
chr5 (146-200)||(37214802-37214857)
chr5 (201-262)||(23338750-23338812)
chr5 (193-254)||(25400954-25401016)
chr5 (159-208)||(21336642-21336691)
chr5 (229-266)||(23215081-23215118)
chr5 (159-208)||(40916787-40916836)
chr5 (149-182)||(42061526-42061559)
chr5 (208-263)||(23387779-23387835)
chr5 (146-208)||(39191367-39191431)
[»] chr1 (6 HSPs)
chr1 (121-186)||(34733186-34733251)
chr1 (201-254)||(15542534-15542588)
chr1 (202-262)||(14782339-14782400)
chr1 (119-190)||(7634897-7634968)
chr1 (209-262)||(9403149-9403203)
chr1 (149-185)||(2793339-2793375)
[»] scaffold0002 (1 HSPs)
scaffold0002 (201-262)||(95433-95495)
[»] scaffold0555 (1 HSPs)
scaffold0555 (228-280)||(6247-6299)
[»] scaffold0270 (3 HSPs)
scaffold0270 (146-208)||(960-1024)
scaffold0270 (146-200)||(4329-4384)
scaffold0270 (146-200)||(11459-11514)
[»] scaffold1993 (1 HSPs)
scaffold1993 (146-208)||(1081-1144)
[»] scaffold0005 (1 HSPs)
scaffold0005 (146-200)||(246259-246314)
[»] scaffold0757 (1 HSPs)
scaffold0757 (146-208)||(4599-4663)
[»] scaffold0035 (1 HSPs)
scaffold0035 (149-181)||(61637-61669)
[»] scaffold0016 (1 HSPs)
scaffold0016 (208-263)||(4633-4689)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 11193621 - 11193370
Alignment:
Q  29 agaagcactatctgacaatgtggtagatgaatggccaaatgcatcataatcaaccccagaacccatgttatcatataacctaatgacatcttgtcattac 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11193621 agaagcactatctgacaatgtggtagatgaatggccaaatgcatcataatcaaccccagaacccatgttatcatataacctgatgacatcttgtcattac 11193522  T
Q  129 gtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaattgtcaagactttgggaaga 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| |||||||||    
T  11193521 gtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaattaaagcaagaaaaactgaagaattgtcaagaccttgggaaga 11193422  T
Q  229 caagaatgaatattcaagaggtctcagaagacttacaacagggaagaattat 280  Q
    |||||||||| ||||| |||  |||||||||||||||| |||||| ||||||    
T  11193421 caagaatgaagattcacgagtcctcagaagacttacaatagggaaaaattat 11193370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 111 - 280
Target Start/End: Complemental strand, 13022279 - 13022110
Alignment:
Q  111 atgacatcttgtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaatt 210  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||    
T  13022279 atgacatattgtcattacgtaatttttaatgtaaattcatgatatttggagttcacaagcaagcttaaacaacaagaaaagcatgaaaaactgaagaatt 13022180  T
Q  211 gtcaagactttgggaagacaagaatgaatattcaagaggtctcagaagacttacaacagggaagaattat 280  Q
    |||||||| || |||||| ||||||||| |||||||||| |||||||||||||||| ||||| |||||||    
T  13022179 gtcaagaccttaggaagaaaagaatgaagattcaagaggcctcagaagacttacaatagggaggaattat 13022110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 111 - 280
Target Start/End: Complemental strand, 12991652 - 12991483
Alignment:
Q  111 atgacatcttgtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaatt 210  Q
    |||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||  |||||||| |||||||| ||||||| |    
T  12991652 atgacatcttgtaattacgtattttttaatgtaaattcatgatatttggagttcacaagcaagcttaatcaacaagaaaagcaagaaaaattgaagaact 12991553  T
Q  211 gtcaagactttgggaagacaagaatgaatattcaagaggtctcagaagacttacaacagggaagaattat 280  Q
    |||||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||    
T  12991552 gtcaagaccttaggaagacaagaatgaagattcaagaggcctcagaagacttacaacagggaggaattat 12991483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 13004414 - 13004491
Alignment:
Q  124 attacgtaattttttatgtaaatttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||| ||||||  ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||    
T  13004414 attacgtaattttatatgtatttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 13004491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 24469670 - 24469620
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggt 250  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||||    
T  24469670 ctgaagaattgtcaagactatgggaagaccaagaatgaagattcaagaggt 24469620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 6512408 - 6512469
Alignment:
Q  121 gtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacag 182  Q
    |||||| ||| ||||||  |||||||| ||||| ||| ||||||||||||||||||||||||    
T  6512408 gtcatttcgttatttttattgtaaattcatgatcttttgagttcacaagcaagcttaaacag 6512469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 21845921 - 21845985
Alignment:
Q  199 aactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||||| ||||||||||||||||||||||| |||||| || |||||||||| || || ||||||    
T  21845921 aactgaaaaattgtcaagactttgggaagacaaagaataaagattcaagaggccttaggagactt 21845985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 22404482 - 22404541
Alignment:
Q  204 aagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||| |||| ||||||||||||||| |||||||||| |||||||||| ||||| ||||||    
T  22404482 aagatttgtgaagactttgggaagaccaagaatgaagattcaagaggcctcaggagactt 22404541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 23230191 - 23230253
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||||||||||||||||| ||| ||| |||||| |||||||||| || || ||||||    
T  23230191 ctgaagaattgtcaagactttggggagaccaacaatgaagattcaagaggcctaaggagactt 23230253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 24479896 - 24479842
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctca 254  Q
    ||||||||||||||||||| |||||||| |||||| ||| |||||| ||||||||    
T  24479896 ctgaagaattgtcaagactatgggaagaccaagaaagaagattcaataggtctca 24479842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 18171524 - 18171560
Alignment:
Q  230 aagaatgaatattcaagaggtctcagaagacttacaa 266  Q
    |||||||||||||||||||  ||||||||||||||||    
T  18171524 aagaatgaatattcaagagacctcagaagacttacaa 18171560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 111 - 278
Target Start/End: Complemental strand, 37741561 - 37741393
Alignment:
Q  111 atgacatcttgtcattacgtaatttttta-tgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaat 209  Q
    |||| |||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  37741561 atgaaatcttgtcgttacgtaatttttaaatgtaaattcatgatatttggagttcacaagcaagcttaaacagcaagaaaaacaagaaaaactgaagaat 37741462  T
Q  210 tgtcaagactttgggaagacaagaatgaatattcaagaggtctcagaagacttacaacagggaagaatt 278  Q
    ||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||| |||||    
T  37741461 tgtcaagaccttgggaagacaagaatgaagattcaagaggccttagaagacttacaacagggaggaatt 37741393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 48014929 - 48014833
Alignment:
Q  112 tgacatcttgtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||| |||  |||||||| ||||||||||||||||    
T  48014929 tgacattttgtcattacgtaatttttaatgtaaaatcatgttatttggagttcacaagcaagcttatacaacaagaaaagcaagaaaaactgaagaa 48014833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 47410586 - 47410657
Alignment:
Q  32 agcactatctgacaatgtggtagatgaatggccaaatgcatcataatcaaccccagaacccatgttatcata 103  Q
    |||||||| ||||| |||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||    
T  47410586 agcactatatgacattgtggtagatgaatggccaggtgcatcatagtcaaccctagaacccatgttatcata 47410657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 25096179 - 25096114
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagacaagaatgaatattcaagaggtctcagaag 258  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  25096179 aagaacaactcaagaattgtcaagaccttgggaagacaagaatgaagattcaagaggcctcagaag 25096114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 12782142 - 12782205
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  ||||| |||||||||||||| ||| |||||||| ||||||||||||||||    
T  12782142 tttatgatatttttgagtttacaagcaagcttaagcagcaagaaaagcaagaaaaactgaagaa 12782205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 15430729 - 15430666
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||||| ||||    
T  15430729 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaactggagaa 15430666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 15437343 - 15437280
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||||| ||||    
T  15437343 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaactggagaa 15437280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 21419015 - 21419078
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  21419015 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaaccgaagaa 21419078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 40794228 - 40794291
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  40794228 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaaccgaagaa 40794291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 17711177 - 17711128
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagagg 249  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||||||    
T  17711177 ctgaagaattgtcaagactttcggaagaccaagaatgaagattcaagagg 17711128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 11252352 - 11252407
Alignment:
Q  199 aactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctca 254  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  11252352 aactgaaga-ttgtcaagactttgggaagacaaagaatgaatatacaagaggcctca 11252407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 3718372 - 3718435
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||  |||||||| ||||||||| ||||||    
T  3718372 tttatgatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaaccgaagaa 3718435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 14571062 - 14571117
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||    
T  14571062 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 14571117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 16928792 - 16928733
Alignment:
Q  204 aagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    |||| |||| |||||||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  16928792 aagatttgtgaagactttggcaagaccaagaatgaagattcaagaggcctcagaagactt 16928733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 19861247 - 19861196
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||| |||||||||||||||||||||||| ||  |||| ||||||||    
T  19861247 atgatattttgagttcacaagcaagcttaaacagcaaagaaagcaagaaaaa 19861196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 40617764 - 40617721
Alignment:
Q  157 tggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||    
T  40617764 tggagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 40617721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 8968305 - 8968359
Alignment:
Q  209 ttgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    |||| |||||||||||||||| ||||||||| |||||||||  ||||||||||||    
T  8968305 ttgtgaagactttgggaagaccaagaatgaagattcaagagacctcagaagactt 8968359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 53093733 - 53093803
Alignment:
Q  121 gtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaag 191  Q
    |||||||| | ||||||  |||||||| ||| | ||| |||||||||||||||||||||||| ||| ||||    
T  53093733 gtcattacattatttttattgtaaattcatggtcttttgagttcacaagcaagcttaaacagcaaggaaag 53093803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 37104201 - 37104168
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaacag 182  Q
    ||||||||| ||||||||||||||||||||||||    
T  37104201 atgatattttgagttcacaagcaagcttaaacag 37104168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 1832278 - 1832338
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagac 260  Q
    ||||||| |||| || || ||||||||| |||||| |||||||||||||| ||||||||||    
T  1832278 ctgaagacttgtgaaaaccttgggaagatcaagaaagaatattcaagaggcctcagaagac 1832338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 9849962 - 9849994
Alignment:
Q  230 aagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||||||| |||||||||||||||||||||||    
T  9849962 aagaatgaaaattcaagaggtctcagaagactt 9849994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 10108118 - 10108062
Alignment:
Q  202 tgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaa 257  Q
    |||||| |||| ||||||||||||||| || |||||||||| ||||||| |||||||    
T  10108118 tgaagatttgtgaagactttgggaagaccatgaatgaatatgcaagaggcctcagaa 10108062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 12237394 - 12237426
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  12237394 atgatattttgagttcacaagcaagcttaaaca 12237426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 15047635 - 15047583
Alignment:
Q  211 gtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||||||||||| |||||||||| |||||||||| |||  |||||||    
T  15047635 gtcaagactttgggaagatcaagaatgaagattcaagaggcctcgaaagactt 15047583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 15106789 - 15106841
Alignment:
Q  211 gtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||||||||||| |||||||||| |||||||||| |||  |||||||    
T  15106789 gtcaagactttgggaagatcaagaatgaagattcaagaggcctcgaaagactt 15106841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 19865603 - 19865571
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  19865603 atgatattttgagttcacaagcaagcttaaaca 19865571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 11636111 - 11636261
Alignment:
Q  111 atgacatcttgtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaatt 210  Q
    |||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  11636111 atgatatcttgtcattacgtaatttttaatgtaaattcatgatatttagagttcacaagcaagcttaaacac-aagaaaagcaagaaaaactgaagaatt 11636209  T
Q  211 gtcaagactttgggaagacaagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||| || |||||||||||||||| |||||||||| ||||||||||||    
T  11636210 gtcaagaccttaggaagacaagaatgaagattcaagaggcctcagaagactt 11636261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 22994591 - 22994495
Alignment:
Q  111 atgacatcttgtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaaga 207  Q
    |||||| ||||||||||| ||||||||  |||||  ||||||||||| |||| ||||||||||||||||||| ||| |||| |||||||||||||||    
T  22994591 atgacaccttgtcattacataatttttagtgtaatattatgatattttgagtccacaagcaagcttaaacagcaaggaaagcaagaaaaactgaaga 22994495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 9380047 - 9380110
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| || ||||||||| ||||||||| ||||||    
T  9380047 tttatgatatttttgagttcacaagcaagcttaagcaataagaaaagcaagaaaaaccgaagaa 9380110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 18747690 - 18747639
Alignment:
Q  203 gaagaattgtcaagactttgggaagacaagaatgaatattcaagaggtctca 254  Q
    |||||||||||||||||||||||||| || |||||| |||||||||| ||||    
T  18747690 gaagaattgtcaagactttgggaagataaaaatgaagattcaagaggcctca 18747639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 31548587 - 31548650
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  |||||||||| ||||||||| |||||||||||| |||||||| |||||||    
T  31548587 tttatgatatttttgagttcacaaccaagcttaagcagtaagaaaagcaagaaaaattgaagaa 31548650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 3839843 - 3839892
Alignment:
Q  159 gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  3839843 gagttcacaagcaagcttaagcagcaagaaaagcaagaaaaaccgaagaa 3839892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 11784065 - 11784146
Alignment:
Q  111 atgacatcttgtcattacgtaattttttatgtaaatttatga-tatttggagttcacaagcaagcttaaacagtaagaaaag 191  Q
    ||||||||||||||||||||||| ||||||||||||| || |  ||||||| ||||||||  | ||||| ||| ||||||||    
T  11784065 atgacatcttgtcattacgtaatcttttatgtaaattgatcacaatttggaattcacaaggcaacttaagcagcaagaaaag 11784146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 34276666 - 34276727
Alignment:
Q  202 tgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||||||||||| |||||||| |||||||||| | |||||||| ||||| ||||||    
T  34276666 tgaagaattgtcaagactgtgggaagaccaagaatgaagagtcaagaggcctcaggagactt 34276727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 41976371 - 41976420
Alignment:
Q  159 gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||||| |||||||| |||||||| || |||||||||||||    
T  41976371 gagttcacaagcaagattaaacagcaagaaaagcaacaaaaactgaagaa 41976420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 16243202 - 16243265
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  ||||||||||||||| |||| ||| |||||||| |||||||||| |||||    
T  16243202 tttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaactaaagaa 16243265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 28008942 - 28008844
Alignment:
Q  111 atgacatcttgtcattacgtaatt-ttttatgtaaatttatgata-tttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||||||||||||||| |||||||||| || || | | |||||||||||||||  | ||||  ||| ||||||||  |||||||||||||||    
T  28008942 atgacatcttgtcattacgtaatttttttatgtaatttgatcacattttggagttcacaaggcaacttatgcagcaagaaaag-cagaaaaactgaagaa 28008844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 54736814 - 54736751
Alignment:
Q  146 tttatgata-tttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||| ||| |||||||||||||||||||| ||  |||||||| || |||||||||||||    
T  54736814 tttatgatacttttgagttcacaagcaagcttaagcaacaagaaaagcaaaaaaaactgaagaa 54736751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 29344735 - 29344673
Alignment:
Q  147 ttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||  ||||||||||||||| |||| ||| |||||||| |||||||| |||||||    
T  29344735 ttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaattgaagaa 29344673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 15196198 - 15196137
Alignment:
Q  109 taatgacatcttgtcattacgtaattttttatgtaaatttatgata-tttggagttcacaag 169  Q
    ||||||||||| |||||||||||||||| ||||||| || || | | |||||||||||||||    
T  15196198 taatgacatctcgtcattacgtaattttctatgtaatttgatcacattttggagttcacaag 15196137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 10107574 - 10107542
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  10107574 atgatattttgagttcacaagcaagcttaaaca 10107542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 17532629 - 17532597
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  17532629 atgatattttgagttcacaagcaagcttaaaca 17532597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 30220914 - 30220878
Alignment:
Q  108 ctaatgacatcttgtcattacgtaattttttatgtaa 144  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  30220914 ctaatgacatctcgtcattacgtaatttttaatgtaa 30220878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 52198345 - 52198377
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  52198345 atgatattttgagttcacaagcaagcttaaaca 52198377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 53815007 - 53815071
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa-ctgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||  |||||||| ||||||||    
T  53815007 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaagctgaagaa 53815071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 38898 - 38801
Alignment:
Q  111 atgacatcttgtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||| |||||||| ||||||||  |||||| | ||| |||||||||||||||||||||||||||||  || ||||||| ||||||||||||||    
T  38898 atgacatctcgtcattacataatttttattgtaaaatcatggtatttggagttcacaagcaagcttaaacaacaaaaaaagaaggaaaaactgaagaa 38801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 28930145 - 28930083
Alignment:
Q  201 ctgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  28930145 ctgaagaattgtcaagactttgggaagaccaagaatgaatattcaagaggcctcagaagactt 28930083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 29144513 - 29144443
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||  |||| ||||||    
T  29144513 aagaacaactgaagaattgtcaagactttgggaagacaaagaatgaagattcaagaggcatcaggagactt 29144443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 22378046 - 22378114
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagac 260  Q
    ||||| |||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||| ||||    
T  22378046 aagaacaactgaagaattgtcaagaccttgggaagacaaagaatgaagattcaagaggcctcaggagac 22378114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 21905605 - 21905535
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||| |||| ||||||||||||||| |||||||||| ||||||||| |||||||||| ||||| ||||||    
T  21905605 aagaacaactaaagaattgtcaagacattgggaagacaaagaatgaagattcaagaggcctcaggagactt 21905535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 27907751 - 27907810
Alignment:
Q  204 aagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||| ||||| ||||||    
T  27907751 aagaattgtcaagactttgggaagaccaaggatgaagattcaagaggcctcaggagactt 27907810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 18758170 - 18758110
Alignment:
Q  203 gaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||| |||| ||||||||||||||| |||||||||| |||||||||| ||||| ||||||    
T  18758170 gaagacttgtgaagactttgggaagaacaagaatgaagattcaagaggcctcaggagactt 18758110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 27540491 - 27540539
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagag 248  Q
    |||||||||||||||||||||||||||| ||||||| || |||||||||    
T  27540491 ctgaagaattgtcaagactttgggaagaccaagaataaagattcaagag 27540539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 15466210 - 15466242
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  15466210 atgatattttgagttcacaagcaagcttaaaca 15466242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 18120803 - 18120839
Alignment:
Q  230 aagaatgaatattcaagaggtctcagaagacttacaa 266  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  18120803 aagaatgaagattcaagaggcctcagaagacttacaa 18120839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 4450549 - 4450488
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagacaagaatgaatattcaagaggtctca 254  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  4450549 aagaacaactgaagaattgtcaagactttgggaagacaaaaatgaagattcaagaggcctca 4450488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 18563434 - 18563346
Alignment:
Q  122 tcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaagaaa--gaaaaactgaagaa 208  Q
    ||||||| |||||||||||||||||| ||| ||| || ||||||||||||||||||| ||| ||||||| |||   |||||||||||||    
T  18563434 tcattacataattttttatgtaaattcatggtatctgcagttcacaagcaagcttaagcagcaagaaaaaaaatgaaaaaactgaagaa 18563346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 11804578 - 11804508
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||| |||||| ||| || |||||||||    
T  11804578 aagaacaactgaagaattttcaagactttgggaagacaaagaatgaagattcaaaaggacttagaagactt 11804508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 9273998 - 9273935
Alignment:
Q  146 tttatgatattt-ggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||| ||||||||||||||||||||| ||  ||||||||||||||||  |||||||    
T  9273998 tttatgatattttggagttcacaagcaagcttaagcaccaagaaaagaaagaaaagttgaagaa 9273935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 9865606 - 9865543
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  ||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  9865606 tttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaactgaagaa 9865543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 3585757 - 3585811
Alignment:
Q  209 ttgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    |||| |||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  3585757 ttgtgaagactttgggaagaataagaatgaagattcaagaggtctcagaagactt 3585811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 25692660 - 25692598
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||||| || |||||||||||| ||| |||||| |||||||||| ||||||||||||    
T  25692660 ctgaagaattgtgaatactttgggaagatcaaaaatgaagattcaagaggcctcagaagactt 25692598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 9080426 - 9080475
Alignment:
Q  159 gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||||||||||| ||| |||||||  ||||||||||||||||    
T  9080426 gagttcacaagcaagcttaagcagcaagaaaaccaagaaaaactgaagaa 9080475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 6046406 - 6046319
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagacttacaacagggaagaattat 280  Q
    ||||| |||| ||||||||| ||||||| |||||||| ||| ||||| ||| |||||| ||||| ||||||| || |||||||||||||    
T  6046406 aagaacaactaaagaattgtgaagactt-gggaagaccaaggatgaagattaaagaggcctcaggagacttataagagggaagaattat 6046319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 17730009 - 17730064
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||    
T  17730009 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 17730064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 20081604 - 20081549
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||    
T  20081604 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 20081549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 23298191 - 23298144
Alignment:
Q  233 aatgaatattcaagaggtctcagaagacttacaacagggaagaattat 280  Q
    |||||| |||||||||| |||||||||||||||| ||||| |||||||    
T  23298191 aatgaagattcaagaggcctcagaagacttacaatagggaggaattat 23298144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 8052655 - 8052709
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctca 254  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||| ||| ||||    
T  8052655 ctgaagaattgtcaagactttgggaagaccaaaaatgaagattcaacaggcctca 8052709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 39270501 - 39270559
Alignment:
Q  205 agaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||| ||| | ||||||    
T  39270501 agaattgtcaagactttgagaagaccaagaatgaagattcaagaggcctcgggagactt 39270559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 8317690 - 8317730
Alignment:
Q  226 agacaagaatgaatattcaagaggtctcagaagacttacaa 266  Q
    |||||||||| || |||||||||| ||||||||||||||||    
T  8317690 agacaagaataaagattcaagaggcctcagaagacttacaa 8317730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 10611581 - 10611529
Alignment:
Q  204 aagaattgtcaa-gactttgggaagac-aagaatgaatattcaagaggtctca 254  Q
    |||||||||||| |||||||||||||| |||||| || |||||||||||||||    
T  10611581 aagaattgtcaaagactttgggaagactaagaataaagattcaagaggtctca 10611529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 13287959 - 13287999
Alignment:
Q  226 agacaagaatgaatattcaagaggtctcagaagacttacaa 266  Q
    |||||||||| || |||||||||| ||||||||||||||||    
T  13287959 agacaagaataaagattcaagaggcctcagaagacttacaa 13287999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 18986970 - 18986998
Alignment:
Q  201 ctgaagaattgtcaagactttgggaagac 229  Q
    |||||||||||||||||||||||||||||    
T  18986970 ctgaagaattgtcaagactttgggaagac 18986998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 19001598 - 19001626
Alignment:
Q  201 ctgaagaattgtcaagactttgggaagac 229  Q
    |||||||||||||||||||||||||||||    
T  19001598 ctgaagaattgtcaagactttgggaagac 19001626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 20175966 - 20175906
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagac 260  Q
    ||||| |||||| ||||||||||||||| || ||||||| |||||||||| ||| ||||||    
T  20175966 ctgaaaaattgtgaagactttgggaagatcatgaatgaagattcaagaggcctcggaagac 20175906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 26249303 - 26249363
Alignment:
Q  203 gaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||| |||| ||||||||||||||| |||||||||| ||||||||||  |||| ||||||    
T  26249303 gaagatttgtgaagactttgggaagaccaagaatgaagattcaagaggcttcaggagactt 26249363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 26556550 - 26556582
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  26556550 atgatattttgagttcacaagcaagcttaaaca 26556582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 45288102 - 45288038
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa-ctgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||  |||||||| ||||||||    
T  45288102 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaagctgaagaa 45288038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 45291438 - 45291374
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa-ctgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||  |||||||| ||||||||    
T  45291438 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaagctgaagaa 45291374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 15176657 - 15176719
Alignment:
Q  201 ctgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||    
T  15176657 ctgaagaattgtcaagactttgggaagacaaagaatgaagattcaagaggcctcaggagactt 15176719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 23868055 - 23868117
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||| ||||||||||||||||| |||||||||| |||||||||| ||||| ||||||    
T  23868055 ctgaagaattatcaagactttgggaagaccaagaatgaagattcaagagggctcaggagactt 23868117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 24389627 - 24389556
Alignment:
Q  201 ctgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagacttacaacaggga 272  Q
    |||||||||||| ||||||| || ||||| ||||||||| |||||||||| ||||| ||||||||||||||||    
T  24389627 ctgaagaattgtgaagacttagg-aagaccaagaatgaagattcaagaggcctcaggagacttacaacaggga 24389556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 12582254 - 12582317
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  ||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  12582254 tttatgatatttttgagttcacaagcaagattaagcagaaagaaaagcaagaaaaactgaagaa 12582317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 28858708 - 28858649
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaaga 259  Q
    ||||||| | || ||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  28858708 ctgaagattagtgaagactttgggaagatcaagaatgaatattcaagaggcctcaaaaga 28858649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 2559800 - 2559898
Alignment:
Q  111 atgacatcttgtcattacgtaattttttatgtaaatttatgata-tttggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||||||||| ||||||| ||||||| || || | | |||||| ||||||||  | ||||  ||| |||||||| || |||||||||||||    
T  2559800 atgacatcttgtcattacataattttatatgtaatttgatcacattttggatttcacaaggcaacttatgcagcaagaaaagcaaaaaaaactgaagaa 2559898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 13313473 - 13313535
Alignment:
Q  201 ctgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||||| || | ||||||||||| |||||||||||||||||||  |||| |||||||    
T  13313473 ctgaagaattgtgaatattttgggaagaccaagaatgaatattcaagagacctcaaaagactt 13313535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 24091131 - 24091181
Alignment:
Q  230 aagaatgaatattcaagaggtctcagaagacttacaacagggaagaattat 280  Q
    ||||||||| |||||||||| ||||||||||||||||  |||| |||||||    
T  24091131 aagaatgaagattcaagaggcctcagaagacttacaaatgggatgaattat 24091181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 2837639 - 2837576
Alignment:
Q  146 tttatgatattt-ggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||| ||||||||||||||||||||| ||| || ||||| ||||||||||||||||    
T  2837639 tttatgatattttggagttcacaagcaagcttaagcagcaataaaagcaagaaaaactgaagaa 2837576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 24658517 - 24658579
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctca 254  Q
    ||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||    
T  24658517 aagaacaactgaagaattgtcaagactttaggaagacaaagaatgaagattcaagaggcctca 24658579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 32837119 - 32837174
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||||||||||||    
T  32837119 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagaaagaaaaa 32837174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 28666371 - 28666301
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||| |||||||||||| ||||||| |||||||||| ||||||||| |||||||||| ||| | ||||||    
T  28666371 aagaacaactgaagaattatcaagacattgggaagacaaagaatgaacattcaagaggcctcgggagactt 28666301  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 24320749 - 24320798
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagagg 249  Q
    |||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  24320749 ctgacgaattgtcaagactttgggaagaccaagaatgaagattcaagagg 24320798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 19052943 - 19052895
Alignment:
Q  230 aagaatgaatattcaagaggtctcagaagacttacaacagggaagaatt 278  Q
    ||||||||| |||||||||| ||||| |||||||||||||||| |||||    
T  19052943 aagaatgaagattcaagaggcctcaggagacttacaacagggaggaatt 19052895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 18031746 - 18031809
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  ||||||| ||||||| |||| ||| |||||||| ||||||||||||||||    
T  18031746 tttatgatattttcgagttcaaaagcaagtttaagcagcaagaaaagcaagaaaaactgaagaa 18031809  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 21828004 - 21827941
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    ||||||||||||  |||||| ||||||||||||| ||| |||||||| ||||||||| ||||||    
T  21828004 tttatgatatttttgagttcgcaagcaagcttaagcagcaagaaaagcaagaaaaaccgaagaa 21827941  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 22938019 - 22937964
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||    
T  22938019 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 22937964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 26908288 - 26908229
Alignment:
Q  111 atgacatcttgtcattacgtaattttttatgtaaatttatgat-atttggagttcacaag 169  Q
    ||||||||| |||||||||||||||||||||||  || || || ||||||||||||||||    
T  26908288 atgacatctagtcattacgtaattttttatgtattttgatcataatttggagttcacaag 26908229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 37214802 - 37214857
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||    
T  37214802 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 37214857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 23338812 - 23338750
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||||| ||| ||||||||||| |||||||||| |||||||||  ||||| ||||||    
T  23338812 ctgaagaattgtgaaggctttgggaagaccaagaatgaagattcaagagtcctcaggagactt 23338750  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 25400954 - 25401016
Alignment:
Q  193 aagaaaaactgaagaattgtcaagactttgggaagac-aagaatgaatattcaagaggtctca 254  Q
    ||||| ||| ||||| |||| ||||||||||||| || ||||||||| |||||||||||||||    
T  25400954 aagaacaaccgaagatttgtgaagactttgggaataccaagaatgaagattcaagaggtctca 25401016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 21336691 - 21336642
Alignment:
Q  159 gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||||||||||| ||  |||||||| ||||||||| ||||||    
T  21336691 gagttcacaagcaagcttaagcaacaagaaaagcaagaaaaaccgaagaa 21336642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 23215081 - 23215118
Alignment:
Q  229 caagaatgaatattcaagaggtctcagaagacttacaa 266  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  23215081 caagaatgaatattcaagaggcctcataagacttacaa 23215118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 40916836 - 40916787
Alignment:
Q  159 gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||||||||||| ||  |||||||| ||||||||| ||||||    
T  40916836 gagttcacaagcaagcttaagcaacaagaaaagcaagaaaaaccgaagaa 40916787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 42061526 - 42061559
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaacag 182  Q
    ||||||||| ||||||||||||||||||||||||    
T  42061526 atgatattttgagttcacaagcaagcttaaacag 42061559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 23387779 - 23387835
Alignment:
Q  208 attgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactta 263  Q
    |||||||||||||||||||||| |||| |||| |||||||||| ||||  |||||||    
T  23387779 attgtcaagactttgggaagacaaagagtgaagattcaagaggcctcaatagactta 23387835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 39191367 - 39191431
Alignment:
Q  146 tttatgata-tttggagttcacaagcaagcttaaacagtaagaaaagaaag-aaaaactgaagaa 208  Q
    ||||||||| ||| |||||||||||||||||||| ||| |||||||  ||| |||||||||||||    
T  39191367 tttatgatacttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaaactgaagaa 39191431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 34733251 - 34733186
Alignment:
Q  121 gtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaag 186  Q
    |||||||| | ||||||  |||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  34733251 gtcattacattatttttattgtaaatttatgatcttttgagttcacaagcaagattaaacagtaag 34733186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 15542534 - 15542588
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctca 254  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||    
T  15542534 ctgaagaattgtcaagactttcggaagaccaagaatgaagattcaagaggcctca 15542588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 14782400 - 14782339
Alignment:
Q  202 tgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    |||||||||||||| |||||||||||| |||||||||| |||||| ||| ||||| ||||||    
T  14782400 tgaagaattgtcaaaactttgggaagaccaagaatgaagattcaaaaggcctcaggagactt 14782339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 7634897 - 7634968
Alignment:
Q  119 ttgtcattacgtaattttttatgtaaatttatgatatttggagttcacaagcaagcttaaacagtaagaaaa 190  Q
    |||||||||| ||||||||  ||||||   ||||||||| ||||||||||| |||||||||||  |||||||    
T  7634897 ttgtcattacataatttttagtgtaaaggcatgatattttgagttcacaagtaagcttaaacaacaagaaaa 7634968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 9403203 - 9403149
Alignment:
Q  209 ttgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactt 262  Q
    |||| |||||||||||||||| |||||| || |||||||||||||||| ||||||    
T  9403203 ttgtgaagactttgggaagaccaagaattaagattcaagaggtctcaggagactt 9403149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 2793339 - 2793375
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaacagtaa 185  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  2793339 atgatattttgagttcacaagcaagtttaaacagtaa 2793375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 95495 - 95433
Alignment:
Q  201 ctgaagaattgtcaagactttgggaaga-caagaatgaatattcaagaggtctcagaagactt 262  Q
    ||||||||||||||||||||| |||||| |||  ||||| |||||||||||||||| ||||||    
T  95495 ctgaagaattgtcaagacttttggaagaccaattatgaagattcaagaggtctcaggagactt 95433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 6299 - 6247
Alignment:
Q  228 acaagaatgaatattcaagaggtctcagaagacttacaacagggaagaattat 280  Q
    |||||||| || |||||||||| ||||||||||||||||| |||| |||||||    
T  6299 acaagaataaagattcaagaggcctcagaagacttacaactgggaggaattat 6247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 1024 - 960
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaag-aaaaactgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||| |||||||||||||    
T  1024 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaaactgaagaa 960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 4384 - 4329
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||    
T  4384 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 4329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 11514 - 11459
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||    
T  11514 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 11459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 1081 - 1144
Alignment:
Q  146 tttatgatattt-ggagttcacaagcaagcttaaacagtaagaaaagaaagaaaaactgaagaa 208  Q
    |||||||||||| |||||||| ||| |||||||| ||  |||||||| ||||||||||||||||    
T  1081 tttatgatattttggagttcataaggaagcttaagcaccaagaaaagcaagaaaaactgaagaa 1144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 246314 - 246259
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaagaaaaa 200  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||| ||||||||    
T  246314 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 246259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 4599 - 4663
Alignment:
Q  146 tttatgatatttg-gagttcacaagcaagcttaaacagtaagaaaagaaag-aaaaactgaagaa 208  Q
    ||||||||||||  |||||||||||||||||||| ||| |||||||  ||| |||||||||||||    
T  4599 tttatgatatttttgagttcacaagcaagcttaagcagcaagaaaatcaagaaaaaactgaagaa 4663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 61637 - 61669
Alignment:
Q  149 atgatatttggagttcacaagcaagcttaaaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  61637 atgatattttgagttcacaagcaagcttaaaca 61669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 4689 - 4633
Alignment:
Q  208 attgtcaagactttgggaagac-aagaatgaatattcaagaggtctcagaagactta 263  Q
    |||||||||||||||||||||| |||| |||| |||||||||| ||||  |||||||    
T  4689 attgtcaagactttgggaagacaaagagtgaagattcaagaggcctcaatagactta 4633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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