View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1110_high_18 (Length: 259)

Name: NF1110_high_18
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1110_high_18
NF1110_high_18
[»] chr5 (3 HSPs)
chr5 (30-259)||(15040301-15040530)
chr5 (30-259)||(15042804-15043033)
chr5 (30-259)||(15037804-15038033)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 15040530 - 15040301
Alignment:
Q  30 gtagacttttcaacgattttaattaatctagtttctttctcatttgttgtttagaattgttggaatctacatcttttgtgaagcttgttgctgtctatga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15040530 gtagacttttcaacgattttaattaatctagtttctttctcatttgttgtttagaattgttggaatctacatcttttgtgaagcttgttgctgtctatga 15040431  T
Q  130 gtaacgatcaagttgaaggctatggcaaatgcacttgttataactattgaattgtatcgnnnnnnnncttctttcccttgtaacctatatcaatttttaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||     
T  15040430 gtaacgatcaagttgaaggctatggcaaatgcacttgttataactattgaattgtatcgttttttttcttctttcccttgtaacctatatcaatttttag 15040331  T
Q  230 tttttgtacatatttaaacatccttgtact 259  Q
    ||||||||||||||||||||||||||||||    
T  15040330 tttttgtacatatttaaacatccttgtact 15040301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 15043033 - 15042804
Alignment:
Q  30 gtagacttttcaacgattttaattaatctagtttctttctcatttgttgtttagaattgttggaatctacatcttttgtgaagcttgttgctgtctatga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15043033 gtagacttttcaacgattttaattaatctagtttctttctcatttgttgtttagaattgttggaatctacatcttttgtgaagcttgttgctgtctatga 15042934  T
Q  130 gtaacgatcaagttgaaggctatggcaaatgcacttgttataactattgaattgtatcgnnnnnnnncttctttcccttgtaacctatatcaatttttaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||     
T  15042933 gtaacgatcaagttgaaggctatggcaaatgcacttgttataactattgaattgtatcgttttttttcttctttcccttgtaacctatatcaatttttag 15042834  T
Q  230 tttttgtacatatttaaacatccttgtact 259  Q
    ||||||||||||||||||||||||||||||    
T  15042833 tttttgtacatatttaaacatccttgtact 15042804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 15038033 - 15037804
Alignment:
Q  30 gtagacttttcaacgattttaattaatctagtttctttctcatttgttgtttagaattgttggaatctacatcttttgtgaagcttgttgctgtctatga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15038033 gtagacttttcaacgattttaattaatctagtttctttctcatttgttgtttagaattgttggaatctacatcttttgtgaagcttgttgctgtctatga 15037934  T
Q  130 gtaacgatcaagttgaaggctatggcaaatgcacttgttataactattgaattgtatcgnnnnnnnncttctttcccttgtaacctatatcaatttttaa 229  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||     
T  15037933 gtaacgatcaagttgaaggctttggcaaatgcacttgttataactattgaattgtatcgttttttttcttctttcccttgtaacctatatcaatttttag 15037834  T
Q  230 tttttgtacatatttaaacatccttgtact 259  Q
    ||||||||||||||||||||||||||||||    
T  15037833 tttttgtacatatttaaacatccttgtact 15037804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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