View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_high_20 (Length: 251)
Name: NF1110_high_20
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_high_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 57 - 251
Target Start/End: Complemental strand, 48017828 - 48017634
Alignment:
| Q |
57 |
acaatcgcttgttgagtatattaatgacatttgtctttccttttagtcaaaatgcaggactgttgggtctaacacgcgttgggagtcgtagagtcattca |
156 |
Q |
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| T |
48017828 |
acaatcgcttgttgagtatattaatgacatttgtctttccttttagtcaaaatgcaggactgttgggtctaacacgtgttgggagtcgtagagtcattca |
48017729 |
T |
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| Q |
157 |
aatgtcagctggattcatgcttttcttctctatatttggtattacatttcattcccttctgtgaatttctgagcattctaatgtattattactga |
251 |
Q |
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| T |
48017728 |
aatgtcagctggattcatgcttttcttctctatatttggtattacatttcattcccttctgtgaatttctgagcattctaatgtattattactga |
48017634 |
T |
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