View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_high_22 (Length: 251)
Name: NF1110_high_22
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11074871 - 11074630
Alignment:
| Q |
1 |
gaattcaaaggctgaagattcaagaaaggtgtttatttcttgattgaaatttaaacattgtttccaatcacaaccttaaaacacgatttaacccatcaac |
100 |
Q |
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| T |
11074871 |
gaattcaaaggctgaagattcaagaaaggtgtttatttcttgattgaaatttaaacattgtttccaatcacaaccttaaaacacgatttaacccatcaac |
11074772 |
T |
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| Q |
101 |
tctggggttatttgaattttaaaccaaccttctagctcaaacccaaaccaaaccaagacnnnnnnntaacaccaatgtgaacatgaaatgacttttacaa |
200 |
Q |
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| T |
11074771 |
tctagggttatttggattttaaaccaaccttctagctcaaacccaaaccaaaccaagacaaacaaataacacaaatgtgaacatgaaatgaattttacaa |
11074672 |
T |
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| Q |
201 |
aattagatttgtaatcaagagagaacccttagatagaattat |
242 |
Q |
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| T |
11074671 |
aattagatttgtaatcaagagagaacccttagatggaattat |
11074630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 11055581 - 11055349
Alignment:
| Q |
1 |
gaattcaaaggctgaagattcaagaaaggtgtttatttcttgattgaaatttaaacattgtttccaatcacaaccttaaaacacgatttaacccatcaac |
100 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |
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| T |
11055581 |
gaattcaaaggctgaaaatccaagaaaggtgtttatttcttgattaaaatttaaacattgtttccaatcacaacctcaaaacacgacttaaccca-caac |
11055483 |
T |
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| Q |
101 |
tctggggttatttgaattttaaaccaaccttctagctcaaacccaaaccaaaccaagacnnnnnnntaacaccaatgtgaacatgaaatgacttttacaa |
200 |
Q |
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||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11055482 |
tctagggttatttggattttgaaccaaccttctagctcaaacccaaaccaaaccaagacaaacaaataacaccaatgtgaacatgaaatgacttttacaa |
11055383 |
T |
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| Q |
201 |
aattagatttgtaatcaagagagaacccttagat |
234 |
Q |
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||||| ||||| |||||||||||||||||||||| |
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| T |
11055382 |
aattaaatttggaatcaagagagaacccttagat |
11055349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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