View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_low_12 (Length: 384)
Name: NF1110_low_12
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 26262557 - 26262659
Alignment:
| Q |
8 |
cgaataatatactactagagattccagattcgtgttgtagaaaagagaataatgtttcaaacaaataatatgagg-taataatagcagggttttttgtac |
106 |
Q |
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| T |
26262557 |
cgaacaatatactacttgagattccagattcgtgttgtagaaaagagaataatgtttcaaacaaataatatgaggttaataatagcaggggtttttgtac |
26262656 |
T |
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| Q |
107 |
cag |
109 |
Q |
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||| |
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| T |
26262657 |
cag |
26262659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 26262724 - 26262804
Alignment:
| Q |
172 |
cgatctagcaaatttcattttcatattttaccaacgcaaagaagaaaatgacgattatggagaacaatagtacatttcttc |
252 |
Q |
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| T |
26262724 |
cgatctagcaaatttcattttcatattttaccaacgcaaagaagaaaatgacaattatggagaataatagtacatttcttc |
26262804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 26262811 - 26262850
Alignment:
| Q |
240 |
agtacatttcttctttgcgttgataaaatatgttgcaacc |
279 |
Q |
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| T |
26262811 |
agtacatttcttctttgccttggtaaaatatgttgcaacc |
26262850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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