View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1110_low_16 (Length: 329)
Name: NF1110_low_16
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 48017609 - 48017286
Alignment:
| Q |
1 |
tttgtatgaaacaatttgttcattcctatggattggttggaatatctgaataagtgaaacagaatgaaacaaaataaaatgaccacaacattgttctcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48017609 |
tttgtatgaaacaatttgttcattcctatggattggttggaatatctgaataagtgaaacagaatgaaacaaaataaaatgaccacaacattgttctcac |
48017510 |
T |
|
| Q |
101 |
atttatgatatagtgaatgagagtattcaagtgattaaaacttaaactagcttgtcttttcatgtgtgcctaatttcttactgtatccgggtttataaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48017509 |
atttatgatatagtgaatgagagtattcaagtgattaaaacttaaactagcttgtcttttcatgtgtgcctaatttcttactgtatccgggtttataaat |
48017410 |
T |
|
| Q |
201 |
caggtaaatttggagcagtgattgctgcaataccattgccaatagtagcagccgtgtattgtgttctctttgcctatgtcggtatgtatgatttattcgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48017409 |
caggtaaatttggagcagtgattgctgcaataccattgccaatagtagcagccgtgtattgtgttctctttgcctatgtcggtatgtatgatttattcgt |
48017310 |
T |
|
| Q |
301 |
tatcaattataatttcatatcact |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
48017309 |
tatcaattataatttcatatcact |
48017286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University