View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_low_18 (Length: 322)
Name: NF1110_low_18
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_18 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 43395895 - 43396187
Alignment:
| Q |
30 |
attatatggtgtcttttactactaaatcattgtctgatc-ttcaatttttgagacctttgtatggagcaatgacaatcccaactacacgtgttgttgaat |
128 |
Q |
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| T |
43395895 |
attatatggtgtcttttactactaaatcattgtctgatcgttcaatttttgagacctttgtatggagcaatgacaatcccaactacacgtgttgttgaat |
43395994 |
T |
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| Q |
129 |
aggtaaggattcctgatctttcaatgaagctttataatatgaatgttctctggcatgttggggagacattaggtaatatgttgaagtagaccacttgact |
228 |
Q |
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| T |
43395995 |
aggtaaggattcttgatctttcaatgaagctttataatatgaatgttctctggcatgttggggagacattaggtaatatgttgaagtagaccacttgact |
43396094 |
T |
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| Q |
229 |
tctagtcaatctcgtgatcgactggctcgtatttgtgtgaaaatagatcttgaaaagaaactcattccaaagttcactatgagtgatttaagt |
321 |
Q |
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| T |
43396095 |
tctagtcaatctcgtgatcgactggctcgtatttgtgtgaaaatagatattgacaagaaactcattccaaaattcactatgagtgatttaagt |
43396187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 40775151 - 40775280
Alignment:
| Q |
176 |
ctctggcatgttggggagacattaggtaatatgttgaag-tagaccacttgacttctagtcaatctcgtgatcgactggctcgtatttgtgtgaaaatag |
274 |
Q |
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| T |
40775151 |
ctctggcgtgttagagggacattacgtaatatgctgaacatggaccacttgacatctagtcaatttcgtggtcgatttgcacgtatttgtgtgaaaaggg |
40775250 |
T |
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| Q |
275 |
atcttgaaaagaaactcattccaaagttca |
304 |
Q |
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| T |
40775251 |
atcttgataagaaaatcattttaaagttca |
40775280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 39046413 - 39046353
Alignment:
| Q |
185 |
gttggggagacattaggtaatatgttgaa-gtagaccacttgacttctagtcaatctcgtg |
244 |
Q |
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| T |
39046413 |
gttggggagtcattaggtaacatgttcaatgtggaccacttgacttctaatcaatctcgtg |
39046353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 31022880 - 31023015
Alignment:
| Q |
79 |
gagacctttgtatggagcaatgacaatcccaactacacgtgttgttgaataggtaaggattcctgatctttcaatgaagctttataatatgaatgttctc |
178 |
Q |
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| T |
31022880 |
gagacctttgtatgaagcaacgacaatctcaactacacgtgttgatgtatggataaggattcctcatcttccaatggagctttgtaacatgaattttctt |
31022979 |
T |
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| Q |
179 |
tggcatgttggggagacattaggtaatatgttgaag |
214 |
Q |
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| T |
31022980 |
tagtgtgttggaaagacattaggtaatatgttgaag |
31023015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 2138 - 2025
Alignment:
| Q |
176 |
ctctggcatgttggggagacattaggtaatatgttgaag-tagaccacttgacttctagtcaatctcgtgatcgactggctcgtatttgtgtgaaaatag |
274 |
Q |
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| T |
2138 |
ctctggcgtgttagagggacattacgtaatatgctgaacatggaccacttgacatctagtcaatttcgtggtcgatttgcacgtatttgtgtgaaaaggg |
2039 |
T |
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| Q |
275 |
atcttgaaaagaaa |
288 |
Q |
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| T |
2038 |
atcttgataagaaa |
2025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 8333522 - 8333602
Alignment:
| Q |
133 |
aaggattcctgatctttcaatgaagctttataatatgaatgttctctggcatgttggggagacattaggtaatatgttgaa |
213 |
Q |
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|||||||||| ||||| |||||||||||||||||| |||| |||| |||| | || ||||| ||||| ||| ||||||||| |
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| T |
8333522 |
aaggattcctaatcttccaatgaagctttataataggaattttctttggcgttttagggaggcattatgtagtatgttgaa |
8333602 |
T |
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