View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_low_2 (Length: 703)
Name: NF1110_low_2
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 31 - 698
Target Start/End: Complemental strand, 3527633 - 3526963
Alignment:
| Q |
31 |
ttttcacgtaggaaaagtggaacaaaattaaggtctcgttgtctcattaattataacaaaatgaatagtggcaaaatgtgtacacgggtgatgctgattt |
130 |
Q |
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| T |
3527633 |
ttttcacgtaggaaaagtggaacaaaattaaggtctcgttgtctcattaattataacaaaatgaataatggcaaaatgtgtacacgggtgatgctgattt |
3527534 |
T |
|
| Q |
131 |
gggtgttaatggtagtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattgacta |
230 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527533 |
gggtgttaatggtagtaattagcatgagtgtaattagcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattgacta |
3527434 |
T |
|
| Q |
231 |
cgttaactctacacaaccaccagacatttgctgcaatccaattaaagatctatatgcaacccacaaaacatgtttctgtcaacttatcgcagcttatggc |
330 |
Q |
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| T |
3527433 |
cattaactctacacaaccaccagacatttgctgcaatccaattaaagatctatatgcaacccacaaaacatgtttctgtcaacttatcgcagcttatggc |
3527334 |
T |
|
| Q |
331 |
ttatttgaagcttttggtttgaaaattactcaggttttccaagttatatacttatgtggtatcaacttcaataccagctcctgcataggtatgtgaaatg |
430 |
Q |
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| T |
3527333 |
ttatttgaagcttttggtttgaaaattactcaggttttccaagttatatacttatgtggtatcaacttcaataccagctcctgcataggtatgtgaaatg |
3527234 |
T |
|
| Q |
431 |
aaaacatatttaatacttcttccgtcctaaatcgactgacccattgaagaagnnnnnnnntttgatttttagagg-atattacttttttattttccaatt |
529 |
Q |
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| T |
3527233 |
aaaacatatttaatacttcttccgtcctaaatcgactgacccattgaagaa--aaaaaaaattgatttttagaggaatattacttttttattttccaatt |
3527136 |
T |
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| Q |
530 |
ctaccata----taagtacactactttcatcaattcaatttataataataatgagattacatcaatccatgcatttatatcctgatatttcgtaattgga |
625 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |
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| T |
3527135 |
ctaccatataattaagtacactactttcatcaattcaatttataataataatgagattacatcaatacatgcatttatatcctgatatttccttattgga |
3527036 |
T |
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| Q |
626 |
aattttcagcttcttctccaactcttcccctgtcgtcattgcagcccccaggtaaaatcctcttcatctcact |
698 |
Q |
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| T |
3527035 |
aattttcagcttcttctccaactcttcccctgtcgtcattgcagcccccaggtaaaatcctcttcatttcact |
3526963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 143 - 278
Target Start/End: Complemental strand, 3537114 - 3536979
Alignment:
| Q |
143 |
tagtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattgactacgttaactctac |
242 |
Q |
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||||||||| ||| | |||||| ||| |||||||||||||| |||||||||||||||||| | | | | || ||||||| |||||| | || || || |
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| T |
3537114 |
tagtaattaacataaatgtaattagcatagtagatgcacaaatgcttccaccttgtgctggtgataagatgttgccatgcacagactacctcaattccac |
3537015 |
T |
|
| Q |
243 |
acaaccaccagacatttgctgcaatccaattaaaga |
278 |
Q |
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| T |
3537014 |
tcatccaccagacatttgctgcaatccaattaaaga |
3536979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 3532016 - 3531963
Alignment:
| Q |
39 |
taggaaaagtggaacaaaattaaggtctcgttgtctcattaattataacaaaatg |
93 |
Q |
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| T |
3532016 |
taggaaaagtggaacaaaattaaggtc-cgtagtctcatgaattacaacaaaatg |
3531963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 3531929 - 3531880
Alignment:
| Q |
145 |
gtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccacc |
194 |
Q |
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| T |
3531929 |
gtaattagcatgagtgtgattagcatattagatgcacaagttcttccacc |
3531880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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