View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1110_low_26 (Length: 268)

Name: NF1110_low_26
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1110_low_26
NF1110_low_26
[»] chr8 (5 HSPs)
chr8 (1-256)||(8700648-8700903)
chr8 (34-124)||(14382630-14382720)
chr8 (66-147)||(8693634-8693715)
chr8 (107-198)||(32056260-32056351)
chr8 (107-224)||(35495155-35495275)
[»] chr5 (3 HSPs)
chr5 (108-222)||(34250423-34250540)
chr5 (135-178)||(10161749-10161793)
chr5 (131-178)||(25548437-25548485)
[»] chr3 (3 HSPs)
chr3 (107-198)||(1441479-1441571)
chr3 (101-175)||(3845233-3845308)
chr3 (107-175)||(7262793-7262862)
[»] chr1 (3 HSPs)
chr1 (157-233)||(37522971-37523050)
chr1 (163-230)||(1003774-1003843)
chr1 (132-179)||(36529425-36529473)
[»] chr6 (4 HSPs)
chr6 (146-223)||(1485217-1485298)
chr6 (133-200)||(1499787-1499855)
chr6 (132-175)||(5724751-5724795)
chr6 (131-198)||(33136581-33136649)
[»] chr4 (1 HSPs)
chr4 (134-223)||(47596366-47596459)
[»] chr2 (1 HSPs)
chr2 (136-219)||(37420272-37420358)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 8700648 - 8700903
Alignment:
Q  1 cccaagtgaacactaactgaccaacaaaagtggattatattaaattgttaatttaaacttaacggatcatctaaactaatccaaattaattttattcatt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8700648 cccaagtgaacactaactgaccaaccaaagtggattatattaaattgttaatttaaacttaacggatcatctaaactaatccaaattaattttattcatt 8700747  T
Q  101 ttggtttatgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattgatttgacatgtttgatttctctagagttgaattgattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  8700748 ttggtttatgtttggtttcactattgatgtagccaaaattaattttaaatgtgtagaattgatttgacatgtttggtttctctagagttgaattgattgt 8700847  T
Q  201 ctttagaattgattctacttgaagttagaagtttactttttaccatgaaatatatt 256  Q
    || ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  8700848 ctctagaattgattctacttgaagttagaagtttacttattatcatgaaatatatt 8700903  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 14382720 - 14382630
Alignment:
Q  34 attatattaaattgttaatttaaacttaacggatcatctaaactaatccaaattaattttattcattttggtttatgtttggtttcactat 124  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||||||| ||||||||| ||||||    
T  14382720 attaaattaaattgttaatttaaacttaaccgatcatctaaactaatccaaattaattacaatcattttggtttgtgtttggttccactat 14382630  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 8693634 - 8693715
Alignment:
Q  66 atcatctaaactaatccaaattaattttattcattttggtttatgtttggtttcactattgatgtagccaaaattaatttta 147  Q
    |||||||||||||||||| || ||||||||||||||||||  ||||||||||||| | ||||   |||||||||| ||||||    
T  8693634 atcatctaaactaatccagataaattttattcattttggtgcatgtttggtttcatttttgaatgagccaaaatttatttta 8693715  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 32056260 - 32056351
Alignment:
Q  107 tatgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattgatttgacatgtttgatttctctagagttgaattgatt 198  Q
    |||||||||||||||| |||| | | |||||||| ||| |||||||||||||  ||||||||| ||||| || ||||| |||  ||||||||    
T  32056260 tatgtttggtttcacttttgaaggaaccaaaattgattctagatgtgtagaacagatttgacaagtttggttgctctatagtaaaattgatt 32056351  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 35495155 - 35495275
Alignment:
Q  107 tatgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattgattt-gacatgtttgatttctctagagttgaattgattat--ctt 203  Q
    ||||||||||| |||| |||  | | |||||||| ||| || | ||||||||||||||| |||||||||  |||||||| | | ||||| ||| |  ||     
T  35495155 tatgtttggttccacttttggagcacccaaaattgattctacaagtgtagaattgattttgacatgttttgtttctctaaattagaattaattttgcctc 35495254  T
Q  204 tagaattgattctacttgaag 224  Q
    |||||||||||||||||||||    
T  35495255 tagaattgattctacttgaag 35495275  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 34250540 - 34250423
Alignment:
Q  108 atgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattgattt-gacatgtttgatttctctagagttgaattgattat--cttt 204  Q
    |||||||||| |||| |||| | ||  | |||| ||| |||||||||||||||| ||| |||||||||| |||||||||||| |||||||||||  || |    
T  34250540 atgtttggttccacttttgaaggagttataattgattctagatgtgtagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctct 34250441  T
Q  205 agaattgattctacttga 222  Q
    ||||||||||||||||||    
T  34250440 agaattgattctacttga 34250423  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 10161749 - 10161793
Alignment:
Q  135 aaaattaattttagatgtgtagaattgat-ttgacatgtttgatt 178  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||    
T  10161749 aaaattgattctagatgtgtagaattgatcttgacatgtttgatt 10161793  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 25548437 - 25548485
Alignment:
Q  131 agccaaaattaattttagatgtgtagaattgatt-tgacatgtttgatt 178  Q
    |||||||||| ||| | ||||||||||||||||| ||||||||||||||    
T  25548437 agccaaaattgattgtggatgtgtagaattgattatgacatgtttgatt 25548485  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 1441571 - 1441479
Alignment:
Q  107 tatgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattga-tttgacatgtttgatttctctagagttgaattgatt 198  Q
    ||||||||||| |||| |||  ||| ||||||||| || |||| |||||||||||| ||||||||||||| ||||| | |||| |||||||||    
T  1441571 tatgtttggttccacttttggagtaaccaaaattatttctagaggtgtagaattgagtttgacatgtttggtttcttttgagtagaattgatt 1441479  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 3845308 - 3845233
Alignment:
Q  101 ttggtttatgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattga-tttgacatgtttg 175  Q
    ||||| ||||||||||| |||| |||  ||| |||||||| ||| |||| |||||||||||| |||||||||||||    
T  3845308 ttggtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttg 3845233  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 7262793 - 7262862
Alignment:
Q  107 tatgtttggtttcactatt-gatgtagccaaaattaattttagatgtgtagaattgatt-tgacatgtttg 175  Q
    ||||||||||||||||||| ||||  ||||||||| |||||||| ||| |||||||||| |||||||||||    
T  7262793 tatgtttggtttcactattagatg-ggccaaaattgattttagaggtgaagaattgattctgacatgtttg 7262862  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 37523050 - 37522971
Alignment:
Q  157 aattgatt-tgacatgtttgatttctctagagttgaattgattat--ctttagaattgattctacttgaagttagaagtt 233  Q
    |||||||| |||||||||||||| |||| |||| ||||||||| |  || | ||||||||||||||||||| ||||||||    
T  37523050 aattgattatgacatgtttgattgctctggagtagaattgattttttctctcgaattgattctacttgaagctagaagtt 37522971  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 1003774 - 1003843
Alignment:
Q  163 tttgacatgtttgatttctctagagttgaattgattat--ctttagaattgattctacttgaagttagaa 230  Q
    ||||||||||||| || |||||||||  |||||||| |  ||| ||||||||||||| ||||||||||||    
T  1003774 tttgacatgtttggttcctctagagtataattgattgtgtcttaagaattgattctaattgaagttagaa 1003843  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 36529425 - 36529473
Alignment:
Q  132 gccaaaattaattttagatgtgtagaattga-tttgacatgtttgattt 179  Q
    ||||||||||||||||||  ||||||||| | |||||||||||||||||    
T  36529425 gccaaaattaattttagaaatgtagaattaattttgacatgtttgattt 36529473  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 1485298 - 1485217
Alignment:
Q  146 tagatgtgtagaattgatt--tgacatgtttgatttctctagagttgaattgattat--ctttagaattgattctacttgaa 223  Q
    |||| ||||||||||||||  ||||||||||| || |||| |||| ||||| ||| |  |||||||||||||||||||||||    
T  1485298 tagaggtgtagaattgattcttgacatgtttgtttgctcttgagtagaattaattttgcctttagaattgattctacttgaa 1485217  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 1499787 - 1499855
Alignment:
Q  133 ccaaaattaattttagatgtgtagaattgatt-tgacatgtttgatttctctagagttgaattgattat 200  Q
    |||||||||||| |  | |||||||||||||| || ||||||||||| || |||||| |||||||||||    
T  1499787 ccaaaattaattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattat 1499855  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 5724795 - 5724751
Alignment:
Q  132 gccaaaattaattttagatgtgtagaattgatt-tgacatgtttg 175  Q
    ||||||||||||| |||| |||||||||||||| |||||||||||    
T  5724795 gccaaaattaattctagaagtgtagaattgattctgacatgtttg 5724751  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 33136649 - 33136581
Alignment:
Q  131 agccaaaattaattttagatgtgtagaattga-tttgacatgtttgatttctctagagttgaattgatt 198  Q
    |||||||||||||| |||| ||||| |||||| ||||||||||||| || |||| ||||  ||||||||    
T  33136649 agccaaaattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgatt 33136581  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 47596459 - 47596366
Alignment:
Q  134 caaaattaattttagatgtgtagaattgatt--tgacatgtttgatttctctagagttgaattga--ttatctttagaattgattctacttgaa 223  Q
    ||||||| |||||| | ||| ||||||||||  ||||||||||||||||||||||||  |||| |  |||| | |||| |||||||||||||||    
T  47596459 caaaattgattttaaaggtggagaattgattgttgacatgtttgatttctctagagtataattaattttatttatagagttgattctacttgaa 47596366  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 37420358 - 37420272
Alignment:
Q  136 aaattaattttagatgtgtagaattgattt-gacatgtttgatttctctagagttgaattgattat--ctttagaattgattctact 219  Q
    ||||| ||| |||| ||||||||||||||| ||||||||||  ||| ||||||| ||||||||| |  || ||||||||||||||||    
T  37420358 aaattgattctagaggtgtagaattgattttgacatgtttggcttccctagagtagaattgattttgcctctagaattgattctact 37420272  T

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