View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_low_28 (Length: 260)
Name: NF1110_low_28
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_28 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 8700225 - 8700454
Alignment:
| Q |
30 |
tcagaagctctctcaatggcaattatgcatgcacaaaactcagcttcaagagcagaagcaaagcctatattttgagaaaagacaccaagaaagagagaag |
129 |
Q |
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| T |
8700225 |
tcagaagctctctcaatggcaatcatgcatgcacaaaactcagcttcaagagcagaagcaaagcccatattttgagaaaaggcaccaagaaagagagaag |
8700324 |
T |
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| Q |
130 |
cactcctgtaaacaatcccaatagagccacaaggatgagacccaacaaaggaaccatcacaattaatcttaacacaacccaaagggggacgcatccagtg |
229 |
Q |
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| T |
8700325 |
cactcctgtaaacaatcccaatagagccacaaggatgagacccaacagaggaaccatcacaattaatcttaacacaacccaaaggggg-cgcatccagtg |
8700423 |
T |
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| Q |
230 |
aacatcctgaacaggtacaactctgcctaat |
260 |
Q |
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| T |
8700424 |
aacatcctgaacatgtacaactctgcctaat |
8700454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 52773891 - 52774121
Alignment:
| Q |
30 |
tcagaagctctctcaatggcaattatgcatgcacaaaactcagcttcaagagcagaagcaaagcctatattttgagaaaagacaccaagaaagagagaag |
129 |
Q |
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| T |
52773891 |
tcagaagctttctcaatggcagtcatgcatgcacaaaactcagcttcaagagcagtagcaaagcctatattttgagaaaaaccaccaagaaagagagaag |
52773990 |
T |
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| Q |
130 |
cactcctgtaaacaatcccaatagagccacaaggatgagacccaacaaaggaaccatcacaattaatcttaacacaacccaaagggggacgcatccagtg |
229 |
Q |
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| T |
52773991 |
cactcctgtaaacaatcccaatagagccacaaggatgagacccaacataggaaccatcacagttaatcttaacacaacccaaagggggacgcatccagtg |
52774090 |
T |
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| Q |
230 |
aacatcctgaacaggtacaactctgcctaat |
260 |
Q |
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| T |
52774091 |
aacatcctgaacaggtacaactctgcctaat |
52774121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 26566100 - 26566050
Alignment:
| Q |
54 |
atgcatgcacaaaactcagcttcaagagcagaagcaaagcctatattttga |
104 |
Q |
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| T |
26566100 |
atgcatgcacaaaattcagcctcaagagaagaagcatagcctatgttttga |
26566050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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