View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_low_3 (Length: 614)
Name: NF1110_low_3
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4607911 - 4607632
Alignment:
| Q |
1 |
gagttttcttctagttcaaaaaactcattgagtatagtttcatttcaaaaacccatttgagtatattttcttcacatttgagtatagtttcaaaccaaaa |
100 |
Q |
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| T |
4607911 |
gagttttcttctagttcaaaaaactcattgagtatagtttcatttcaaaaacccatttgagtatattttcttcacatttgagtatagtttcaaaccaaaa |
4607812 |
T |
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| Q |
101 |
taagactatgagttaagttctgcaaccaaataataataacaccactgaacatatagtacactgcatattttgctgtgaaattgtactatacattaaaagt |
200 |
Q |
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| T |
4607811 |
taagactatgagttaagttctgcaaccaaataataataacaccactgaacatatagtacactgcatattttgctgtgaaattgtactatacattaaaagt |
4607712 |
T |
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| Q |
201 |
cttataccaactcaaaaatagttactttatataagcttctttgtccccactaataatccaaaatagggtcattgataatg |
280 |
Q |
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| T |
4607711 |
cttataccaactcaaaaatagttactttatataagcttctttgtccccactaataatccaaaatagggtcattgataatg |
4607632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 379 - 606
Target Start/End: Complemental strand, 4607533 - 4607306
Alignment:
| Q |
379 |
tgatagtaaaatctgtaacagaaaagtggcttttgaaatagtctcagatgagaaataaacggaggagcaggaacagtcaatgagattttagcataactga |
478 |
Q |
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| T |
4607533 |
tgatagtaaaatctgtaacagaaaagtggcttttgaaatagtctcagatgagaaataaacggaggagcaggaacagtcaatgagattttagcataactga |
4607434 |
T |
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| Q |
479 |
tgatagcattaaattctattcttaggtgaacttctagtagtggatatctttggaatactccaaatttggttggttttgttgccactcaatgctaattaat |
578 |
Q |
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| T |
4607433 |
tgatagcattaaattctattcttaggtgaacttctagtagtggatatctttggaatactccaaatttggttggttttgttgccactcaatgctaattaat |
4607334 |
T |
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| Q |
579 |
actaccatgtgatactcctatattgttg |
606 |
Q |
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| T |
4607333 |
actaccatgtgatactcctatattgttg |
4607306 |
T |
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