View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1110_low_31 (Length: 257)

Name: NF1110_low_31
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1110_low_31
NF1110_low_31
[»] chr1 (38 HSPs)
chr1 (18-210)||(21790785-21790979)
chr1 (18-210)||(29858957-29859145)
chr1 (88-210)||(14886187-14886309)
chr1 (86-210)||(47052379-47052503)
chr1 (80-210)||(16960018-16960147)
chr1 (88-210)||(26897033-26897155)
chr1 (86-210)||(14886726-14886850)
chr1 (76-210)||(46284789-46284923)
chr1 (48-206)||(6690339-6690499)
chr1 (86-210)||(48302089-48302213)
chr1 (50-210)||(16959538-16959699)
chr1 (80-210)||(44233242-44233372)
chr1 (82-210)||(6690984-6691111)
chr1 (102-206)||(26896507-26896611)
chr1 (84-210)||(2271229-2271355)
chr1 (86-210)||(27651998-27652121)
chr1 (77-210)||(46285434-46285567)
chr1 (86-210)||(27651367-27651490)
chr1 (76-210)||(39848764-39848898)
chr1 (86-210)||(21791380-21791502)
chr1 (76-193)||(44234550-44234667)
chr1 (89-198)||(48301913-48302022)
chr1 (86-193)||(29859561-29859668)
chr1 (76-206)||(47374083-47374213)
chr1 (84-210)||(42986791-42986917)
chr1 (76-210)||(47374730-47374864)
chr1 (90-210)||(10716706-10716826)
chr1 (76-210)||(7011999-7012132)
chr1 (76-210)||(7012922-7013056)
chr1 (76-210)||(39847842-39847976)
chr1 (86-210)||(5216596-5216718)
chr1 (89-210)||(42986982-42987103)
chr1 (76-210)||(5496580-5496714)
chr1 (102-209)||(10716838-10716945)
chr1 (76-210)||(26212953-26213087)
chr1 (76-142)||(5497205-5497271)
chr1 (130-206)||(51445507-51445583)
chr1 (76-134)||(51446962-51447020)
[»] chr8 (20 HSPs)
chr8 (18-210)||(36731911-36732105)
chr8 (80-210)||(39861542-39861672)
chr8 (49-210)||(5882269-5882432)
chr8 (76-210)||(25128621-25128755)
chr8 (86-210)||(17450561-17450684)
chr8 (76-193)||(25191396-25191513)
chr8 (49-176)||(25129224-25129353)
chr8 (77-176)||(5881201-5881300)
chr8 (76-210)||(29361849-29361983)
chr8 (86-211)||(36731374-36731497)
chr8 (76-210)||(29266197-29266331)
chr8 (81-177)||(37437963-37438059)
chr8 (86-199)||(39861007-39861119)
chr8 (84-210)||(5332068-5332194)
chr8 (76-210)||(29267744-29267878)
chr8 (84-210)||(5330929-5331055)
chr8 (155-210)||(39130994-39131049)
chr8 (93-210)||(42986681-42986798)
chr8 (95-207)||(42987383-42987495)
chr8 (18-53)||(39861509-39861544)
[»] chr6 (11 HSPs)
chr6 (49-210)||(19653722-19653885)
chr6 (88-210)||(8992942-8993064)
chr6 (88-210)||(9017389-9017511)
chr6 (86-210)||(8993481-8993605)
chr6 (86-210)||(9017928-9018052)
chr6 (86-210)||(18649796-18649919)
chr6 (86-211)||(32907461-32907584)
chr6 (125-210)||(9280828-9280913)
chr6 (135-210)||(19651106-19651181)
chr6 (80-210)||(18153293-18153421)
chr6 (76-177)||(18154351-18154451)
[»] chr7 (30 HSPs)
chr7 (80-210)||(43334618-43334747)
chr7 (86-210)||(3474937-3475061)
chr7 (80-210)||(30469992-30470121)
chr7 (86-210)||(26774029-26774153)
chr7 (80-210)||(3163389-3163518)
chr7 (88-210)||(3475469-3475591)
chr7 (52-210)||(3162904-3163063)
chr7 (80-210)||(46428010-46428139)
chr7 (50-210)||(30469547-30469708)
chr7 (88-210)||(26774573-26774691)
chr7 (50-208)||(43334167-43334330)
chr7 (76-210)||(8487695-8487829)
chr7 (86-210)||(30659890-30660013)
chr7 (86-210)||(37422594-37422717)
chr7 (96-210)||(38816721-38816835)
chr7 (76-210)||(8513350-8513484)
chr7 (77-207)||(21866271-21866401)
chr7 (86-210)||(30660406-30660529)
chr7 (76-210)||(8487064-8487198)
chr7 (76-210)||(8512739-8512873)
chr7 (50-207)||(46427531-46427693)
chr7 (76-210)||(25245548-25245682)
chr7 (76-210)||(31178675-31178808)
chr7 (76-210)||(38059882-38060016)
chr7 (76-206)||(28451163-28451293)
chr7 (84-210)||(21865601-21865727)
chr7 (76-210)||(31179808-31179939)
chr7 (82-207)||(26076786-26076911)
chr7 (82-207)||(26100573-26100698)
chr7 (103-210)||(43742755-43742862)
[»] chr4 (18 HSPs)
chr4 (23-191)||(42883295-42883470)
chr4 (80-210)||(21825039-21825168)
chr4 (76-210)||(42882783-42882917)
chr4 (50-210)||(21824592-21824753)
chr4 (76-210)||(45920174-45920308)
chr4 (76-210)||(45919546-45919680)
chr4 (76-211)||(46618384-46618519)
chr4 (76-210)||(4158498-4158632)
chr4 (76-210)||(46619514-46619648)
chr4 (84-210)||(42058521-42058645)
chr4 (84-210)||(41696015-41696141)
chr4 (84-177)||(29212062-29212155)
chr4 (55-138)||(24534111-24534196)
chr4 (76-210)||(41695419-41695553)
chr4 (76-177)||(24377837-24377937)
chr4 (76-116)||(4157900-4157940)
chr4 (76-135)||(52363111-52363170)
chr4 (147-207)||(4157817-4157877)
[»] chr3 (24 HSPs)
chr3 (76-210)||(51827597-51827731)
chr3 (86-210)||(41710093-41710217)
chr3 (88-210)||(41709554-41709676)
chr3 (48-210)||(28908507-28908671)
chr3 (48-210)||(30834288-30834452)
chr3 (48-210)||(51829342-51829506)
chr3 (86-210)||(53948695-53948818)
chr3 (125-210)||(43400704-43400789)
chr3 (86-210)||(53949211-53949334)
chr3 (76-210)||(28907921-28908054)
chr3 (101-210)||(53948485-53948593)
chr3 (76-210)||(53949373-53949507)
chr3 (76-210)||(47169044-47169178)
chr3 (86-210)||(38798287-38798410)
chr3 (76-210)||(47167922-47168056)
chr3 (76-168)||(30833747-30833838)
chr3 (80-210)||(11238551-11238679)
chr3 (84-210)||(53949972-53950098)
chr3 (76-210)||(20202090-20202222)
chr3 (105-210)||(20200524-20200629)
chr3 (105-210)||(20202708-20202813)
chr3 (76-116)||(20199998-20200038)
chr3 (86-181)||(38798788-38798874)
chr3 (89-210)||(24485855-24485976)
[»] chr5 (9 HSPs)
chr5 (76-210)||(42519675-42519809)
chr5 (49-210)||(42520289-42520452)
chr5 (76-210)||(42521578-42521712)
chr5 (84-210)||(23206089-23206215)
chr5 (76-210)||(42520652-42520786)
chr5 (76-210)||(21147984-21148118)
chr5 (84-210)||(21145971-21146097)
chr5 (89-160)||(31218780-31218851)
chr5 (84-210)||(31219884-31220010)
[»] scaffold0155 (2 HSPs)
scaffold0155 (76-206)||(1668-1798)
scaffold0155 (51-210)||(1033-1191)
[»] chr2 (22 HSPs)
chr2 (76-210)||(121339-121473)
chr2 (80-210)||(19386330-19386459)
chr2 (50-210)||(19386778-19386939)
chr2 (77-210)||(122842-122975)
chr2 (86-210)||(20202685-20202808)
chr2 (77-210)||(4776282-4776415)
chr2 (49-199)||(38956050-38956201)
chr2 (86-210)||(8911734-8911857)
chr2 (86-209)||(8911202-8911323)
chr2 (76-210)||(39629401-39629535)
chr2 (86-210)||(20203197-20203320)
chr2 (76-210)||(42848752-42848886)
chr2 (76-210)||(42849385-42849519)
chr2 (76-177)||(39628805-39628906)
chr2 (76-167)||(4776896-4776987)
chr2 (80-199)||(44929019-44929138)
chr2 (76-206)||(2477242-2477372)
chr2 (84-206)||(2477851-2477973)
chr2 (76-210)||(13327779-13327913)
chr2 (76-210)||(13328698-13328832)
chr2 (76-210)||(38273586-38273720)
chr2 (93-210)||(44926676-44926794)
[»] scaffold0188 (1 HSPs)
scaffold0188 (76-210)||(25649-25783)
[»] scaffold0009 (2 HSPs)
scaffold0009 (76-210)||(105545-105679)
scaffold0009 (76-210)||(106176-106310)
[»] scaffold0301 (1 HSPs)
scaffold0301 (76-210)||(20765-20897)
[»] scaffold0853 (2 HSPs)
scaffold0853 (76-177)||(2211-2312)
scaffold0853 (76-210)||(650-779)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 21790979 - 21790785
Alignment:
Q  18 atagtgggagaaatcaaatggcaatcattagtgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaa 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  21790979 atagtgggagaaatcaaatggcaatcattggtgcaaaatataacgaaaatggtaagtaattaaccaagagaagaaagaattaattatttctaaaattaaa 21790880  T
Q  116 atttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21790879 atttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 21790785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 29859145 - 29858957
Alignment:
Q  18 atagtgggagaaatcaaatggcaatcattagtgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaa 115  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  29859145 atagtgggagaaatcaaatggcaatcattggtgcaaaatatagcgaaaatggtaagtaattaactaagagaagaaagaataaattatttctaaaattaaa 29859046  T
Q  116 atttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||| ||||||||||      ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29859045 atttgactcatttgat------tgtgagaatttaatgaattgatgcgagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 29858957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 14886309 - 14886187
Alignment:
Q  88 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 187  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  14886309 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaagcatgtgagcatttaatgaattgatgagagacgtcagattaaagttggattaa 14886210  T
Q  188 tggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||    
T  14886209 tggttatgatttggtgtcaaatt 14886187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 47052503 - 47052379
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||    
T  47052503 aagaaagaataaattgtttttaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgagagacgttggattaaagttgaatt 47052404  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  47052403 aatggttatgatttggtgtcaaatt 47052379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 16960018 - 16960147
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    ||||||||||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  16960018 caagagaagaaagaa-aaattgtttctaaaattaaaatttggataatttgatcaagcatgtgagcatttaatgaattgatgatagacgttggattaaagt 16960116  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    || ||||||||||||||||||||||||||||    
T  16960117 tgaattaatggttatgatttggtgtcaaatt 16960147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 26897033 - 26897155
Alignment:
Q  88 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 187  Q
    ||||||||||||| |||||||||||||||||| | | |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  26897033 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaagcatatgagtatttaatgaattgatgagagacgtcagattaaagttggattaa 26897132  T
Q  188 tggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||    
T  26897133 tggttatgatttggtgtcaaatt 26897155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 14886726 - 14886850
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||| |||    
T  14886726 aagaaagaataaattgtttctaaaattaaaatttagatcatttgctcaagcatgtgaacatttaatgaattgatgagagacgttggattaaagttgaatt 14886825  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  14886826 aatggttatgatttggtgtcaaatt 14886850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 46284923 - 46284789
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||| || ||||||||||||| ||||||||||  |||||    
T  46284923 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagcatgtaagcatttaatgaattgttgagagacgtcggatta 46284824  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||| |||||| |||||||||    
T  46284823 aagttggattaatggttaggatttgatgtcaaatt 46284789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 6690499 - 6690339
Alignment:
Q  48 gtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaa 145  Q
    |||||||||||||| |||| || || |||  |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  6690499 gtgcaaaatataacaaaaacgggaactatccaaccaagaaaagaaataataaattatttctaaaattaaaatttggatcatttgatcaagcatgtgagca 6690400  T
Q  146 tttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtca 206  Q
    |||||| ||||||||||  ||||  ||||||||||||||||||||||| |||||| |||||    
T  6690399 tttaataaattgatgagcaacgtcggattaaagttggattaatggttaggatttgatgtca 6690339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 48302089 - 48302213
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||| | | | |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  48302089 aagaaagaataaattgtttctaaaattaaaatgtagataatttgatcaaacatgtgagcatttaatgaattgatgagagacgtgagattaaagttggatt 48302188  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||| ||||||||||||||    
T  48302189 aatggttatggtttggtgtcaaatt 48302213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 16959699 - 16959538
Alignment:
Q  50 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatt 147  Q
    ||||||||||| ||||| ||||||||  ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| |||| |||||||| |||    
T  16959699 gcaaaatataatgaaaacggtaagtaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaaacatgtgagcatt 16959600  T
Q  148 taatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  16959599 taatgatttgatgagagacgtcagattaaag-tggattaatggttaggatttagtgtcaaatt 16959538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 44233372 - 44233242
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    |||||||| ||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  44233372 caagagaataaataataaattatttttaaaattaaaatttggatcatttgatcaagcatgtgagcatttaataaattgatgagagacgtcagattaaagt 44233273  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    ||||||||| ||||  ||||| |||||||||    
T  44233272 tggattaattgttagaatttgatgtcaaatt 44233242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 210
Target Start/End: Original strand, 6690984 - 6691111
Alignment:
Q  82 agagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttg 181  Q
    |||||||||||||||  ||||||||||| ||||||||||  |||||||||||| |||||||| ||||||||||||| |||||||| |  |||||||||||    
T  6690984 agagaagaaagaatattttatttctaaa-ttaaaatttgaatcatttgatcaaacatgtgagtatttaatgaattgttgagagacatcggattaaagttg 6691082  T
Q  182 gattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||||||    
T  6691083 gattaatggttatgatttggtgtcaaatt 6691111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 26896611 - 26896507
Alignment:
Q  102 tttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttgg 201  Q
    |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  26896611 tttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgagagacgttggattaaagttgaattaatagttatgatttgg 26896512  T
Q  202 tgtca 206  Q
    |||||    
T  26896511 tgtca 26896507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 2271229 - 2271355
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    ||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||  || ||||||||||||||| |||||  |||||||||||||    
T  2271229 agaagaaagaatacattatttctaaaattaaatttttgatcatttgatcaagcatgtgaacatctaatgaattgatgagggacgtcggattaaagttgga 2271328  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    |||||||||| ||||| ||||||||||    
T  2271329 ttaatggttaggatttagtgtcaaatt 2271355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 27651998 - 27652121
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||| ||||| |||||||||||||||||| | | ||||||| ||||||||||| ||||||||||||||||||| ||||  ||||||||||| |||    
T  27651998 aagaaagaacaaattgtttctaaaattaaaatttagataatttgat-aagcatgtgagcatttaatgaattgatgagaaacgtcggattaaagttgaatt 27652096  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  27652097 aatggttatgatttggtgtcaaatt 27652121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 46285434 - 46285567
Alignment:
Q  77 aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa 176  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||||||   ||||   ||| |    
T  46285434 aacccagaaaagaaagaataaattatttctaaaattaaaatttggataatttgatcaagcatttgagcatttaatgaattgatgatcaacgtcgaattta 46285533  T
Q  177 agttggattaatggttatgatttggtgtcaaatt 210  Q
     |||||||||||||||| ||||||||||||||||    
T  46285534 cgttggattaatggttaggatttggtgtcaaatt 46285567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 27651490 - 27651367
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||| ||||||| ||||||||||||||||||||||||  ||||||||||| |||    
T  27651490 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagtatgtgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 27651392  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||| ||||||||||    
T  27651391 aatggttatgatttagtgtcaaatt 27651367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 39848764 - 39848898
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||||||| ||||||||||    
T  39848764 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagccgttagatta 39848863  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  || |||||||| || ||||||||||||||||    
T  39848864 aaactgtattaatggctaggatttggtgtcaaatt 39848898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 21791380 - 21791502
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||  ||||||||||  |||||||||||||| | |||||||  |||||| |||| |||    
T  21791380 aagaaagaataaattatttctaaaattaaattttggattatttga--aagcatgtgaacatttaatgaattgacgggagacgtcggattaaggttgaatt 21791477  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||| ||||||||||||||||    
T  21791478 aatggttaagatttggtgtcaaatt 21791502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 44234550 - 44234667
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||||||||||| ||| |||||||||||||||||||||||||| || |||||||||||| |||||||  ||||||| |||| |||| | |||| | ||||    
T  44234550 taaccaagagaaaaaataataaattatttctaaaattaaaattcggatcatttgatcaaacatgtgatcatttaataaatttatgaaaaacgtcatatta 44234649  T
Q  176 aagttggattaatggtta 193  Q
    ||||||||||||||||||    
T  44234650 aagttggattaatggtta 44234667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 48302022 - 48301913
Alignment:
Q  89 aaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaat 188  Q
    ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||  ||||||    
T  48302022 aaagaataaattgattctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaacgaattgatgagagacatcagattaaagtttaattaat 48301923  T
Q  189 ggttatgatt 198  Q
    | ||||||||    
T  48301922 gattatgatt 48301913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 29859561 - 29859668
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| |  |||||||| || ||     
T  29859561 aagaaagaataaattatttttaaaattaaaatttgtctcatttgatcatgcatgtgagcatttaatgaattgatgggagacatcggattaaagatgaatg 29859660  T
Q  186 aatggtta 193  Q
    ||||||||    
T  29859661 aatggtta 29859668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 47374213 - 47374083
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||||||||||  || ||||||||||    
T  47374213 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatggaagccgttagatta 47374114  T
Q  176 aagttggattaatggttatgatttggtgtca 206  Q
    ||  || |||||||| ||  |||||||||||    
T  47374113 aaactgtattaatggctagaatttggtgtca 47374083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 42986917 - 42986791
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    ||||||||||||||||||||| |||||||||||  ||| |||||||||||| |||||||| | |||||||||| ||||||| | ||||||||||   | |    
T  42986917 agaagaaagaataaattatttttaaaattaaaaggtggatcatttgatcaaacatgtgagcacttaatgaattaatgagagccattagattaaatgagta 42986818  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    ||||||  || ||||||||||||||||    
T  42986817 ttaatgactaagatttggtgtcaaatt 42986791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 47374730 - 47374864
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||| ||||| |||||  ||  ||| ||||||||||||||||| | |||||||||| || |||| ||||||||||    
T  47374730 taaccaaaagaagaaagaataaattatttataaaaataaaagatgtgtcacttgatcaagcatgtgagcacttaatgaattaataagagccgttagatta 47374829  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||||||||    
T  47374830 aaacagtattaatggctaggatttggtgtcaaatt 47374864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 10716826 - 10716706
Alignment:
Q  90 aagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatg 189  Q
    ||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| ||| |||||||||||| | | |||||||    
T  10716826 aagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaatcgtattaatg 10716727  T
Q  190 gttatgatttggtgtcaaatt 210  Q
     |||  ||||||||| |||||    
T  10716726 attagaatttggtgttaaatt 10716706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 7012132 - 7011999
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||| ||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||    
T  7012132 taaccaaaagaagaa-gaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagatta 7012034  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||||||||    
T  7012033 aacccgaattaatggctaggatttggtgtcaaatt 7011999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 7012922 - 7013056
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | | ||||| || ||  ||| ||||||||||    
T  7012922 taaccaaaagaagaaagaataaattatttctaaaaataaaaagtgggtcacttgatcaagcatgtgagcactcaatgagtttatcggagccgttagatta 7013021  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||||||||    
T  7013022 aaaccgtattaatggctaggatttggtgtcaaatt 7013056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 39847976 - 39847842
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||| ||||| |||||  ||| ||| ||||||||||||||||  | ||||||| || ||||||| ||||||||||    
T  39847976 taaccaaaagaagaaagaataaattatttttaaaaataaaaggtgggtcacttgatcaagcatgtgaacacttaatgagtttatgagagccgttagatta 39847877  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||  || ||||||||||||||||    
T  39847876 aaaccgtattaatgactaggatttggtgtcaaatt 39847842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 5216718 - 5216596
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    |||||| ||||||||||||||||||||||| ||||  | ||||||  ||||||||||  |||||||||||||| | |||||||  |||||| |||| |||    
T  5216718 aagaaataataaattatttctaaaattaaattttgaattatttga--aagcatgtgaacatttaatgaattgacgggagacgtcggattaaggttgaatt 5216621  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||| |||||||| |||||||    
T  5216620 aatggttaagatttggtatcaaatt 5216596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 42986982 - 42987103
Alignment:
Q  89 aaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaat 188  Q
    ||||||||||||||||||||||||||||  ||| ||| ||||||||||||||||  | |||||||||||||| ||  | ||||||||||  |  ||||||    
T  42986982 aaagaataaattatttctaaaattaaaaggtgggtcacttgatcaagcatgtgaacacttaatgaattgatgtgaacctttagattaaaactatattaat 42987081  T
Q  189 ggttatgatttggtgtcaaatt 210  Q
    ||||| |||||| |||||||||    
T  42987082 ggttaggatttgatgtcaaatt 42987103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 5496714 - 5496580
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||  ||| || |||| ||||||||| | |||||||||||||| ||| ||||| ||||    
T  5496714 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgagtcacttaatcaggcatgtgagcacttaatgaattgatgggagccgttatatta 5496615  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| ||  |||||||||||||||    
T  5496614 aaaccgtattaatggctagaatttggtgtcaaatt 5496580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 10716838 - 10716945
Alignment:
Q  102 tttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttgg 201  Q
    ||||||||| |||||| ||| ||| ||||||||||||||||| | |||||||||||||| |||  |||||||||||   | |||||||| || |||||||    
T  10716838 tttctaaaaataaaatatgggtcacttgatcaagcatgtgagcacttaatgaattgatgcgagctgttagattaaaaaggtattaatggctaggatttgg 10716937  T
Q  202 tgtcaaat 209  Q
    ||||||||    
T  10716938 tgtcaaat 10716945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 26213087 - 26212953
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||| |||||||||||||||| ||| |||||||||||||||  |||||||||| |||||  ||||||| | |||   ||||||| |||| |||| |||||    
T  26213087 taactaagagaagaaagaatagattgtttctaaaattaaaaggtggctcatttaatcaaatatgtgagcacttataaaattgattagagccgttggatta 26212988  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  |  |||||||| || ||||||||||||||||    
T  26212987 aaactatattaatggataagatttggtgtcaaatt 26212953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 5497205 - 5497271
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtga 142  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||  ||| |||||||| |||||||    
T  5497205 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgagtcacttgatcaaacatgtga 5497271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 51445583 - 51445507
Alignment:
Q  130 atcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtca 206  Q
    |||||||||||||| | |||| |||||||| | || |||||||||||| ||  |||||||| || ||||||||||||    
T  51445583 atcaagcatgtgagcacttaacgaattgattaaagccgttagattaaaattatattaatggataagatttggtgtca 51445507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 51447020 - 51446962
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaa 134  Q
    |||| |||||||||||||||| ||| |||||||||||||||  || ||||||| |||||    
T  51447020 taactaagagaagaaagaatagattgtttctaaaattaaaaggtgactcatttaatcaa 51446962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 36731911 - 36732105
Alignment:
Q  18 atagtgggagaaatcaaatggcaatcattagtgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaa 115  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  36731911 atagtgggagaaatcaaatggcaatgattggtgcaaaatataacaaaaatggtaagtaattaaccaagagaagaaagaataaattatttctaaaattaaa 36732010  T
Q  116 atttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36732011 atttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 36732105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 39861542 - 39861672
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39861542 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcacgtgagaatttaatgaattgatgagagacgttagattaaagt 39861641  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||| |||||| ||| |||||    
T  39861642 tggattaatggttaggatttgatgttaaatt 39861672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 5882269 - 5882432
Alignment:
Q  49 tgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaat 146  Q
    ||||||||||||| |||| || || |||  |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||    
T  5882269 tgcaaaatataacaaaaacgggaactattcaaccaagaaaagaaagaataaattatttttaaaattaaaatttggatcatttgatcaagcatgtgagcat 5882368  T
Q  147 ttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||||||||||||||  |||   |||||| |||||||||||||||| ||||| ||||||||||    
T  5882369 ttaatgaattgatgagcaacggcggattaatgttggattaatggttaggattttgtgtcaaatt 5882432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 25128755 - 25128621
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  |||| |||||||| || |||  ||||||||||||||||||||||||  |||||    
T  25128755 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatatgatcaagtatttgaatatttaatgaattgatgagagacgtcggatta 25128656  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||| |||||||||||||||||||||||||||||    
T  25128655 aagtttgattaatggttatgatttggtgtcaaatt 25128621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 17450684 - 17450561
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| |||    
T  17450684 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgtgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 17450586  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  17450585 aatggttatgatttggtgtcaaatt 17450561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 25191396 - 25191513
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||  ||||| |||||||||||| |||||  |||||    
T  25191396 taactaagagaagaaagaataaattatttctaaaattaaaatttgaatcagttgatcaagcatgtgaacatttactgaattgatgagggacgtcggatta 25191495  T
Q  176 aagttggattaatggtta 193  Q
    ||||||||||||||||||    
T  25191496 aagttggattaatggtta 25191513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 25129224 - 25129353
Alignment:
Q  49 tgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaat 146  Q
    ||||||||||||| ||||||| || ||   |||||||| |||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||    
T  25129224 tgcaaaatataacaaaaatggaaactaatcaaccaagaaaagaaataataaattatttctaaaattaaaatttggatcatttcatcaaacatgtgagcat 25129323  T
Q  147 ttaatgaattgatgagagacgttagattaa 176  Q
    ||||||||||||||||||||||| ||||||    
T  25129324 ttaatgaattgatgagagacgttggattaa 25129353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 5881300 - 5881201
Alignment:
Q  77 aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa 176  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  5881300 aaccaagaaaagaaagaatacattatttctaaaattaaagtttggatcatttcatcaagcatgtgagcatttaatgaattgatgagagacgttggattaa 5881201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 29361983 - 29361849
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| |||||||||||||| || | |||||||||||||| ||| ||||||||||    
T  29361983 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgttagcacttaatgaattgatgggagccgttagatta 29361884  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||| ||||||||||||    
T  29361883 aaaccgtattaatggctaggatctggtgtcaaatt 29361849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 36731497 - 36731374
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||||||| |||||||||| ||||| | ||||||  |||||| |||  |||||||||||||||| |||||||  |||||| |||| |||    
T  36731497 aagaaagaataaattatttttaaaattaaattttggattatttga--aagcatatgaacatttaatgaattgatgggagacgtcggattaaggttgaatt 36731400  T
Q  186 aatggttatgatttggtgtcaaatta 211  Q
    |||||||| |||||||||||||||||    
T  36731399 aatggttaagatttggtgtcaaatta 36731374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 29266331 - 29266197
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| |||||||||||||||||| |  | ||||||| || ||| ||| ||||||||||    
T  29266331 taaccaaaagaagaaagaataaattatttctaaaaataaaaagtgggtcatttgatcaagcatgtaaatacttaatgagtttatgggagccgttagatta 29266232  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    || | | |||||| |||| |||||| |||||||||    
T  29266231 aaatcgtattaatagttaggatttgatgtcaaatt 29266197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 37438059 - 37437963
Alignment:
Q  81 aagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaa 177  Q
    ||||||| ||||||||||||||||||||||||||||  ||| | ||||||||||  ||||||| || ||||||||||||| ||| ||||||||||||    
T  37438059 aagagaaaaaagaataaattatttctaaaattaaaagatggataatttgatcaaatatgtgagcatctaatgaattgatgggagccgttagattaaa 37437963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 39861119 - 39861007
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa-agttggat 184  Q
    |||||||||||||||||| ||||||||||| ||||| | ||||||  ||||||||||| |||||||||||||||| |||||||  ||||||  |||| ||    
T  39861119 aagaaagaataaattattactaaaattaaattttggattatttga--aagcatgtgagcatttaatgaattgatgggagacgtcggattaatggttgaat 39861022  T
Q  185 taatggttatgattt 199  Q
    ||||||||| |||||    
T  39861021 taatggttaagattt 39861007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 5332068 - 5332194
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    ||||||||||||||||||||||||||| |||||  ||  ||| |||||||||||||||||   ||||||| || ||| ||| ||||||||||||   | |    
T  5332068 agaagaaagaataaattatttctaaaaataaaaggtgagtcacttgatcaagcatgtgagctcttaatgagtttatgggagccgttagattaaaaccgta 5332167  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    ||||||| || ||||||||||||||||    
T  5332168 ttaatggctaggatttggtgtcaaatt 5332194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 29267744 - 29267878
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||| | |||||  | | ||| ||||||||||||||||| | ||||||| || ||||||  ||||||||||    
T  29267744 taaccaaaagaagaaagaataaattatttctaataataaaaggtagatcacttgatcaagcatgtgagcacttaatgagtttatgagaatcgttagatta 29267843  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||     |||||||| || ||||||||||||||||    
T  29267844 aaaccatattaatggctaagatttggtgtcaaatt 29267878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 5331055 - 5330929
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    |||||||||  |||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||||   | |    
T  5331055 agaagaaagtttaaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgta 5330956  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    ||||||| ||  |||||||||||||||    
T  5330955 ttaatggctagaatttggtgtcaaatt 5330929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 39130994 - 39131049
Alignment:
Q  155 ttgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  39130994 ttgatgagagacgtcggattaaagtttgattaatggttatgatttggtgtcaaatt 39131049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 42986798 - 42986681
Alignment:
Q  93 aataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggtt 192  Q
    |||||||||||| |||||||||||  ||| ||| |||||||| |||| ||| | |||||||||| ||||||| | ||| ||||||     |||||||| |    
T  42986798 aataaattatttataaaattaaaaggtgggtcacttgatcaaacatgcgagcacttaatgaattaatgagagccattaaattaaaacattattaatggct 42986699  T
Q  193 atgatttggtgtcaaatt 210  Q
    ||||||||||||||||||    
T  42986698 atgatttggtgtcaaatt 42986681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 42987383 - 42987495
Alignment:
Q  95 taaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttat 194  Q
    |||||||||| |||||||||||  ||| ||| |||||||||||| |||| | |||||||||||||| ||  | ||||||||||  |  |||||| ||||     
T  42987383 taaattatttttaaaattaaaaggtgggtcacttgatcaagcatatgagcacttaatgaattgatgtgaacctttagattaaaactatattaatagttag 42987482  T
Q  195 gatttggtgtcaa 207  Q
    |||||||||||||    
T  42987483 gatttggtgtcaa 42987495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 39861509 - 39861544
Alignment:
Q  18 atagtgggagaaatcaaatggcaatcattagtgcaa 53  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39861509 atagtgggagaaatcaaatggcaatcattggtgcaa 39861544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 19653722 - 19653885
Alignment:
Q  49 tgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaat 146  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||| ||    
T  19653722 tgcaaaatataacgacaatggtaagtaattaaccaagagaagaaagaataaattatttctaaaattaaaatttggatcatttgattaaacatatgagcat 19653821  T
Q  147 ttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  19653822 ttaatgaattgatgagagacgtcagattaaagttggattaatggttaggatttggtgtcaaatt 19653885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 8993064 - 8992942
Alignment:
Q  88 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 187  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  8993064 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaagcatgtgagtatttaatgaattgatgagagacgttggattaaagttgaattaa 8992965  T
Q  188 tggttatgatttggtgtcaaatt 210  Q
    |||||||||||| ||||||||||    
T  8992964 tggttatgatttagtgtcaaatt 8992942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 9017511 - 9017389
Alignment:
Q  88 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 187  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  9017511 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaagcatgtgagtatttaatgaattgatgagagacgttggattaaagttgaattaa 9017412  T
Q  188 tggttatgatttggtgtcaaatt 210  Q
    |||||||||||| ||||||||||    
T  9017411 tggttatgatttagtgtcaaatt 9017389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 8993481 - 8993605
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||||| | |||||||||||| |||||||| |||||| |||| ||||||||||||| ||||||||||| |||    
T  8993481 aagaaagaataaattgtttctaaaattaaaatttagatcatttgatcaaacatgtgagcatttaaagaatggatgagagacgttggattaaagttgaatt 8993580  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  8993581 aatggttatgatttggtgtcaaatt 8993605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 9017928 - 9018052
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||||| | |||||||||||| |||||||| |||||| |||| ||||||||||||| ||||||||||| |||    
T  9017928 aagaaagaataaattgtttctaaaattaaaatttagatcatttgatcaaacatgtgagcatttaaagaatggatgagagacgttggattaaagttgaatt 9018027  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  9018028 aatggttatgatttggtgtcaaatt 9018052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 18649796 - 18649919
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||||| | | ||||| | ||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||    
T  18649796 aagaaagaataaattgtttctaaaattaaaatttagataatttgtt-aagcatgtgagcattcaatgaattgatgagagacgtcggattaaagttgaatt 18649894  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  18649895 aatggttatgatttggtgtcaaatt 18649919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 32907584 - 32907461
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||  |||||||||||  ||||||||||||||| ||||||| ||||||| |||| |||    
T  32907584 aagaaagaataaattatttctaaaattaaattttggattatttga--aagcatgtgagcctttaatgaattgatgggagacgtcagattaaggttgaatt 32907487  T
Q  186 aatggttatgatttggtgtcaaatta 211  Q
    |||||||| |||||||||||||||||    
T  32907486 aatggttaagatttggtgtcaaatta 32907461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 9280828 - 9280913
Alignment:
Q  125 atttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||    
T  9280828 atttgatcaagcatgtgagaatttaataaattgatgagagactttagattaaagttggattaatgatttggatttggtgtcaaatt 9280913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 19651181 - 19651106
Alignment:
Q  135 gcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  19651181 gcatgtgagcatttaatgaattaatgagagacgtcagattaaagttggattaatgattaggatttggtgtcaaatt 19651106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 18153421 - 18153293
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    ||||||||||||||||| | |||||||||||||||||  |   ||||||||  ||||||||||    |||||||||| ||| ||  ||||||||||||      
T  18153421 caagagaagaaagaatatagtatttctaaaattaaaaggtatatcatttga--aagcatgtgaacgcttaatgaatttatgcgaaccgttagattaaaac 18153324  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    |  ||||||||||| ||||||||||||||||    
T  18153323 tatattaatggttaggatttggtgtcaaatt 18153293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 18154351 - 18154451
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||||||||||||||| || ||||||||||| |||||||||  | | | |||||| ||| |||||||| | ||||||||||||||  |  ||||||||||    
T  18154351 taaccaagagaagaaaaaaaaaattatttct-aaattaaaaggttgattatttgaccaaacatgtgagcacttaatgaattgatggaaaccgttagatta 18154449  T
Q  176 aa 177  Q
    ||    
T  18154450 aa 18154451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 43334618 - 43334747
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  43334618 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttgatcaagcatgtgagcatttaatgaattgatgatagacgttagattaaagt 43334716  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    || ||||||||||||||||||||||||||||    
T  43334717 tgaattaatggttatgatttggtgtcaaatt 43334747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 3475061 - 3474937
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||    
T  3475061 aagaaagaataaattgtttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgagagacgttggattaaagttgaatt 3474962  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  3474961 aatggttatgatttggtgtcaaatt 3474937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 30469992 - 30470121
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  30469992 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttgatcaagcatgtgagcatttaatgaattgatgatagacgtttgattaaagt 30470090  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    || ||||||||||||||||||||||||||||    
T  30470091 tgaattaatggttatgatttggtgtcaaatt 30470121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 26774153 - 26774029
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |||    
T  26774153 aagaaagaataaattatttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgacgagagacgttggattaaagttgaatt 26774054  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||| ||||||||||    
T  26774053 aatggttatgatttagtgtcaaatt 26774029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 3163389 - 3163518
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    ||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  3163389 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttaatcaagcatgtgagcatttaatgaattgatgatagacgttggattaaagt 3163487  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    || ||||||||||||||||||||||||||||    
T  3163488 tgaattaatggttatgatttggtgtcaaatt 3163518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 3475469 - 3475591
Alignment:
Q  88 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 187  Q
    ||||||||||||| ||||| |||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  3475469 gaaagaataaattgtttcttaaattaaaatttagataatttgatcaagcatgtgagtatttaatgaattgatgagagacgtcagattaaagttggattaa 3475568  T
Q  188 tggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||    
T  3475569 tggttatgatttggtgtcaaatt 3475591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 52 - 210
Target Start/End: Complemental strand, 3163063 - 3162904
Alignment:
Q  52 aaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaattta 149  Q
    ||||||||| ||||| ||||||||  ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||    
T  3163063 aaaatataatgaaaacggtaagtaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaagcatgtgagcattta 3162964  T
Q  150 atgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  3162963 atgatttgatgagagacgtcagattaaag-tggattaatggttaggatttggtgtcaaatt 3162904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 46428010 - 46428139
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    ||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  46428010 caagagaagaaagaa-aaattgtttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgatagacgttggattaaagt 46428108  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    || |||||||||||| |||||||||||||||    
T  46428109 tgaattaatggttataatttggtgtcaaatt 46428139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 30469708 - 30469547
Alignment:
Q  50 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatt 147  Q
    ||||||||||| ||||| ||||||||  ||| ||||| |||||  ||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||    
T  30469708 gcaaaatataatgaaaacggtaagtaattaatcaagaaaagaagaaataaattatttctaaaattaaaatttggattatttgttcaagcatgtgagcatt 30469609  T
Q  148 taatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||    
T  30469608 taatgatttgatgagagacgtcaaattaaag-tggattaatggttaggatttggtgtcaaatt 30469547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 26774573 - 26774691
Alignment:
Q  88 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 187  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||    |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  26774573 gaaagaataaattatttctaaaattaaaatttagataatttgatcaag----tgagcatttaatgaattgatgagagacgtcagattaaagttggattaa 26774668  T
Q  188 tggttatgatttggtgtcaaatt 210  Q
    ||||||||||||| |||||||||    
T  26774669 tggttatgatttgatgtcaaatt 26774691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 43334330 - 43334167
Alignment:
Q  50 gcaaaatataacgaaaatggtaagta------taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgag 143  Q
    ||||||||||| ||||| ||||||||      ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||| |||||||||    
T  43334330 gcaaaatataatgaaaacggtaagtaattaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaggcatgtgag 43334231  T
Q  144 aatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaa 208  Q
     ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  43334230 catttaatgatttgatgagagacgtcagattaaag-tggattaatggttatgatttgatgtcaaa 43334167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 8487695 - 8487829
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  8487695 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 8487794  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  || |||||||| || ||||||||||||||||    
T  8487795 aaactgtattaatggctaggatttggtgtcaaatt 8487829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 30660013 - 30659890
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||| ||| ||||||||||||||||||||||||  ||||||||||| |||    
T  30660013 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgcgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 30659915  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  30659914 aatggttatgatttggtgtcaaatt 30659890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 37422717 - 37422594
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| |||    
T  37422717 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgtgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 37422619  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    ||||||||||||||| |||||||||    
T  37422618 aatggttatgatttgatgtcaaatt 37422594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 38816835 - 38816721
Alignment:
Q  96 aaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatg 195  Q
    ||||| |||||||||||||||||| | | ||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  38816835 aaattgtttctaaaattaaaatttagataatttgatcaagcatgtgagcatttgatgaattgatgagagacatcagattaaagttagattaatagttatg 38816736  T
Q  196 atttggtgtcaaatt 210  Q
    |||||||||||||||    
T  38816735 atttggtgtcaaatt 38816721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 8513350 - 8513484
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| ||| ||||||||||    
T  8513350 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagatta 8513449  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  || |||| ||| || ||||||||||||||||    
T  8513450 aaactgtattattggctaggatttggtgtcaaatt 8513484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 21866271 - 21866401
Alignment:
Q  77 aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa 176  Q
    |||||| ||||||||||||||||||||| |||||||||||  ||| |||||||||||| |||||||| | ||||||||||||||||| || |||||||||    
T  21866271 aaccaaaagaagaaagaataaattatttttaaaattaaaaggtgggtcatttgatcaaacatgtgagcacttaatgaattgatgagaaacattagattaa 21866370  T
Q  177 agttggattaatggttatgatttggtgtcaa 207  Q
    |  || ||||||||||| ||||| |||||||    
T  21866371 aactgtattaatggttaggattttgtgtcaa 21866401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 30660406 - 30660529
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||||| | | ||||| | ||||||| ||| ||| ||||||||||||||||||||  ||||||||||| |||    
T  30660406 aagaaagaataaattgtttctaaaattaaaatttagataatttgtt-aagcatgggagcattcaatgaattgatgagagacgtcggattaaagttgaatt 30660504  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    ||||||||||||||||| |||||||    
T  30660505 aatggttatgatttggtctcaaatt 30660529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 8487198 - 8487064
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  8487198 taaccaaaagaacaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 8487099  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    |    | |||||||| || ||||||||||||||||    
T  8487098 agcccgtattaatggctaggatttggtgtcaaatt 8487064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 8512873 - 8512739
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  8512873 taaccaaaagaataaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 8512774  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    |    | |||||||| || ||||||||||||||||    
T  8512773 agcccgtattaatggctaggatttggtgtcaaatt 8512739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 46427693 - 46427531
Alignment:
Q  50 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaag----aataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgag 143  Q
    ||||||||||| ||||| ||||||||  ||| ||||| ||||| |    ||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  46427693 gcaaaatataatgaaaacggtaagtaattaatcaagaaaagaaggaataaataaattatttctaaaattaaaatttggattatttgttcaagcatgtgag 46427594  T
Q  144 aatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaa 207  Q
     ||||||||| |||||||||||| | | ||||||| ||||||||| ||||  ||||||||||||    
T  46427593 catttaatgatttgatgagagacatcatattaaag-tggattaatagttagaatttggtgtcaa 46427531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 25245548 - 25245682
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||| ||| |||||||| |||||||| | |||||||||| ||||||| | ||||||||    
T  25245548 taaccaaaagaagaaagaataaattatttctaaaattaaaaggtggatcacttgatcaaacatgtgagcacttaatgaattaatgagagtcattagatta 25245647  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||| ||||    
T  25245648 aaacagtattaatggctaagatttggtgtctaatt 25245682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 31178808 - 31178675
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||||||||||||| |||||||||||| |||||  ||| ||| ||||||||||||||||| ||||||||| || ||| ||| ||||||||||    
T  31178808 taaccaaaagaagaaagaataa-ttatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagtatttaatgagtttatgggagccgttagatta 31178710  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  || |||||||| || ||||||||||||||||    
T  31178709 aaactgtattaatggctaggatttggtgtcaaatt 31178675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 38060016 - 38059882
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||    
T  38060016 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagatta 38059917  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||||||||    
T  38059916 aaaccgtattaatggctaggatttggtgtcaaatt 38059882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 28451293 - 28451163
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||||||||||| |||||||||||||| |||||  | | ||| ||||||||| ||||||| | |||||||||||||||||| ||||||||||    
T  28451293 taaccaaaagaagaaagaatgaattatttctaaaaataaaagattggtcacttgatcaagtatgtgagtacttaatgaattgatgagagccgttagatta 28451194  T
Q  176 aagttggattaatggttatgatttggtgtca 206  Q
    ||   | |||||||| || ||||||||||||    
T  28451193 aaaccgtattaatggctaggatttggtgtca 28451163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 21865727 - 21865601
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    ||||||||||||||||||||| |||||||||||  ||| ||| ||||||||  ||||||| | |||||||||||||| ||  | || |||||||  |  |    
T  21865727 agaagaaagaataaattatttttaaaattaaaaggtgggtcacttgatcaaaaatgtgagcacttaatgaattgatgtgaaccttttgattaaaactata 21865628  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    | ||||||||  |||||||||||||||    
T  21865627 tgaatggttaaaatttggtgtcaaatt 21865601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 31179808 - 31179939
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| || || ||||||| ||| | ||||||| || ||| ||| ||||||||||    
T  31179808 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcactt-at-aagcatgcgagcacttaatgagtttatgggagccgttagatta 31179905  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  || | ||||||||| ||||||||||||||||    
T  31179906 aaactgta-taatggttaagatttggtgtcaaatt 31179939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 207
Target Start/End: Original strand, 26076786 - 26076911
Alignment:
Q  82 agagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttg 181  Q
    ||||||||  |||||||| |||||||||| || ||| ||| |||||||||||||||  ||||   | |||||||| |  || |||||| |||||||||||    
T  26076786 agagaagatggaataaatcatttctaaaagtacaatgtgggtcatttgatcaagcacatgagcgatcaatgaattaaaaagtgacgttggattaaagttg 26076885  T
Q  182 gattaatggttatgatttggtgtcaa 207  Q
     |||| |||| |  ||||||||||||    
T  26076886 tattagtggtcagaatttggtgtcaa 26076911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 207
Target Start/End: Original strand, 26100573 - 26100698
Alignment:
Q  82 agagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttg 181  Q
    ||||||||  |||||||| |||||||||| || ||| ||| |||||||||||||||  ||||   | |||||||| |  || |||||| |||||||||||    
T  26100573 agagaagatggaataaatcatttctaaaagtacaatgtgggtcatttgatcaagcacatgagcgatcaatgaattaaaaagtgacgttggattaaagttg 26100672  T
Q  182 gattaatggttatgatttggtgtcaa 207  Q
     |||| |||| |  ||||||||||||    
T  26100673 tattagtggtcagaatttggtgtcaa 26100698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 43742862 - 43742755
Alignment:
Q  103 ttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggt 202  Q
    |||||| |||||||| ||| | ||||||| ||||||||||| ||||||||| | |||| ||  ||||||||||||  || |||||| | ||  ||||| |    
T  43742862 ttctaatattaaaatatggataatttgattaagcatgtgagcatttaatgagtcgatgggaaccgttagattaaaactgtattaatagctagaatttgat 43742763  T
Q  203 gtcaaatt 210  Q
    ||||||||    
T  43742762 gtcaaatt 43742755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 42883295 - 42883470
Alignment:
Q  23 gggagaaatcaaatggcaatcat-----tagtgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaa 115  Q
    |||| ||||||||||||||||||     || |||||||||||||||||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||    
T  42883295 gggaaaaatcaaatggcaatcatcttcctaatgcaaaatataacgaaaatggtaaatagttaactaagagaagaaagaataaattatttataaaattaaa 42883394  T
Q  116 atttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggt 191  Q
    |||||  ||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  42883395 atttgaatcatttgatcaagcatgtgaacatttaatgaattgatgagggacgtcagattaaagttggattaatggt 42883470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 21825039 - 21825168
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  21825039 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttgatcaagcatgtgagcatttaatgaattgatgatagacgttggattaaagt 21825137  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    || |||||||||||| |||||||||||||||    
T  21825138 tgaattaatggttataatttggtgtcaaatt 21825168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 42882917 - 42882783
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||| | ||||||||||| ||||| ||  |||||||||||||||||| ||||||||||||    
T  42882917 taaccaatagaagaaaaaataaattatttctaaaattaaatttttgatcatttgatcaggcatgggaacatttaatgaattgatgagggacgttagatta 42882818  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    || ||||||||||||||||||||||||||||||||    
T  42882817 aaattggattaatggttatgatttggtgtcaaatt 42882783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 21824753 - 21824592
Alignment:
Q  50 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatt 147  Q
    ||||||||||| |||||  |||||||  ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||    
T  21824753 gcaaaatataatgaaaacagtaagtaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaagcatgtgagcatt 21824654  T
Q  148 taatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||    
T  21824653 taatgatttgatgagagacgtcagattaaag-tggattaatggttagaatttggtgtcaaatt 21824592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 45920174 - 45920308
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| ||| ||||||||||    
T  45920174 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagatta 45920273  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  || |||||||| ||  |||||||||||||||    
T  45920274 aaactgtattaatggctagaatttggtgtcaaatt 45920308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 45919680 - 45919546
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  45919680 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 45919581  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||  || |||||| |||||||||    
T  45919580 aaaccgtattaatgactaggatttgatgtcaaatt 45919546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 46618519 - 46618384
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||| ||| |||||||| |||||||| | ||||||| || ||||||  ||||||||||    
T  46618519 taaccaaaagaagaaagaataaattatttctaaaaataaaatgtggatcacttgatcaaacatgtgagcacttaatgagtttatgagaaccgttagatta 46618420  T
Q  176 aagttggattaatggttatgatttggtgtcaaatta 211  Q
    ||   | |||||||| || |||||| ||||||||||    
T  46618419 aaaccgtattaatggctaggatttgatgtcaaatta 46618384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 4158498 - 4158632
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||||||| |||||||||||||||||||||||||||||  |   |||||||||||| |||||||| | ||||| |||| |||  |  ||||||||||    
T  4158498 taaccaagagatgaaagaataaattatttctaaaattaaaagatatgtcatttgatcaaacatgtgagcacttaataaattaatggaaaccgttagatta 4158597  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    || ||| |||||||| || ||||||||||||||||    
T  4158598 aaattgtattaatggctaggatttggtgtcaaatt 4158632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 46619514 - 46619648
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||||||| |||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||    
T  46619514 taaccaaaagaagaaaaaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagatta 46619613  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||| | |||||||||||||||||||    
T  46619614 aaaccgtattaattgctatgatttggtgtcaaatt 46619648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 42058645 - 42058521
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    ||||||||||||||||||||| |||||||||||  |   ||||||||  ||||||||||  |||||||||||| ||||||  |||||||||||| ||  |    
T  42058645 agaagaaagaataaattatttttaaaattaaaaggtatatcatttga--aagcatgtgaacatttaatgaatttatgagaaccgttagattaaaattata 42058548  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    ||||| |||| ||||||||||||||||    
T  42058547 ttaatagttaggatttggtgtcaaatt 42058521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 41696015 - 41696141
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    |||||||||||||||||||||  |||| ||||   ||| ||| ||||||||||||||||| | |||||||||||||| ||| ||||||||||||   | |    
T  41696015 agaagaaagaataaattattttaaaaaataaaggatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagattaaaaccgta 41696114  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    ||||| | || ||||||||||||||||    
T  41696115 ttaatagctaagatttggtgtcaaatt 41696141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 29212155 - 29212062
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaa 177  Q
    |||||||| |||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| |||  |||||||||||    
T  29212155 agaagaaataataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatgggagctgttagattaaa 29212062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 24534111 - 24534196
Alignment:
Q  55 atataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcat 138  Q
    |||||| ||||||||||||||  ||||||||| |||||| ||||||||||||||||||||||||||||| | ||||  ||||||||    
T  24534111 atataatgaaaatggtaagtaattaaccaagaaaagaaataataaattatttctaaaattaaaatttggataattttttcaagcat 24534196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 41695553 - 41695419
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||| |||||||||||||||||||||| |||||  |||  || |||||||| |||||||  | ||||||||||||||  || ||||||||||    
T  41695553 taaccaaaagaaaaaagaataaattatttctaaaaataaaaaatgggccacttgatcaaacatgtgaacacttaatgaattgatggaagccgttagatta 41695454  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | ||||||  ||| ||||||||||||||||    
T  41695453 aaaccgtattaataattaggatttggtgtcaaatt 41695419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 24377837 - 24377937
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||| |||||||||||||||| ||| |||||||||||||||  ||| |||||| |||||||||||||  | |||| |||||||| ||||  |||||||||    
T  24377837 taactaagagaagaaagaatagattgtttctaaaattaaaaggtggttcattt-atcaagcatgtgatcacttaacgaattgattagagctgttagatta 24377935  T
Q  176 aa 177  Q
    ||    
T  24377936 aa 24377937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 4157940 - 4157900
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaa 116  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  4157940 taacgaagagaagaaagaataaattatttctaaaattaaaa 4157900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 52363170 - 52363111
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaag 135  Q
    ||||||| ||| |||||||||  ||||||||||||||||||||||  |||||||||||||    
T  52363170 taaccaatagatgaaagaatattttatttctaaaattaaaatttgcatcatttgatcaag 52363111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 4157877 - 4157817
Alignment:
Q  147 ttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaa 207  Q
    ||||||||||||||| |  |||| ||| ||| ||| ||||||||||| |||||||||||||    
T  4157877 ttaatgaattgatgaaaaccgttcgatcaaaattgtattaatggttaggatttggtgtcaa 4157817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 51827731 - 51827597
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||||  |||||    
T  51827731 taaccaagagaagatagaatattttatttctaaaattaaaatttgcatcatttgatcaagcatgtgagcatttaatgaattgttgagagacgtcggatta 51827632  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||||||||||||    
T  51827631 aagttggattaatggttatgatttggtgtcaaatt 51827597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 41710093 - 41710217
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||    
T  41710093 aagaaagaataaattgtttctaaaattaaaatttagatcatttgatcaagcatgtgagcatttaatgaattgatgagagacgttggattaaagttgaatt 41710192  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||| ||||||||||||||||||||    
T  41710193 aatgattatgatttggtgtcaaatt 41710217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 41709676 - 41709554
Alignment:
Q  88 gaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaa 187  Q
    ||||||||||||| |||||||||||||||||| | | |||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  41709676 gaaagaataaattgtttctaaaattaaaatttagataatttgatcaaacatgtgagtatttaatgaattgatgagagacgtcatattaaagttggattaa 41709577  T
Q  188 tggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||    
T  41709576 tggttatgatttggtgtcaaatt 41709554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 28908507 - 28908671
Alignment:
Q  48 gtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaa 145  Q
    |||||||||||||| ||||||| || |||  |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |    
T  28908507 gtgcaaaatataacaaaaatgggaactattcaaccaagaaaagaaagaataaattatttctaaaattaaaatttggataatttgatcaagcatgtgagca 28908606  T
Q  146 tttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||| ||||||||||| ||||   ||||| ||||||||||||||||  |||| ||||||||||    
T  28908607 tttaatcaattgatgagaaacgtcgaattaatgttggattaatggttagaattttgtgtcaaatt 28908671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 30834288 - 30834452
Alignment:
Q  48 gtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaa 145  Q
    |||||||||||||| ||||||| || |||  |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |    
T  30834288 gtgcaaaatataacaaaaatgggaactattcaaccaagaaaagaaagaataaattatttctaaaattaaaatttggataatttgatcaagcatgtgagta 30834387  T
Q  146 tttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||| || |  | |||| |||| ||||||||||| |||||  |||||||||    
T  30834388 tttaatgaattgatgagaaacatcgggttaatgttgaattaatggttaggatttaatgtcaaatt 30834452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 51829342 - 51829506
Alignment:
Q  48 gtgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaa 145  Q
    |||||||||||||| |||| || || |||  |||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |    
T  51829342 gtgcaaaatataacaaaaacggaaactattcaaccaagaaaagaaagaataaattatttctaaaattaaaatttggatcatttcatcaagcatgtgagca 51829441  T
Q  146 tttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||  ||||  |||||| |||||||||||||| | |||||| | |||||||    
T  51829442 tttaatgaattgatgagcaacgtcggattaatgttggattaatggtaaggatttgatttcaaatt 51829506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 53948818 - 53948695
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| |||||| |||| ||||||||||||||||||||||||  ||||||||||| |||    
T  53948818 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatttgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 53948720  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  53948719 aatggttatgatttggtgtcaaatt 53948695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 43400704 - 43400789
Alignment:
Q  125 atttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  43400704 atttgatcaagcatgtgagtatttaatgaattgatgagagacgttggattaaagttgaattaatggttatgatttggtgtcaaatt 43400789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 53949211 - 53949334
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||||||||||||||| || | | ||||| | ||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||    
T  53949211 aagaaagaataaattgtttctaaaattaaaaattagataatttgtt-aagcatgtgagcattcaatgaattgatgagagacgtcggattaaagttgaatt 53949309  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  53949310 aatggttatgatttggtgtcaaatt 53949334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 28908054 - 28907921
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||| ||||||||||||| ||  ||||||||||||||||||||||  |||||| ||||| |||||||  ||||||||||||| ||||||||||  |||||    
T  28908054 taactaagagaagaaaga-tattttatttctaaaattaaaatttgcatcatttaatcaaacatgtgaccatttaatgaattgttgagagacgtcggatta 28907956  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||| |||||| |||||||||    
T  28907955 aagttggattaatggttaggatttgatgtcaaatt 28907921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 53948485 - 53948593
Alignment:
Q  101 atttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttg 200  Q
    ||||||||||| || |||||  ||||||||||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||||| ||||||    
T  53948485 atttctaaaat-aatatttgcatcatttgatcaagcatgtgagcatttaatgaattgtagagagacgtcagattaaagttggattaatggttaggatttg 53948583  T
Q  201 gtgtcaaatt 210  Q
    ||||||||||    
T  53948584 gtgtcaaatt 53948593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 53949507 - 53949373
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| ||| ||||||||||    
T  53949507 taaccaaaagaaaaaagaataaattatttctaaaaataaaagatggatcacttgatcaagcatgtgagcacttaatgaattgatgggagccgttagatta 53949408  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||  |||||||||||||||||||    
T  53949407 aaaccgtattaatgactatgatttggtgtcaaatt 53949373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 47169044 - 47169178
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||    
T  47169044 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagatta 47169143  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||||||||    
T  47169144 aaaccgtattaatggctaggatttggtgtcaaatt 47169178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 38798410 - 38798287
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||||| | | ||||| | ||||||| ||| ||| |||||||||||| || ||||  ||||||||||| |||    
T  38798410 aagaaagaataaattgtttctaaaattaaaatttagataatttgtt-aagcatgcgagcattcaatgaattgatgtgaaacgtcggattaaagttgaatt 38798312  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    ||||||||| |||||||||||||||    
T  38798311 aatggttataatttggtgtcaaatt 38798287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 47168056 - 47167922
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || | ||||  ||||||||||    
T  47168056 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtggatcacttgatcaagcatgtgagcacttaatgagtttacgagaaccgttagatta 47167957  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||||||||    
T  47167956 aaaccgtattaatggctaggatttggtgtcaaatt 47167922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 30833838 - 30833747
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgt 168  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||  |||||||| |||||||||||| ||||||||||||| ||||||||||    
T  30833838 taaccaagagaagaaaga-tattttatttctaaaattaaaatttgcatcatttgaacaagcatgtgagcatttaatgaattgttgagagacgt 30833747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 11238679 - 11238551
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    |||||| ||||||||||||||||||||||||||||||  |   |||||| |  ||||||||||| | |||||||||||||| ||  |||||||| ||| |    
T  11238679 caagaggagaaagaataaattatttctaaaattaaaaagtatgtcatttaa--aagcatgtgagcacttaatgaattgatgggaaccgttagatgaaaat 11238582  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    || ||||||||||| ||||||||||||||||    
T  11238581 tgtattaatggttaggatttggtgtcaaatt 11238551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 53949972 - 53950098
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    |||| ||| |||||||||||||||||| |||||  ||| ||| |||||||| |||||||| | ||||||||||||||  || |||||||||||    | |    
T  53949972 agaataaaaaataaattatttctaaaaataaaagatggatcacttgatcaaacatgtgagcacttaatgaattgatggaagccgttagattaagcccgta 53950071  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    ||||||| || ||||||||||||||||    
T  53950072 ttaatggctaggatttggtgtcaaatt 53950098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 20202222 - 20202090
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| |||||||| ||||| || | |  |||||||||||  || ||||||||||    
T  20202222 taaccaaaagaagaaagaataaattatttctaaaaataaaagatggatcacttgatcaaacatgtaagcact--atgaattgatggaagccgttagatta 20202125  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| ||  |||||||||||||||    
T  20202124 aaaccgtattaatggctagaatttggtgtcaaatt 20202090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 20200524 - 20200629
Alignment:
Q  105 ctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgt 204  Q
    |||||| |||||  ||| ||| || |||||||||||||  | ||| |||||||||| ||| ||||||||||||   | |||||||| || ||||||||||    
T  20200524 ctaaaaataaaagatgggtcacttaatcaagcatgtgaacacttagtgaattgatgggagccgttagattaaaaccgtattaatggctaggatttggtgt 20200623  T
Q  205 caaatt 210  Q
    ||||||    
T  20200624 caaatt 20200629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 20202708 - 20202813
Alignment:
Q  105 ctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgt 204  Q
    |||||| |||||  ||| ||| || |||||||||||||  | ||| |||||||||| ||| ||||||||||||   | |||||||| || ||||||||||    
T  20202708 ctaaaaataaaagatgggtcacttaatcaagcatgtgaacacttagtgaattgatgggagccgttagattaaaaccgtattaatggctaggatttggtgt 20202807  T
Q  205 caaatt 210  Q
    ||||||    
T  20202808 caaatt 20202813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 20200038 - 20199998
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaa 116  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  20200038 taaccaaaagaagaaagaataaattatttctaaaaataaaa 20199998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 38798788 - 38798874
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttg 181  Q
    ||||||||||||||| |||||||||||||||        ||| ||| ||||||||||| ||||||| ||||||||||||||||   ||||||||||    
T  38798788 aagaaagaataaattgtttctaaaattaaaa--------attagat-aagcatgtgagcatttaataaattgatgagagacgtcgaattaaagttg 38798874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 24485855 - 24485976
Alignment:
Q  89 aaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggattaat 188  Q
    ||||||||||||| |  |||||||||||  |   |||||||||||| ||||| |  | ||||||||||||||  |  |||||||||||| ||  ||||||    
T  24485855 aaagaataaattactattaaaattaaaaggtaaatcatttgatcaaacatgtaaccacttaatgaattgatggaaaccgttagattaaaattatattaat 24485954  T
Q  189 ggttatgatttggtgtcaaatt 210  Q
    |  |||||||| ||||||||||    
T  24485955 gactatgatttagtgtcaaatt 24485976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 42519809 - 42519675
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||| || |||| ||||||||||||||||||||||||  |||||    
T  42519809 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagtatttgagtatttaatgaattgatgagagacgtcggatta 42519710  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||| |||||||||||||||||||||||||||||    
T  42519709 aagtttgattaatggttatgatttggtgtcaaatt 42519675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 42520289 - 42520452
Alignment:
Q  49 tgcaaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaat 146  Q
    ||||||||||||| ||||||| || ||   |||||||| ||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||| ||    
T  42520289 tgcaaaatataacaaaaatgggaactaatcaaccaagaaaagaaagaatacattatttctaaaattaaagtttggatcatttcatcaagcatgtgagcat 42520388  T
Q  147 ttaatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||||  |||||||||||||||    
T  42520389 ttaatgaattgatgagagacgttggattaatgttgaattaatggttagaatttggtgtcaaatt 42520452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 42521578 - 42521712
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||||||| ||||||||||    
T  42521578 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagccgttagatta 42521677  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||||||||    
T  42521678 aaaccgtattaatggctaggatttggtgtcaaatt 42521712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 23206089 - 23206215
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||||||| ||||||||||||   | |    
T  23206089 agaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagccgttagattaaaaccgta 23206188  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    ||||||| || ||||||||||||||||    
T  23206189 ttaatggctaggatttggtgtcaaatt 23206215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 42520786 - 42520652
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||||||| ||||||||||    
T  42520786 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgagagtcgttagatta 42520687  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || |||||||||| |||||    
T  42520686 aaaccgtattaatggctaggatttggtgtaaaatt 42520652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 21147984 - 21148118
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||  | ||||||| || ||| ||| ||||||||||    
T  21147984 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgaacacttaatgagtttatgggagccgttagatta 21148083  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||||||||    
T  21148084 aaaccgtattaatggctaggatttggtgtcaaatt 21148118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 21146097 - 21145971
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    |||||||||  |||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||||   | |    
T  21146097 agaagaaagtttaaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgta 21145998  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    ||||||| || ||||||||||||||||    
T  21145997 ttaatggctaggatttggtgtcaaatt 21145971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 31218851 - 31218780
Alignment:
Q  89 aaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatg 160  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||| | |||||| |||| |||||||||||    
T  31218851 aaagaataaattatttctaaaattaaaaggtgggtcatttgatcaaccttgtgagcatttgatgaattgatg 31218780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 31219884 - 31220010
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    |||||||||||||||||| || |||||||||||  | | |||||||||||||| | |||| |  | |||||||||||  || ||||| ||||||  || |    
T  31219884 agaagaaagaataaattaattttaaaattaaaaggtaggtcatttgatcaagcttatgagcacatgatgaattgatggaagccgttacattaaaactgta 31219983  T
Q  184 ttaatggttatgatttggtgtcaaatt 210  Q
    ||||||   | ||||| ||||||||||    
T  31219984 ttaatgacgaagatttagtgtcaaatt 31220010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 1668 - 1798
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||| || |||| ||||||||||||||||||||||||  |||||    
T  1668 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagtatttgagtatttaatgaattgatgagagacgtcggatta 1767  T
Q  176 aagttggattaatggttatgatttggtgtca 206  Q
    ||||| |||||||||||||||||||||||||    
T  1768 aagtttgattaatggttatgatttggtgtca 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 1191 - 1033
Alignment:
Q  51 caaaatataacgaaaatggtaagtat--aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaattt 148  Q
    ||||||||||| ||||||| || ||   |||||||| |||||||||||||||||||||||||||||| ||||| ||||||   |||||||||||| ||||    
T  1191 caaaatataacaaaaatgggaactaatcaaccaagaaaagaaagaataaattatttctaaaattaaagtttggatcattt---caagcatgtgagcattt 1095  T
Q  149 aatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||| ||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||    
T  1094 aataaattgatgagagacgttggattaatgttgaattaatggttaggatttggtgtcaaatt 1033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 121473 - 121339
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||| || |||| ||||||||||||||||||||||||  |||||    
T  121473 taaccaagagaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagtatttgagtatttaatgaattgatgagagacgtcggatta 121374  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||||| |||||||||||||||||| ||||||||||    
T  121373 aagtttgattaatggttatgatttagtgtcaaatt 121339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 19386459 - 19386330
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||| ||| |||||||||    
T  19386459 caagagaagaaagaa-aaattgtttctaaaattaaaatttggatcatttgatcaagcatgtgagcatttaatgaattgataatagatgttggattaaagt 19386361  T
Q  180 tggattaatggttatgatttggtgtcaaatt 210  Q
    || ||||||||||||||||||||||||||||    
T  19386360 tgaattaatggttatgatttggtgtcaaatt 19386330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 19386778 - 19386939
Alignment:
Q  50 gcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatt 147  Q
    ||||||||||| ||||| ||||||||  ||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||| |||||||| |||| |||    
T  19386778 gcaaaatataatgaaaacggtaagtaattaatcaagaaaagaaggaataaattatttctaaaattaaaatttggattatttgttcaagcatatgagcatt 19386877  T
Q  148 taatgaattgatgagagacgttagattaaagttggattaatggttatgatttggtgtcaaatt 210  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  19386878 taatgatttgatgagagacgtcagattaaag-tggattaatggttaggatttagtgtcaaatt 19386939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 122842 - 122975
Alignment:
Q  77 aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa 176  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  122842 aaccaagaaaagaaagaatacattatttctaaaattaaagtttggatcatttcatcaagtatgtgagcatttaatgaattgatgagagacgttggattaa 122941  T
Q  177 agttggattaatggttatgatttggtgtcaaatt 210  Q
     |||| |||||||||||  |||||||||||||||    
T  122942 tgttgaattaatggttagaatttggtgtcaaatt 122975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 20202808 - 20202685
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| |||    
T  20202808 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgtgagcatttaatgaattgatgagagacgtcggattaaagttgaatt 20202710  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  20202709 aatggttatgatttggtgtcaaatt 20202685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 4776415 - 4776282
Alignment:
Q  77 aaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaa 176  Q
    |||||||| ||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||| ||||||||||||||||||  ||||  ||||||    
T  4776415 aaccaagaaaagaaagaataaattatttctaaaattgaaattttgatcaattgatcaagcatgtgagcatttaatgaattgatgagcaacgtcggattaa 4776316  T
Q  177 agttggattaatggttatgatttggtgtcaaatt 210  Q
     ||||||||||| |||| ||||| ||||||||||    
T  4776315 tgttggattaattgttaggatttagtgtcaaatt 4776282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 38956201 - 38956050
Alignment:
Q  49 tgcaaaatataacgaaaatggtaagta--taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaat 146  Q
    |||||||||||| ||||| ||||||||  ||| ||||| ||||||||||| |||||||||||||||||||||| | | ||||| ||||||||||||| ||    
T  38956201 tgcaaaatataatgaaaacggtaagtaattaatcaagaaaagaaagaatagattatttctaaaattaaaatttagataatttgttcaagcatgtgagcat 38956102  T
Q  147 ttaatgaattgatgagagacgttagattaaagttggattaatggttatgattt 199  Q
    ||||||| |||| |||||||||| |||||||| |||||||||||||| |||||    
T  38956101 ttaatgacttgacgagagacgttggattaaag-tggattaatggttaggattt 38956050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 8911734 - 8911857
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| |||||||||||||||||| | | ||||||| ||||||||||| ||||||||||||||||  | ||||  ||||||||||| |||    
T  8911734 aagaaagaataaattgtttctaaaattaaaatttagataatttgat-aagcatgtgagcatttaatgaattgatggaaaacgtcggattaaagttgaatt 8911832  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  8911833 aatggttatgatttggtgtcaaatt 8911857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 8911323 - 8911202
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||||||||||||||| || | | ||||||| ||||||||||| ||||||||| ||||||||||||||  ||||||||||| |||    
T  8911323 aagaaagaataaattgtttctaaaattaaaaattagataatttgat-aagcatgtgagtatttaatga-ttgatgagagacgtcggattaaagttgaatt 8911226  T
Q  186 aatggttatgatttggtgtcaaat 209  Q
    ||||||||||||||||||||||||    
T  8911225 aatggttatgatttggtgtcaaat 8911202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 39629401 - 39629535
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| || |||||||||||||| | |||||||||||||||||| ||||||||||    
T  39629401 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttaatcaagcatgtgagcacttaatgaattgatgagagccgttagatta 39629500  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  || |||||||| ||  |||||||||||||||    
T  39629501 aaactgtattaatggctagaatttggtgtcaaatt 39629535  T

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Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 20203197 - 20203320
Alignment:
Q  86 aagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttggatt 185  Q
    ||||||||||||||| ||||||||||||||||||   | ||||| | ||||||||||| ||| ||||||||||||| | ||||  ||||||||||| |||    
T  20203197 aagaaagaataaattgtttctaaaattaaaatttatataatttgtt-aagcatgtgagcattcaatgaattgatgaaaaacgtcggattaaagttgaatt 20203295  T
Q  186 aatggttatgatttggtgtcaaatt 210  Q
    |||||||||||||||||||||||||    
T  20203296 aatggttatgatttggtgtcaaatt 20203320  T

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Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 42848886 - 42848752
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||  | |||||||||||||| ||| ||||||||||    
T  42848886 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgaacacttaatgaattgatgggagtcgttagatta 42848787  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||     |||||||| || ||||||||||||||||    
T  42848786 aaaccatattaatggctaggatttggtgtcaaatt 42848752  T

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Target: chr2; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 42849385 - 42849519
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| || |||||||||||||| | |||||||||||||| ||| ||||||||||    
T  42849385 taaccaaaagaaaaaagaataaattatttctaaaaataaaagatgggtcacttaatcaagcatgtgagcacttaatgaattgatgggagccgttagatta 42849484  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||||||||||||||||    
T  42849485 aaaccgtattaatggctaggatttggtgtcaaatt 42849519  T

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Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 39628906 - 39628805
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||||||||||  || ||||||||||    
T  39628906 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgggtcacttgatcaagcatgtgagcacttaatgaattgatggaagccgttagatta 39628807  T
Q  176 aa 177  Q
    ||    
T  39628806 aa 39628805  T

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Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 4776896 - 4776987
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacg 167  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||| ||| |||||    
T  4776896 taaccaagcgaagaaagaatattttatttctaaaattaaaatttgcatcatttgatcaagcatatgagcatttaatgaattgttgaaagacg 4776987  T

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Target: chr2; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 44929019 - 44929138
Alignment:
Q  80 caagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagt 179  Q
    |||||||||||| ||||||||||||||||||||||||  ||| ||||||||||||  ||||||| |||||||||||||||||    |||||||||||| |    
T  44929019 caagagaagaaataataaattatttctaaaattaaaaggtgggtcatttgatcaaatatgtgagcatttaatgaattgatgaacaccgttagattaaaat 44929118  T
Q  180 tggattaatggttatgattt 199  Q
    |  |||||||| || |||||    
T  44929119 tatattaatggctaggattt 44929138  T

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Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 2477372 - 2477242
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| || |||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || |||  || ||||||||||    
T  2477372 taaccaaaaggagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatggaagccgttagatta 2477273  T
Q  176 aagttggattaatggttatgatttggtgtca 206  Q
    ||   | |||||||| || ||||||||||||    
T  2477272 aaaccgtattaatggctaggatttggtgtca 2477242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 2477851 - 2477973
Alignment:
Q  84 agaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagattaaagttgga 183  Q
    |||||||||  ||||||||||||||||||||||  ||| ||| ||||||||||||||||| | ||||||| || ||| ||| ||||||||||||   | |    
T  2477851 agaagaaagtttaaattatttctaaaattaaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatgggagccgttagattaaaaccgta 2477950  T
Q  184 ttaatggttatgatttggtgtca 206  Q
    ||||||| || ||||||||||||    
T  2477951 ttaatggctaggatttggtgtca 2477973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 13327913 - 13327779
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||||||| |||||||||||||||||| |||||  ||| ||| |||||||||||||||||   | ||||| || ||  ||| ||||||||||    
T  13327913 taaccaaaagaagaaataataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcgctcaatgagtttatcggagccgttagatta 13327814  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | ||||||||||| ||||||||||||||||    
T  13327813 aaaccgtattaatggttaggatttggtgtcaaatt 13327779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 13328698 - 13328832
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||| ||||| |||||  ||| ||| ||||||||||||||||| | ||||| | || |||  || ||||||||||    
T  13328698 taaccaaaagaagaaagaataaattatttttaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaataagtttatggaagtcgttagatta 13328797  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| ||  |||||||||||||||    
T  13328798 aacccgtattaatggctagaatttggtgtcaaatt 13328832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 38273720 - 38273586
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    |||| ||||||||||||||||  || |||||||||||||||  |||||||||| |||||  ||||||| | |||  |||||||| |||| |||| |||||    
T  38273720 taactaagagaagaaagaataggttgtttctaaaattaaaaggtggctcatttaatcaaatatgtgagcacttatagaattgattagagccgttggatta 38273621  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  |  |||||||| || ||||||||||||||||    
T  38273620 aaactatattaatggataagatttggtgtcaaatt 38273586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 44926794 - 44926676
Alignment:
Q  93 aataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgag-aatttaatgaattgatgagagacgttagattaaagttggattaatggt 191  Q
    |||||||||||| |||||||||||  ||| ||| ||||||||| ||||||| | ||||||||||||||  ||  ||||| ||||||  || ||||||||     
T  44926794 aataaattatttgtaaaattaaaagatggatcagttgatcaagtatgtgagcactttaatgaattgattggaaccgttaaattaaaactgtattaatggg 44926695  T
Q  192 tatgatttggtgtcaaatt 210  Q
    || |||||| ||| |||||    
T  44926694 taggatttgatgtaaaatt 44926676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 25783 - 25649
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  |   ||| ||||||||||||||||  | |||||||||||||||||||||||||||||    
T  25783 taaccaaaagaagaaagaataaattatttctaaaaataaaacatttgtcacttgatcaagcatgtgaacacttaatgaattgatgagagacgttagatta 25684  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||  || |||||||| |  ||||||||||||||||    
T  25683 aaactgtattaatggctgggatttggtgtcaaatt 25649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 105679 - 105545
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||  ||| ||||||||||||||||  |  ||||||||||||| ||| ||||||||||    
T  105679 taaccaaaagaagaaagaataaattatttctaaaaataaaagatgcgtcacttgatcaagcatgtgaacacataatgaattgatgggagccgttagatta 105580  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | ||||||||||| ||||||||||||||||    
T  105579 aaaccgtattaatggttaagatttggtgtcaaatt 105545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 106176 - 106310
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | |||||||||||||| | | ||||||||||    
T  106176 taaccaaaagaataaagaataaattatttctaaaaataaaagatggatcacttgatcaagcatgtgagcacttaatgaattgatgggcgccgttagatta 106275  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    |    | ||||||||||| ||||||||||||||||    
T  106276 agcccgtattaatggttaggatttggtgtcaaatt 106310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 20897 - 20765
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||| ||| |||||||| |||||||  | |||||||||| ||  ||| | ||||||||    
T  20897 taaccaaaagaagaaagaataaattatttctaaaattaaaaggtggatcacttgatcaaacatgtgatcacttaatgaattaat--gagccattagatta 20800  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    || | | |||||||| || ||||| ||||||||||    
T  20799 aaatagtattaatggctaggatttagtgtcaaatt 20765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 2211 - 2312
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||||||||||||| | ||||||| || |||  || ||||||||||    
T  2211 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtgggtcacttgatcaagcatgtgagcacttaatgagtttatggaagccgttagatta 2310  T
Q  176 aa 177  Q
    ||    
T  2311 aa 2312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 779 - 650
Alignment:
Q  76 taaccaagagaagaaagaataaattatttctaaaattaaaatttggctcatttgatcaagcatgtgagaatttaatgaattgatgagagacgttagatta 175  Q
    ||||||| ||||||||||||||||||||||||||| |||||  ||| ||| ||||||     |||||| | ||||||| || ||| ||| ||||||||||    
T  779 taaccaaaagaagaaagaataaattatttctaaaaataaaaggtggatcacttgatc-----tgtgagcacttaatgagtttatgggagccgttagatta 685  T
Q  176 aagttggattaatggttatgatttggtgtcaaatt 210  Q
    ||   | |||||||| || ||| ||||||||||||    
T  684 aaaccgtattaatggctaggatctggtgtcaaatt 650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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