View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1110_low_35 (Length: 251)
Name: NF1110_low_35
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11074871 - 11074630
Alignment:
| Q |
1 |
gaattcaaaggctgaagattcaagaaaggtgtttatttcttgattgaaatttaaacattgtttccaatcacaaccttaaaacacgatttaacccatcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11074871 |
gaattcaaaggctgaagattcaagaaaggtgtttatttcttgattgaaatttaaacattgtttccaatcacaaccttaaaacacgatttaacccatcaac |
11074772 |
T |
|
| Q |
101 |
tctggggttatttgaattttaaaccaaccttctagctcaaacccaaaccaaaccaagacnnnnnnntaacaccaatgtgaacatgaaatgacttttacaa |
200 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
11074771 |
tctagggttatttggattttaaaccaaccttctagctcaaacccaaaccaaaccaagacaaacaaataacacaaatgtgaacatgaaatgaattttacaa |
11074672 |
T |
|
| Q |
201 |
aattagatttgtaatcaagagagaacccttagatagaattat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11074671 |
aattagatttgtaatcaagagagaacccttagatggaattat |
11074630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 11055581 - 11055349
Alignment:
| Q |
1 |
gaattcaaaggctgaagattcaagaaaggtgtttatttcttgattgaaatttaaacattgtttccaatcacaaccttaaaacacgatttaacccatcaac |
100 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
11055581 |
gaattcaaaggctgaaaatccaagaaaggtgtttatttcttgattaaaatttaaacattgtttccaatcacaacctcaaaacacgacttaaccca-caac |
11055483 |
T |
|
| Q |
101 |
tctggggttatttgaattttaaaccaaccttctagctcaaacccaaaccaaaccaagacnnnnnnntaacaccaatgtgaacatgaaatgacttttacaa |
200 |
Q |
| |
|
||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11055482 |
tctagggttatttggattttgaaccaaccttctagctcaaacccaaaccaaaccaagacaaacaaataacaccaatgtgaacatgaaatgacttttacaa |
11055383 |
T |
|
| Q |
201 |
aattagatttgtaatcaagagagaacccttagat |
234 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |
|
|
| T |
11055382 |
aattaaatttggaatcaagagagaacccttagat |
11055349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University