View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1110_low_36 (Length: 250)
Name: NF1110_low_36
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1110_low_36 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0066 (1 HSPs) |
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| [»] scaffold0407 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 3530733 - 3530494
Alignment:
| Q |
16 |
cataaataatctaagttaaagatactaggaaacatattgcaaacattggagagggtga----aacctctgataagaaaataacatagtatctcgctttca |
111 |
Q |
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| T |
3530733 |
cataaataattaaagttaaagatactaggaaacatattgcaaacattggagagggtgagtgaaacctctgataagaaaataacatagtatctcgctttca |
3530634 |
T |
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| Q |
112 |
accatcaatagtactgcaacttgactttttt-acataaattttgcaattgttactcatgtgctgaaaaatgtgcatattcttttcttttcaaataatcta |
210 |
Q |
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| T |
3530633 |
accatcaatagaactgcaacttgactttttttacataaagcttgcaattgttacttatgtgctgaaaaatgtgcatattcttttctttccaaataatcta |
3530534 |
T |
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| Q |
211 |
cacgcaagataatcaaataatattcaaggctaaatgaact |
250 |
Q |
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| T |
3530533 |
cacgcaagataatcaaataatattcaaggctaaatgaact |
3530494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 9827439 - 9827585
Alignment:
| Q |
98 |
gtatctcgctttcaaccatcaatagtactgcaacttgactttttt-acataaattttgcaattgttact--catgtgctgaaaaatgtgcatattctttt |
194 |
Q |
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| T |
9827439 |
gtatctcgctttcaaccatcaataagactacaacttgatttttttcacataaaaattgaaattg-tacttccttgtgctaaaaagcgtgcatgttccttt |
9827537 |
T |
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| Q |
195 |
cttttcaaataatctacacgcaagataatcaaataatattcaaggcta |
242 |
Q |
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| T |
9827538 |
ctttcttaataatccacacataagataactaaataatattcaaggcta |
9827585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 14551 - 14598
Alignment:
| Q |
193 |
ttcttttcaaataatctacacgcaagataatcaaataatattcaaggc |
240 |
Q |
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| T |
14551 |
ttctttccaaataatctacacacaagataaccaaataatattcgaggc |
14598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0407 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0407
Description:
Target: scaffold0407; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 1921 - 1881
Alignment:
| Q |
200 |
caaataatctacacgcaagataatcaaataatattcaaggc |
240 |
Q |
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| T |
1921 |
caaataatctacacacaagataaccaaataatattcgaggc |
1881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0407; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 8387 - 8347
Alignment:
| Q |
200 |
caaataatctacacgcaagataatcaaataatattcaaggc |
240 |
Q |
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| T |
8387 |
caaataatctacacacaagataaccaaataatattcgaggc |
8347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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