View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1110_low_4 (Length: 613)

Name: NF1110_low_4
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1110_low_4
NF1110_low_4
[»] chr4 (2 HSPs)
chr4 (98-601)||(49553161-49553664)
chr4 (308-363)||(17357048-17357103)
[»] chr2 (14 HSPs)
chr2 (313-371)||(14575201-14575259)
chr2 (313-366)||(14520122-14520175)
chr2 (313-362)||(15023636-15023685)
chr2 (308-363)||(14476142-14476197)
chr2 (316-363)||(14502183-14502230)
chr2 (313-363)||(14144911-14144961)
chr2 (313-363)||(14162244-14162294)
chr2 (313-363)||(14485239-14485289)
chr2 (311-345)||(14567247-14567281)
chr2 (314-363)||(14165304-14165353)
chr2 (313-362)||(14552210-14552259)
chr2 (314-363)||(15004179-15004228)
chr2 (313-341)||(13707181-13707209)
chr2 (313-365)||(14850739-14850791)
[»] chr3 (1 HSPs)
chr3 (313-365)||(38525068-38525120)


Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 98 - 601
Target Start/End: Original strand, 49553161 - 49553664
Alignment:
Q  98 actctttcaccgtctcttacctcatcaacaattacggtctctcccctcaaaccgcactcaatgtttctcgcaagctcactctctccgattcccaaaaacc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49553161 actctttcaccgtctcttacctcatcaacaattacggtctctcccctcaaaccgcactcaatgtttctcgcaagctcactctctccgatacccaaaaacc 49553260  T
Q  198 cgatttagttatcgccctcttcacaacccatggcttctccaacactcaaattcgtaatatcatcaaaagggaaccttgcttactcttatgcctcgacccc 297  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49553261 ggattcagttatcgccctcttcacaacccatggcttctccaacactcaaattcgtaatatcatcaaaagggaaccttgcttactcttatgcctcgacccc 49553360  T
Q  298 aacaagctacttttaccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcgcattgtaaatgctaaccctaaattcctattaa 397  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49553361 aacaagatacttttaccaaagtttcaatttttactctccaaaggtgcttctacttctgatattgttcgcattgtaaatgctaaccctaaattcctattaa 49553460  T
Q  398 gaagtttgcacaatcatattatccctacttatgattttattagagggtttcttcaatctgataaacaagccatcacatgtattaatcgttatgcttcttt 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49553461 gaagtttgcacaatcatattatccctacttatgattttattagagggtttcttcaatctgataaacaagccatcacatgtattaatcgttatgcttcttt 49553560  T
Q  498 tatttctgattctcgtgtcgaaactaatgtcaaattattgcttgataatggagccacacactcaaatattgctacattgttgcgtagttctcctaggata 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49553561 tatttctgattctcgtgtcgaaactaatgtcaaattattgcttgataatggagccacacactcaaatattgctacattgttgcgtagttctcctaggata 49553660  T
Q  598 tatt 601  Q
    ||||    
T  49553661 tatt 49553664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 17357103 - 17357048
Alignment:
Q  308 ttttaccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 363  Q
    |||| ||||||||| ||||||| || ||||||||||||||| | ||||||||||||    
T  17357103 ttttgccaaagtttgaattttttctatccaaaggtgctacttcatctgatattgtt 17357048  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 14575201 - 14575259
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcgcattgt 371  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||| |||| |||||    
T  14575201 ccaaagtttcaatttttactctccaaaggtgcttctacctctgacattcttcgtattgt 14575259  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 14520122 - 14520175
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcgc 366  Q
    ||||||||||||||||||||||||||||||||| || | ||||||||| |||||    
T  14520122 ccaaagtttcaatttttactctccaaaggtgcttcttcctctgatattattcgc 14520175  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 15023636 - 15023685
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgt 362  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  15023636 ccaaagtttcaatttttactctccaaaggcgcttctacttctgacattgt 15023685  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 14476197 - 14476142
Alignment:
Q  308 ttttaccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 363  Q
    |||| ||||||||||||||||| ||||||||||||||| |||| ||||| ||||||    
T  14476197 ttttgccaaagtttcaattttttctctccaaaggtgcttctacatctgacattgtt 14476142  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 14502183 - 14502230
Alignment:
Q  316 aagtttcaatttttactctccaaaggtgctactacttctgatattgtt 363  Q
    |||||||||||||| ||||||||||||||| |||| ||||| ||||||    
T  14502183 aagtttcaattttttctctccaaaggtgcttctacctctgacattgtt 14502230  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 14144911 - 14144961
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 363  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||| ||||||    
T  14144911 ccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgtt 14144961  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 14162294 - 14162244
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 363  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||| ||||||    
T  14162294 ccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgtt 14162244  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 14485239 - 14485289
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 363  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||| ||||||    
T  14485239 ccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgtt 14485289  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 345
Target Start/End: Original strand, 14567247 - 14567281
Alignment:
Q  311 taccaaagtttcaatttttactctccaaaggtgct 345  Q
    ||||||||||||||||||||||| |||||||||||    
T  14567247 taccaaagtttcaatttttactcgccaaaggtgct 14567281  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 14165353 - 14165304
Alignment:
Q  314 caaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 363  Q
    |||||||||||||||| ||||||||||||||| |||  ||||| ||||||    
T  14165353 caaagtttcaattttttctctccaaaggtgcttctaactctgacattgtt 14165304  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 14552210 - 14552259
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgt 362  Q
    ||||||||||||||||||||||||| ||||||| || | ||||| |||||    
T  14552210 ccaaagtttcaatttttactctccataggtgcttcttcctctgacattgt 14552259  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 15004228 - 15004179
Alignment:
Q  314 caaagtttcaatttttactctccaaaggtgctactacttctgatattgtt 363  Q
    |||||||||||||||| || |||||||||||| || | ||||||||||||    
T  15004228 caaagtttcaattttttctatccaaaggtgcttcttcctctgatattgtt 15004179  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 341
Target Start/End: Complemental strand, 13707209 - 13707181
Alignment:
Q  313 ccaaagtttcaatttttactctccaaagg 341  Q
    |||||||||||||||||||||||||||||    
T  13707209 ccaaagtttcaatttttactctccaaagg 13707181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 14850791 - 14850739
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcg 365  Q
    ||||||||||| |||||| |||||||||||||| || | ||||| ||||||||    
T  14850791 ccaaagtttcagtttttaatctccaaaggtgcttcttcctctgacattgttcg 14850739  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 38525120 - 38525068
Alignment:
Q  313 ccaaagtttcaatttttactctccaaaggtgctactacttctgatattgttcg 365  Q
    |||||||||||||||||| |||||||||||| |  ||| ||||| ||||||||    
T  38525120 ccaaagtttcaatttttaatctccaaaggtgtttttacctctgacattgttcg 38525068  T

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