View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1110_low_40 (Length: 225)

Name: NF1110_low_40
Description: NF1110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1110_low_40
NF1110_low_40
[»] chr5 (3 HSPs)
chr5 (15-97)||(43255823-43255905)
chr5 (15-97)||(43259089-43259171)
chr5 (15-97)||(43247826-43247908)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 43255823 - 43255905
Alignment:
Q  15 accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtatt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43255823 accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtatt 43255905  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 43259089 - 43259171
Alignment:
Q  15 accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtatt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43259089 accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtatt 43259171  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 43247826 - 43247908
Alignment:
Q  15 accaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtatt 97  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||    
T  43247826 accaagagggttaaatataggtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtatt 43247908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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